RNA–Protein interactions for RNA: ENST00000466159.6

SYNE1-217, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best) BASIC

Gene SYNE1, Length 2,610 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-217ENST00000466159 LGR6Q9HBX8 967 aa11.05□□□□□ -0.64
SYNE1-217ENST00000466159 CACNA1FO60840 1977 aa11.05□□□□□ -0.64
SYNE1-217ENST00000466159 HSP90AA1P07900 732 aaKnown RBP11.05□□□□□ -0.64
SYNE1-217ENST00000466159 XPCQ01831 940 aaPredicted RBP11.05□□□□□ -0.64
SYNE1-217ENST00000466159 LRRC59Q96AG4 307 aaKnown RBP11.05□□□□□ -0.64
SYNE1-217ENST00000466159 PHAXQ9H814 394 aaKnown RBP11.05□□□□□ -0.64
SYNE1-217ENST00000466159 BABAM1Q9NWV8 329 aa11.05□□□□□ -0.64
SYNE1-217ENST00000466159 NFAT5O94916 1531 aa11.05□□□□□ -0.64
SYNE1-217ENST00000466159 GNAI3P08754 354 aa11.05□□□□□ -0.64
SYNE1-217ENST00000466159 PDE1AP54750 535 aa11.05□□□□□ -0.64
SYNE1-217ENST00000466159 HDGFL1Q5TGJ6 251 aa11.05□□□□□ -0.64
SYNE1-217ENST00000466159 TSHZ3Q63HK5 1081 aa11.05□□□□□ -0.64
SYNE1-217ENST00000466159 GZF1Q9H116 711 aaPredicted RBP11.05□□□□□ -0.64
SYNE1-217ENST00000466159 RGPD2P0DJD1 1756 aa11.04□□□□□ -0.64
SYNE1-217ENST00000466159 TNPO1Q92973 898 aaKnown RBP11.04□□□□□ -0.64
SYNE1-217ENST00000466159 ORAI2Q96SN7 254 aa11.04□□□□□ -0.64
SYNE1-217ENST00000466159 ADGRL3Q9HAR2 1447 aa11.04□□□□□ -0.64
SYNE1-217ENST00000466159 TRAK2O60296 914 aa11.04□□□□□ -0.64
SYNE1-217ENST00000466159 EIF2S2P20042 333 aaKnown RBP11.04□□□□□ -0.64
SYNE1-217ENST00000466159 ATP8B2P98198 1209 aa11.04□□□□□ -0.64
SYNE1-217ENST00000466159 USP44Q9H0E7 712 aa11.04□□□□□ -0.64
SYNE1-217ENST00000466159 LRRFIP2Q9Y608 721 aaKnown RBP11.04□□□□□ -0.64
SYNE1-217ENST00000466159 CEMIPQ8WUJ3 1361 aa11.03□□□□□ -0.64
SYNE1-217ENST00000466159 KCNQ3O43525 872 aa11.03□□□□□ -0.64
SYNE1-217ENST00000466159 CASC1Q6TDU7 716 aa11.03□□□□□ -0.64
SYNE1-217ENST00000466159 OSBPL3Q9H4L5 887 aa11.03□□□□□ -0.64
SYNE1-217ENST00000466159 SOS1Q07889 1333 aaPredicted RBP11.03□□□□□ -0.64
SYNE1-217ENST00000466159 KCNH5Q8NCM2 988 aa11.03□□□□□ -0.64
SYNE1-217ENST00000466159 LRRCC1Q9C099 1032 aa11.03□□□□□ -0.64
SYNE1-217ENST00000466159 CIZ1Q9ULV3 898 aaPredicted RBP11.03□□□□□ -0.64
SYNE1-217ENST00000466159 EIF5BO60841 1220 aaKnown RBP11.02□□□□□ -0.65
SYNE1-217ENST00000466159 EIF4A1P60842 406 aaKnown RBP11.02□□□□□ -0.65
SYNE1-217ENST00000466159 RAB3GAP1Q15042 981 aa11.02□□□□□ -0.65
SYNE1-217ENST00000466159 RABEP1Q15276 862 aa11.02□□□□□ -0.65
SYNE1-217ENST00000466159 ZNF142P52746 1687 aaPredicted RBP11.02□□□□□ -0.65
SYNE1-217ENST00000466159 GCP02774 474 aa11.02□□□□□ -0.65
SYNE1-217ENST00000466159 LMOD2Q6P5Q4 547 aa11.02□□□□□ -0.65
SYNE1-217ENST00000466159 ARXQ96QS3 562 aa11.02□□□□□ -0.65
SYNE1-217ENST00000466159 SALL3Q9BXA9 1300 aa11.01□□□□□ -0.65
SYNE1-217ENST00000466159 UBTFL1P0CB47 393 aaPredicted RBP11.01□□□□□ -0.65
SYNE1-217ENST00000466159 MPRIPQ6WCQ1 1025 aa11.01□□□□□ -0.65
SYNE1-217ENST00000466159 IBTKQ9P2D0 1353 aaPredicted RBP11.01□□□□□ -0.65
SYNE1-217ENST00000466159 DDX11L8A8MPP1 907 aa11.01□□□□□ -0.65
SYNE1-217ENST00000466159 ZNF530Q6P9A1 599 aaPredicted RBP11.01□□□□□ -0.65
SYNE1-217ENST00000466159 CHPF2Q9P2E5 772 aa11.01□□□□□ -0.65
SYNE1-217ENST00000466159 ERC2O15083 957 aa11□□□□□ -0.65
SYNE1-217ENST00000466159 ANXA1P04083 346 aa11□□□□□ -0.65
SYNE1-217ENST00000466159 MX1P20591 662 aa11□□□□□ -0.65
SYNE1-217ENST00000466159 AK9Q5TCS8 1911 aa11□□□□□ -0.65
SYNE1-217ENST00000466159 BTBD11A6QL63 1104 aa11□□□□□ -0.65
SYNE1-217ENST00000466159 REC8O95072 547 aa11□□□□□ -0.65
SYNE1-217ENST00000466159 TEFQ10587 303 aa11□□□□□ -0.65
SYNE1-217ENST00000466159 AKAP4Q5JQC9 854 aa11□□□□□ -0.65
SYNE1-217ENST00000466159 ARHGEF25Q86VW2 580 aa11□□□□□ -0.65
SYNE1-217ENST00000466159 NPHP4O75161 1426 aaPredicted RBP11□□□□□ -0.65
SYNE1-217ENST00000466159 MED1Q15648 1581 aaPredicted RBP10.99□□□□□ -0.65
SYNE1-217ENST00000466159 N4BP2Q86UW6 1770 aaPredicted RBP10.99□□□□□ -0.65
SYNE1-217ENST00000466159 PXDNLA1KZ92 1463 aa10.99□□□□□ -0.65
SYNE1-217ENST00000466159 PLEKHO1Q53GL0 409 aaPredicted RBP10.99□□□□□ -0.65
SYNE1-217ENST00000466159 SRCIN1Q9C0H9 1055 aa10.99□□□□□ -0.65
SYNE1-217ENST00000466159 SSFA2P28290 1259 aa10.99□□□□□ -0.65
SYNE1-217ENST00000466159 IL1RAPL2Q9NP60 686 aa10.99□□□□□ -0.65
SYNE1-217ENST00000466159 KDM3BQ7LBC6 1761 aa10.98□□□□□ -0.65
SYNE1-217ENST00000466159 PI4KAP2A4QPH2 592 aa10.98□□□□□ -0.65
SYNE1-217ENST00000466159 NBPF7P0C2Y1 421 aaPredicted RBP10.98□□□□□ -0.65
SYNE1-217ENST00000466159 PPP1R42Q7Z4L9 355 aa10.98□□□□□ -0.65
SYNE1-217ENST00000466159 PI4KAP1Q8N8J0 262 aa10.98□□□□□ -0.65
SYNE1-217ENST00000466159 GBP4Q96PP9 640 aa10.98□□□□□ -0.65
SYNE1-217ENST00000466159 ANO8Q9HCE9 1232 aaPredicted RBP10.98□□□□□ -0.65
SYNE1-217ENST00000466159 AXIN2Q9Y2T1 843 aa10.98□□□□□ -0.65
SYNE1-217ENST00000466159 TUBGCP6Q96RT7 1819 aa10.98□□□□□ -0.65
SYNE1-217ENST00000466159 L1TD1Q5T7N2 865 aaKnown RBP10.98□□□□□ -0.65
SYNE1-217ENST00000466159 SSH3Q8TE77 659 aa10.98□□□□□ -0.65
SYNE1-217ENST00000466159 ANKRD24Q8TF21 1146 aa10.98□□□□□ -0.65
SYNE1-217ENST00000466159 RILPL2Q969X0 211 aa10.98□□□□□ -0.65
SYNE1-217ENST00000466159 PHRF1Q9P1Y6 1649 aaKnown RBP10.98□□□□□ -0.65
SYNE1-217ENST00000466159 PXDNQ92626 1479 aa10.98□□□□□ -0.65
SYNE1-217ENST00000466159 ADAMTSL3P82987 1691 aa10.97□□□□□ -0.65
SYNE1-217ENST00000466159 FSD2A1L4K1 749 aa10.97□□□□□ -0.65
SYNE1-217ENST00000466159 GOLGA6L3A6NEY3 463 aa10.97□□□□□ -0.65
SYNE1-217ENST00000466159 TRIM6-TRIM34B2RNG4 842 aa10.97□□□□□ -0.65
SYNE1-217ENST00000466159 RNMTO43148 476 aaKnown RBP10.97□□□□□ -0.65
SYNE1-217ENST00000466159 DNAAF4Q8WXU2 420 aa10.97□□□□□ -0.65
SYNE1-217ENST00000466159 LMO7Q8WWI1 1683 aa10.97□□□□□ -0.65
SYNE1-217ENST00000466159 HOXB7P09629 217 aa10.97□□□□□ -0.65
SYNE1-217ENST00000466159 AMOTQ4VCS5 1084 aa10.97□□□□□ -0.65
SYNE1-217ENST00000466159 C1orf141Q5JVX7 400 aa10.97□□□□□ -0.65
SYNE1-217ENST00000466159 BEND3Q5T5X7 828 aa10.97□□□□□ -0.65
SYNE1-217ENST00000466159 UNC5CLQ8IV45 518 aa10.97□□□□□ -0.65
SYNE1-217ENST00000466159 ESYT1Q9BSJ8 1104 aa10.97□□□□□ -0.65
SYNE1-217ENST00000466159 STAP2Q9UGK3 403 aa10.97□□□□□ -0.65
SYNE1-217ENST00000466159 SURF6O75683 361 aaKnown RBP10.96□□□□□ -0.65
SYNE1-217ENST00000466159 XRCC6P12956 609 aaKnown RBP eCLIP10.96□□□□□ -0.65
SYNE1-217ENST00000466159 KRT28Q7Z3Y7 464 aa10.96□□□□□ -0.65
SYNE1-217ENST00000466159 NUTM1Q86Y26 1132 aa10.96□□□□□ -0.65
SYNE1-217ENST00000466159 SRGAP3O43295 1099 aa10.96□□□□□ -0.66
SYNE1-217ENST00000466159 ST18O60284 1047 aa10.96□□□□□ -0.66
SYNE1-217ENST00000466159 CHMLP26374 656 aa10.96□□□□□ -0.66
SYNE1-217ENST00000466159 POLA2Q14181 598 aa10.96□□□□□ -0.66
SYNE1-217ENST00000466159 PROSER2Q86WR7 435 aaPredicted RBP10.96□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms