RNA–Protein interactions for RNA: ENST00000465339.5

COL28A1-206, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

TSL 3

Gene COL28A1, Length 722 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-206ENST00000465339 ANO8Q9HCE9 1232 aaPredicted RBP17.46■□□□□ 0.39
COL28A1-206ENST00000465339 MKRN4PQ13434 485 aaPredicted RBP17.45■□□□□ 0.38
COL28A1-206ENST00000465339 CCNL1Q9UK58 526 aaPredicted RBP17.45■□□□□ 0.38
COL28A1-206ENST00000465339 PAPPAQ13219 1627 aa17.45■□□□□ 0.38
COL28A1-206ENST00000465339 PALLDQ8WX93 1383 aa17.44■□□□□ 0.38
COL28A1-206ENST00000465339 SCN11AQ9UI33 1791 aa17.43■□□□□ 0.38
COL28A1-206ENST00000465339 U2AF1L5P0DN76 240 aaPredicted RBP17.43■□□□□ 0.38
COL28A1-206ENST00000465339 CABP4P57796 275 aa17.43■□□□□ 0.38
COL28A1-206ENST00000465339 U2AF1Q01081 240 aaKnown RBP eCLIP17.43■□□□□ 0.38
COL28A1-206ENST00000465339 MTHFSDQ2M296 383 aaKnown RBP17.43■□□□□ 0.38
COL28A1-206ENST00000465339 KDM6AO15550 1401 aaPredicted RBP17.43■□□□□ 0.38
COL28A1-206ENST00000465339 LRP5O75197 1615 aa17.43■□□□□ 0.38
COL28A1-206ENST00000465339 FCHSD2O94868 740 aa17.42■□□□□ 0.38
COL28A1-206ENST00000465339 VIRMAQ69YN4 1812 aaKnown RBP17.42■□□□□ 0.38
COL28A1-206ENST00000465339 KCNQ4P56696 695 aa17.41■□□□□ 0.38
COL28A1-206ENST00000465339 GAS2L2Q8NHY3 880 aa17.41■□□□□ 0.38
COL28A1-206ENST00000465339 AKT1S1Q96B36 256 aa17.41■□□□□ 0.38
COL28A1-206ENST00000465339 RSPH6AQ9H0K4 717 aa17.41■□□□□ 0.38
COL28A1-206ENST00000465339 ATG3Q9NT62 314 aa17.41■□□□□ 0.38
COL28A1-206ENST00000465339 ASAP1Q9ULH1 1129 aa17.41■□□□□ 0.38
COL28A1-206ENST00000465339 TAF1LQ8IZX4 1826 aa17.4■□□□□ 0.38
COL28A1-206ENST00000465339 ZNF316A6NFI3 1004 aaPredicted RBP17.4■□□□□ 0.38
COL28A1-206ENST00000465339 NFATC2IPQ8NCF5 419 aa17.4■□□□□ 0.38
COL28A1-206ENST00000465339 QSER1Q2KHR3 1735 aa17.4■□□□□ 0.38
COL28A1-206ENST00000465339 CASZ1Q86V15 1759 aa17.4■□□□□ 0.38
COL28A1-206ENST00000465339 C5P01031 1676 aa17.39■□□□□ 0.37
COL28A1-206ENST00000465339 PRKAR2BP31323 418 aa17.39■□□□□ 0.37
COL28A1-206ENST00000465339 ZNF827Q17R98 1081 aa17.39■□□□□ 0.37
COL28A1-206ENST00000465339 SPON1Q9HCB6 807 aa17.39■□□□□ 0.37
COL28A1-206ENST00000465339 LOC102724428A0A0B4J2F2 783 aa17.38■□□□□ 0.37
COL28A1-206ENST00000465339 RNMTO43148 476 aaKnown RBP17.38■□□□□ 0.37
COL28A1-206ENST00000465339 SIK1P57059 783 aa17.38■□□□□ 0.37
COL28A1-206ENST00000465339 LGR6Q9HBX8 967 aa17.38■□□□□ 0.37
COL28A1-206ENST00000465339 TFCP2L1Q9NZI6 479 aa17.38■□□□□ 0.37
COL28A1-206ENST00000465339 MYBBP1AQ9BQG0 1328 aaKnown RBP17.38■□□□□ 0.37
COL28A1-206ENST00000465339 ADAMTS7Q9UKP4 1686 aa17.37■□□□□ 0.37
COL28A1-206ENST00000465339 GNAT3A8MTJ3 354 aa17.37■□□□□ 0.37
COL28A1-206ENST00000465339 PHACTR3Q96KR7 559 aa17.37■□□□□ 0.37
COL28A1-206ENST00000465339 SLC52A2Q9HAB3 445 aa17.37■□□□□ 0.37
COL28A1-206ENST00000465339 ZNF831Q5JPB2 1677 aa17.36■□□□□ 0.37
COL28A1-206ENST00000465339 PDGFDQ9GZP0 370 aaPredicted RBP17.36■□□□□ 0.37
COL28A1-206ENST00000465339 PNNQ9H307 717 aaKnown RBP17.36■□□□□ 0.37
COL28A1-206ENST00000465339 NEFMP07197 916 aa17.35■□□□□ 0.37
COL28A1-206ENST00000465339 ATP6V1AP38606 617 aa17.35■□□□□ 0.37
COL28A1-206ENST00000465339 SLC16A10Q8TF71 515 aa17.35■□□□□ 0.37
COL28A1-206ENST00000465339 PRKRIP1Q9H875 184 aaPredicted RBP17.35■□□□□ 0.37
COL28A1-206ENST00000465339 MAP3K5Q99683 1374 aa17.35■□□□□ 0.37
COL28A1-206ENST00000465339 TUBGCP6Q96RT7 1819 aa17.34■□□□□ 0.37
COL28A1-206ENST00000465339 RBM42Q9BTD8 480 aaKnown RBP17.34■□□□□ 0.37
COL28A1-206ENST00000465339 MTFR1LQ9H019 292 aa17.34■□□□□ 0.37
COL28A1-206ENST00000465339 C4BP0C0L5 1744 aa17.33■□□□□ 0.37
COL28A1-206ENST00000465339 PNPLA7Q6ZV29 1317 aa17.33■□□□□ 0.36
COL28A1-206ENST00000465339 FLAD1Q8NFF5 587 aa17.33■□□□□ 0.36
COL28A1-206ENST00000465339 MRC1P22897 1456 aa17.32■□□□□ 0.36
COL28A1-206ENST00000465339 ZBTB7AO95365 584 aa17.32■□□□□ 0.36
COL28A1-206ENST00000465339 IL17REQ8NFR9 667 aa17.32■□□□□ 0.36
COL28A1-206ENST00000465339 AK7Q96M32 723 aa17.32■□□□□ 0.36
COL28A1-206ENST00000465339 HTATSF1O43719 755 aaKnown RBP17.31■□□□□ 0.36
COL28A1-206ENST00000465339 TEFQ10587 303 aa17.31■□□□□ 0.36
COL28A1-206ENST00000465339 ITPK1Q13572 414 aa17.31■□□□□ 0.36
COL28A1-206ENST00000465339 LINC00116Q8NCU8 138 aa17.31■□□□□ 0.36
COL28A1-206ENST00000465339 SRCAPQ6ZRS2 3230 aa17.31■□□□□ 0.36
COL28A1-206ENST00000465339 PTCD1O75127 700 aaKnown RBP17.3■□□□□ 0.36
COL28A1-206ENST00000465339 RTF1Q92541 710 aaKnown RBP17.3■□□□□ 0.36
COL28A1-206ENST00000465339 SLC4A9Q96Q91 983 aa17.3■□□□□ 0.36
COL28A1-206ENST00000465339 UBR3Q6ZT12 1888 aa17.29■□□□□ 0.36
COL28A1-206ENST00000465339 RC3H1Q5TC82 1133 aaKnown RBP17.29■□□□□ 0.36
COL28A1-206ENST00000465339 COL23A1Q86Y22 540 aaPredicted RBP17.29■□□□□ 0.36
COL28A1-206ENST00000465339 PLEKHF1Q96S99 279 aa17.29■□□□□ 0.36
COL28A1-206ENST00000465339 PPP1R1BQ9UD71 204 aaPredicted RBP17.29■□□□□ 0.36
COL28A1-206ENST00000465339 CEMIPQ8WUJ3 1361 aa17.28■□□□□ 0.36
COL28A1-206ENST00000465339 SIPA1L3O60292 1781 aaPredicted RBP17.28■□□□□ 0.36
COL28A1-206ENST00000465339 COL5A3P25940 1745 aaPredicted RBP17.28■□□□□ 0.36
COL28A1-206ENST00000465339 PTGER2P43116 358 aa17.28■□□□□ 0.36
COL28A1-206ENST00000465339 MAPK8IP3Q9UPT6 1336 aa17.27■□□□□ 0.36
COL28A1-206ENST00000465339 SSFA2P28290 1259 aa17.27■□□□□ 0.36
COL28A1-206ENST00000465339 SLC39A6Q13433 755 aa17.27■□□□□ 0.36
COL28A1-206ENST00000465339 DLG5Q8TDM6 1919 aa17.27■□□□□ 0.35
COL28A1-206ENST00000465339 CICQ96RK0 1608 aaPredicted RBP17.26■□□□□ 0.35
COL28A1-206ENST00000465339 TTC5Q8N0Z6 440 aa17.26■□□□□ 0.35
COL28A1-206ENST00000465339 SGIP1Q9BQI5 828 aa17.26■□□□□ 0.35
COL28A1-206ENST00000465339 COL24A1Q17RW2 1714 aa17.26■□□□□ 0.35
COL28A1-206ENST00000465339 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP17.25■□□□□ 0.35
COL28A1-206ENST00000465339 GNPATO15228 680 aa17.25■□□□□ 0.35
COL28A1-206ENST00000465339 WDR43Q15061 677 aaKnown RBP eCLIP17.25■□□□□ 0.35
COL28A1-206ENST00000465339 NFE2L2Q16236 605 aa17.25■□□□□ 0.35
COL28A1-206ENST00000465339 VSIG10Q8N0Z9 540 aa17.25■□□□□ 0.35
COL28A1-206ENST00000465339 UBR2Q8IWV8 1755 aa17.25■□□□□ 0.35
COL28A1-206ENST00000465339 CNTNAP4Q9C0A0 1308 aa17.24■□□□□ 0.35
COL28A1-206ENST00000465339 POLD1P28340 1107 aa17.24■□□□□ 0.35
COL28A1-206ENST00000465339 ZNF790Q6PG37 636 aa17.24■□□□□ 0.35
COL28A1-206ENST00000465339 MCM10Q7L590 875 aa17.24■□□□□ 0.35
COL28A1-206ENST00000465339 RTCBQ9Y3I0 505 aaKnown RBP17.24■□□□□ 0.35
COL28A1-206ENST00000465339 MYH14Q7Z406 1995 aaKnown RBP17.24■□□□□ 0.35
COL28A1-206ENST00000465339 TJP1Q07157 1748 aa17.24■□□□□ 0.35
COL28A1-206ENST00000465339 KCPQ6ZWJ8 1503 aa17.23■□□□□ 0.35
COL28A1-206ENST00000465339 BTBD11A6QL63 1104 aa17.23■□□□□ 0.35
COL28A1-206ENST00000465339 RPS6KA4O75676 772 aa17.23■□□□□ 0.35
COL28A1-206ENST00000465339 PHF14O94880 888 aa17.23■□□□□ 0.35
COL28A1-206ENST00000465339 TRAPPC3LQ5T215 181 aa17.22■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 7.6 ms