RNA–Protein interactions for RNA: ENST00000464362.5

HPS4-208, Transcript of HPS4, biogenesis of lysosomal organelles complex 3 subunit 2, humanhuman

TSL 5

Gene HPS4, Length 4,277 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4-208ENST00000464362 A0A1W2PP64 1363 aa10.79□□□□□ -0.68
HPS4-208ENST00000464362 KIAA0556O60303 1618 aa10.79□□□□□ -0.68
HPS4-208ENST00000464362 LRRFIP1Q32MZ4 808 aaKnown RBP10.78□□□□□ -0.68
HPS4-208ENST00000464362 PROSER2Q86WR7 435 aaPredicted RBP10.78□□□□□ -0.68
HPS4-208ENST00000464362 AMOTL2Q9Y2J4 779 aa10.78□□□□□ -0.68
HPS4-208ENST00000464362 PLCH2O75038 1416 aa10.78□□□□□ -0.68
HPS4-208ENST00000464362 CFAP65Q6ZU64 1925 aaKnown RBP10.78□□□□□ -0.68
HPS4-208ENST00000464362 RAD21O60216 631 aa10.78□□□□□ -0.68
HPS4-208ENST00000464362 GLRX3O76003 335 aaKnown RBP10.78□□□□□ -0.68
HPS4-208ENST00000464362 ERC1Q8IUD2 1116 aa10.78□□□□□ -0.68
HPS4-208ENST00000464362 ANKRD44Q8N8A2 993 aa10.78□□□□□ -0.68
HPS4-208ENST00000464362 CHAMP1Q96JM3 812 aa10.78□□□□□ -0.68
HPS4-208ENST00000464362 GIMAP6Q6P9H5 292 aa10.78□□□□□ -0.68
HPS4-208ENST00000464362 PLEKHM2Q8IWE5 1019 aa10.78□□□□□ -0.68
HPS4-208ENST00000464362 DNMT1P26358 1616 aaKnown RBP10.78□□□□□ -0.68
HPS4-208ENST00000464362 IL16Q14005 1332 aa10.78□□□□□ -0.68
HPS4-208ENST00000464362 ATF3P18847 181 aa10.78□□□□□ -0.68
HPS4-208ENST00000464362 DNAAF4Q8WXU2 420 aa10.78□□□□□ -0.68
HPS4-208ENST00000464362 SHROOM2Q13796 1616 aa10.77□□□□□ -0.68
HPS4-208ENST00000464362 ZBTB7BO15156 539 aaPredicted RBP10.77□□□□□ -0.68
HPS4-208ENST00000464362 PIP4K2AP48426 406 aaPredicted RBP10.77□□□□□ -0.68
HPS4-208ENST00000464362 BRPF1P55201 1214 aaPredicted RBP10.77□□□□□ -0.68
HPS4-208ENST00000464362 EIF4A2Q14240 407 aaKnown RBP10.77□□□□□ -0.68
HPS4-208ENST00000464362 G2E3Q7L622 706 aa10.77□□□□□ -0.68
HPS4-208ENST00000464362 MNS1Q8NEH6 495 aa10.77□□□□□ -0.68
HPS4-208ENST00000464362 CPA1P15085 419 aa10.77□□□□□ -0.69
HPS4-208ENST00000464362 VPS37DQ86XT2 251 aa10.77□□□□□ -0.69
HPS4-208ENST00000464362 RRP9O43818 475 aaKnown RBP10.76□□□□□ -0.69
HPS4-208ENST00000464362 MARCH6O60337 910 aa10.76□□□□□ -0.69
HPS4-208ENST00000464362 LETM1O95202 739 aaPredicted RBP10.76□□□□□ -0.69
HPS4-208ENST00000464362 RAB11FIP4Q86YS3 637 aa10.76□□□□□ -0.69
HPS4-208ENST00000464362 NUP160Q12769 1436 aa10.76□□□□□ -0.69
HPS4-208ENST00000464362 ARHGEF12Q9NZN5 1544 aa10.76□□□□□ -0.69
HPS4-208ENST00000464362 HMGN5P82970 282 aaKnown RBP10.76□□□□□ -0.69
HPS4-208ENST00000464362 LRRC2Q9BYS8 371 aa10.76□□□□□ -0.69
HPS4-208ENST00000464362 LIMCH1Q9UPQ0 1083 aa10.76□□□□□ -0.69
HPS4-208ENST00000464362 TATP17735 454 aaPredicted RBP10.76□□□□□ -0.69
HPS4-208ENST00000464362 THEMISQ8N1K5 641 aaPredicted RBP10.76□□□□□ -0.69
HPS4-208ENST00000464362 PCMTD1Q96MG8 357 aaPredicted RBP10.76□□□□□ -0.69
HPS4-208ENST00000464362 ATP5J2-PTCD1G3V325 749 aa10.75□□□□□ -0.69
HPS4-208ENST00000464362 HIP1O00291 1037 aa10.75□□□□□ -0.69
HPS4-208ENST00000464362 CLCN1P35523 988 aa10.75□□□□□ -0.69
HPS4-208ENST00000464362 CABP4P57796 275 aa10.75□□□□□ -0.69
HPS4-208ENST00000464362 CCT2P78371 535 aaKnown RBP10.75□□□□□ -0.69
HPS4-208ENST00000464362 RAB3GAP1Q15042 981 aa10.75□□□□□ -0.69
HPS4-208ENST00000464362 MAP3K11Q16584 847 aa10.75□□□□□ -0.69
HPS4-208ENST00000464362 CEP85Q6P2H3 762 aa10.75□□□□□ -0.69
HPS4-208ENST00000464362 MYD88Q99836 296 aa10.75□□□□□ -0.69
HPS4-208ENST00000464362 MAGI2Q86UL8 1455 aa10.75□□□□□ -0.69
HPS4-208ENST00000464362 VPS53Q5VIR6 699 aa10.75□□□□□ -0.69
HPS4-208ENST00000464362 ARHGAP45Q92619 1136 aa10.75□□□□□ -0.69
HPS4-208ENST00000464362 DCTPP1Q9H773 170 aa10.75□□□□□ -0.69
HPS4-208ENST00000464362 TTC12Q9H892 705 aaPredicted RBP10.75□□□□□ -0.69
HPS4-208ENST00000464362 PA2G4Q9UQ80 394 aaKnown RBP10.75□□□□□ -0.69
HPS4-208ENST00000464362 CNPY2Q9Y2B0 182 aa10.75□□□□□ -0.69
HPS4-208ENST00000464362 NSD2O96028 1365 aa10.75□□□□□ -0.69
HPS4-208ENST00000464362 STX6O43752 255 aa10.75□□□□□ -0.69
HPS4-208ENST00000464362 GJB2P29033 226 aa10.75□□□□□ -0.69
HPS4-208ENST00000464362 SAFBQ15424 915 aaKnown RBP eCLIP10.75□□□□□ -0.69
HPS4-208ENST00000464362 CCDC82Q8N4S0 544 aa10.75□□□□□ -0.69
HPS4-208ENST00000464362 DHX16O60231 1041 aaKnown RBP10.75□□□□□ -0.69
HPS4-208ENST00000464362 ADCY5O95622 1261 aa10.75□□□□□ -0.69
HPS4-208ENST00000464362 RHPN1Q8TCX5 695 aa10.75□□□□□ -0.69
HPS4-208ENST00000464362 CBX1P83916 185 aa10.74□□□□□ -0.69
HPS4-208ENST00000464362 MTHFSDQ2M296 383 aaKnown RBP10.74□□□□□ -0.69
HPS4-208ENST00000464362 MAP7D2Q96T17 732 aa10.74□□□□□ -0.69
HPS4-208ENST00000464362 ZMYM4Q5VZL5 1548 aa10.74□□□□□ -0.69
HPS4-208ENST00000464362 PTPRCP08575 1304 aa10.74□□□□□ -0.69
HPS4-208ENST00000464362 CCDC112Q8NEF3 446 aa10.74□□□□□ -0.69
HPS4-208ENST00000464362 SNX21Q969T3 373 aa10.74□□□□□ -0.69
HPS4-208ENST00000464362 C16orf45Q96MC5 204 aaPredicted RBP10.74□□□□□ -0.69
HPS4-208ENST00000464362 ESYT1Q9BSJ8 1104 aa10.74□□□□□ -0.69
HPS4-208ENST00000464362 NAT10Q9H0A0 1025 aaKnown RBP10.74□□□□□ -0.69
HPS4-208ENST00000464362 SNRKQ9NRH2 765 aa10.74□□□□□ -0.69
HPS4-208ENST00000464362 DUOX2Q9NRD8 1548 aa10.74□□□□□ -0.69
HPS4-208ENST00000464362 KAT6BQ8WYB5 2073 aa10.74□□□□□ -0.69
HPS4-208ENST00000464362 ERICH2A1L162 156 aa10.74□□□□□ -0.69
HPS4-208ENST00000464362 TSR1Q2NL82 804 aaKnown RBP10.74□□□□□ -0.69
HPS4-208ENST00000464362 CCDC183Q5T5S1 534 aa10.74□□□□□ -0.69
HPS4-208ENST00000464362 CNNM1Q9NRU3 951 aa10.74□□□□□ -0.69
HPS4-208ENST00000464362 CHPF2Q9P2E5 772 aa10.74□□□□□ -0.69
HPS4-208ENST00000464362 PPP6R1Q9UPN7 881 aa10.74□□□□□ -0.69
HPS4-208ENST00000464362 MAP3K2Q9Y2U5 619 aa10.74□□□□□ -0.69
HPS4-208ENST00000464362 GOLGA6L1Q8N7Z2 621 aa10.73□□□□□ -0.69
HPS4-208ENST00000464362 NOC3LQ8WTT2 800 aaKnown RBP10.73□□□□□ -0.69
HPS4-208ENST00000464362 BLMP54132 1417 aaPredicted RBP10.73□□□□□ -0.69
HPS4-208ENST00000464362 ITSN2Q9NZM3 1697 aa10.73□□□□□ -0.69
HPS4-208ENST00000464362 ANKRD1Q15327 319 aa10.73□□□□□ -0.69
HPS4-208ENST00000464362 TTC39AQ5SRH9 613 aa10.73□□□□□ -0.69
HPS4-208ENST00000464362 TOM1L2Q6ZVM7 507 aa10.73□□□□□ -0.69
HPS4-208ENST00000464362 TRMT1Q9NXH9 659 aaKnown RBP10.73□□□□□ -0.69
HPS4-208ENST00000464362 SERPINC1P01008 464 aa10.73□□□□□ -0.69
HPS4-208ENST00000464362 TPM1P09493 284 aa10.73□□□□□ -0.69
HPS4-208ENST00000464362 SKIDA1Q1XH10 827 aa10.73□□□□□ -0.69
HPS4-208ENST00000464362 USP48Q86UV5 1035 aa10.73□□□□□ -0.69
HPS4-208ENST00000464362 PIBF1Q8WXW3 757 aa10.73□□□□□ -0.69
HPS4-208ENST00000464362 ZSCAN31Q96LW9 406 aaPredicted RBP10.73□□□□□ -0.69
HPS4-208ENST00000464362 ECHDC1Q9NTX5 307 aa10.73□□□□□ -0.69
HPS4-208ENST00000464362 PHAXQ9H814 394 aaKnown RBP10.72□□□□□ -0.69
HPS4-208ENST00000464362 CEP126Q9P2H0 1117 aa10.72□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 13 ms