RNA–Protein interactions for RNA: ENST00000463007.5

HDAC4-208, Transcript of histone deacetylase 4, humanhuman

TSL 1 (best)

Gene HDAC4, Length 3,158 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-208ENST00000463007 GSPT1P15170 499 aaKnown RBP15.31■□□□□ 0.04
HDAC4-208ENST00000463007 SKOR2Q2VWA4 1001 aaPredicted RBP15.3■□□□□ 0.04
HDAC4-208ENST00000463007 SLC4A10Q6U841 1118 aa15.3■□□□□ 0.04
HDAC4-208ENST00000463007 MED1Q15648 1581 aaPredicted RBP15.3■□□□□ 0.04
HDAC4-208ENST00000463007 CDC45O75419 566 aa15.3■□□□□ 0.04
HDAC4-208ENST00000463007 DDIT3P35638 169 aa15.29■□□□□ 0.04
HDAC4-208ENST00000463007 INTS3Q68E01 1043 aaKnown RBP15.29■□□□□ 0.04
HDAC4-208ENST00000463007 MIS18AQ9NYP9 233 aa15.29■□□□□ 0.04
HDAC4-208ENST00000463007 RRP9O43818 475 aaKnown RBP15.28■□□□□ 0.04
HDAC4-208ENST00000463007 PRIM1P49642 420 aaKnown RBP15.28■□□□□ 0.04
HDAC4-208ENST00000463007 MCM10Q7L590 875 aa15.28■□□□□ 0.04
HDAC4-208ENST00000463007 SYCE3A1L190 88 aa15.28■□□□□ 0.04
HDAC4-208ENST00000463007 MTHFSDQ2M296 383 aaKnown RBP15.28■□□□□ 0.04
HDAC4-208ENST00000463007 GCC1Q96CN9 775 aa15.28■□□□□ 0.04
HDAC4-208ENST00000463007 EYA1Q99502 592 aa15.28■□□□□ 0.04
HDAC4-208ENST00000463007 CAMTA1Q9Y6Y1 1673 aa15.27■□□□□ 0.04
HDAC4-208ENST00000463007 API5Q9BZZ5 524 aaKnown RBP15.27■□□□□ 0.04
HDAC4-208ENST00000463007 RBSNQ9H1K0 784 aa15.27■□□□□ 0.04
HDAC4-208ENST00000463007 CIZ1Q9ULV3 898 aaPredicted RBP15.27■□□□□ 0.04
HDAC4-208ENST00000463007 RTL1A6NKG5 1358 aa15.27■□□□□ 0.04
HDAC4-208ENST00000463007 CACNA1FO60840 1977 aa15.27■□□□□ 0.03
HDAC4-208ENST00000463007 ADGRL3Q9HAR2 1447 aa15.27■□□□□ 0.03
HDAC4-208ENST00000463007 ZSCAN23Q3MJ62 389 aa15.26■□□□□ 0.03
HDAC4-208ENST00000463007 NECTIN2Q92692 538 aa15.26■□□□□ 0.03
HDAC4-208ENST00000463007 GDPD2Q9HCC8 539 aa15.26■□□□□ 0.03
HDAC4-208ENST00000463007 TRPM3Q9HCF6 1732 aaPredicted RBP15.26■□□□□ 0.03
HDAC4-208ENST00000463007 PLEKHM2Q8IWE5 1019 aa15.26■□□□□ 0.03
HDAC4-208ENST00000463007 CHMP4BQ9H444 224 aaKnown RBP15.26■□□□□ 0.03
HDAC4-208ENST00000463007 TUBGCP6Q96RT7 1819 aa15.26■□□□□ 0.03
HDAC4-208ENST00000463007 FOXO3O43524 673 aa15.26■□□□□ 0.03
HDAC4-208ENST00000463007 PLCB2Q00722 1185 aa15.26■□□□□ 0.03
HDAC4-208ENST00000463007 CCDC173Q0VFZ6 552 aa15.26■□□□□ 0.03
HDAC4-208ENST00000463007 ZSCAN30Q86W11 494 aa15.26■□□□□ 0.03
HDAC4-208ENST00000463007 NSFL1CQ9UNZ2 370 aaKnown RBP15.26■□□□□ 0.03
HDAC4-208ENST00000463007 MSH6P52701 1360 aa15.25■□□□□ 0.03
HDAC4-208ENST00000463007 PTMAP06454 111 aaKnown RBP15.25■□□□□ 0.03
HDAC4-208ENST00000463007 HOXC9P31274 260 aa15.25■□□□□ 0.03
HDAC4-208ENST00000463007 NGDNQ8NEJ9 315 aaKnown RBP15.25■□□□□ 0.03
HDAC4-208ENST00000463007 KDM3BQ7LBC6 1761 aa15.25■□□□□ 0.03
HDAC4-208ENST00000463007 LMO7Q8WWI1 1683 aa15.25■□□□□ 0.03
HDAC4-208ENST00000463007 SETD1BQ9UPS6 1966 aaKnown RBP15.25■□□□□ 0.03
HDAC4-208ENST00000463007 NCAPD2Q15021 1401 aa15.25■□□□□ 0.03
HDAC4-208ENST00000463007 RGPD2P0DJD1 1756 aa15.24■□□□□ 0.03
HDAC4-208ENST00000463007 KLHL40Q2TBA0 621 aa15.24■□□□□ 0.03
HDAC4-208ENST00000463007 PTPRCP08575 1304 aa15.24■□□□□ 0.03
HDAC4-208ENST00000463007 SLIT3O75094 1523 aa15.24■□□□□ 0.03
HDAC4-208ENST00000463007 SDSP20132 328 aa15.23■□□□□ 0.03
HDAC4-208ENST00000463007 NEK4P51957 841 aa15.23■□□□□ 0.03
HDAC4-208ENST00000463007 LARP6Q9BRS8 491 aaKnown RBP15.23■□□□□ 0.03
HDAC4-208ENST00000463007 HTATSF1O43719 755 aaKnown RBP15.23■□□□□ 0.03
HDAC4-208ENST00000463007 DNTTIP2Q5QJE6 756 aaKnown RBP15.23■□□□□ 0.03
HDAC4-208ENST00000463007 F6X3S4 739 aa15.22■□□□□ 0.03
HDAC4-208ENST00000463007 NCOA3Q9Y6Q9 1424 aa15.22■□□□□ 0.03
HDAC4-208ENST00000463007 HAP1P54257 671 aaPredicted RBP15.21■□□□□ 0.03
HDAC4-208ENST00000463007 JARID2Q92833 1246 aaPredicted RBP15.21■□□□□ 0.03
HDAC4-208ENST00000463007 RILPL2Q969X0 211 aa15.21■□□□□ 0.03
HDAC4-208ENST00000463007 MEIS3Q99687 375 aa15.21■□□□□ 0.03
HDAC4-208ENST00000463007 LMBRD1Q9NUN5 540 aa15.21■□□□□ 0.03
HDAC4-208ENST00000463007 RABEP1Q15276 862 aa15.21■□□□□ 0.03
HDAC4-208ENST00000463007 GPT2Q8TD30 523 aa15.21■□□□□ 0.03
HDAC4-208ENST00000463007 USP26Q9BXU7 913 aa15.21■□□□□ 0.03
HDAC4-208ENST00000463007 EXOC6BQ9Y2D4 811 aa15.21■□□□□ 0.03
HDAC4-208ENST00000463007 TRIM6-TRIM34B2RNG4 842 aa15.2■□□□□ 0.02
HDAC4-208ENST00000463007 ST18O60284 1047 aa15.2■□□□□ 0.02
HDAC4-208ENST00000463007 TTC22Q5TAA0 569 aa15.2■□□□□ 0.02
HDAC4-208ENST00000463007 DCTPP1Q9H773 170 aa15.2■□□□□ 0.02
HDAC4-208ENST00000463007 NLRP6P59044 892 aa15.2■□□□□ 0.02
HDAC4-208ENST00000463007 ZNF830Q96NB3 372 aaPredicted RBP15.2■□□□□ 0.02
HDAC4-208ENST00000463007 UPF3BQ9BZI7 483 aaKnown RBP15.2■□□□□ 0.02
HDAC4-208ENST00000463007 ISY1Q9ULR0 285 aaKnown RBP15.2■□□□□ 0.02
HDAC4-208ENST00000463007 MST1RQ04912 1400 aa15.2■□□□□ 0.02
HDAC4-208ENST00000463007 ADAMTS7Q9UKP4 1686 aa15.2■□□□□ 0.02
HDAC4-208ENST00000463007 CEMIPQ8WUJ3 1361 aa15.19■□□□□ 0.02
HDAC4-208ENST00000463007 CASC1Q6TDU7 716 aa15.19■□□□□ 0.02
HDAC4-208ENST00000463007 ANKRD44Q8N8A2 993 aa15.19■□□□□ 0.02
HDAC4-208ENST00000463007 NUCB2P80303 420 aa15.19■□□□□ 0.02
HDAC4-208ENST00000463007 TSC1Q92574 1164 aa15.19■□□□□ 0.02
HDAC4-208ENST00000463007 TMEM63CQ9P1W3 806 aa15.19■□□□□ 0.02
HDAC4-208ENST00000463007 FAM177BA6PVY3 158 aa15.18■□□□□ 0.02
HDAC4-208ENST00000463007 AMPHP49418 695 aa15.18■□□□□ 0.02
HDAC4-208ENST00000463007 MAP3K5Q99683 1374 aa15.18■□□□□ 0.02
HDAC4-208ENST00000463007 LMTK3Q96Q04 1460 aa15.18■□□□□ 0.02
HDAC4-208ENST00000463007 ANKLE2Q86XL3 938 aa15.18■□□□□ 0.02
HDAC4-208ENST00000463007 PRDM10Q9NQV6 1147 aa15.18■□□□□ 0.02
HDAC4-208ENST00000463007 PODXL2Q9NZ53 605 aa15.18■□□□□ 0.02
HDAC4-208ENST00000463007 SIPA1L3O60292 1781 aaPredicted RBP15.18■□□□□ 0.02
HDAC4-208ENST00000463007 NPHP4O75161 1426 aaPredicted RBP15.18■□□□□ 0.02
HDAC4-208ENST00000463007 PXDNLA1KZ92 1463 aa15.18■□□□□ 0.02
HDAC4-208ENST00000463007 UQCRHLA0A096LP55 91 aa15.18■□□□□ 0.02
HDAC4-208ENST00000463007 UQCRHP07919 91 aa15.18■□□□□ 0.02
HDAC4-208ENST00000463007 CEP85Q6P2H3 762 aa15.18■□□□□ 0.02
HDAC4-208ENST00000463007 PHF8Q9UPP1 1060 aa15.18■□□□□ 0.02
HDAC4-208ENST00000463007 MAP4K4O95819 1239 aaPredicted RBP15.17■□□□□ 0.02
HDAC4-208ENST00000463007 PLPPR3Q6T4P5 718 aa15.17■□□□□ 0.02
HDAC4-208ENST00000463007 ANO2Q9NQ90 1003 aa15.17■□□□□ 0.02
HDAC4-208ENST00000463007 ALS2Q96Q42 1657 aa15.17■□□□□ 0.02
HDAC4-208ENST00000463007 BABAM1Q9NWV8 329 aa15.17■□□□□ 0.02
HDAC4-208ENST00000463007 KIF1AQ12756 1690 aa15.16■□□□□ 0.02
HDAC4-208ENST00000463007 SLC4A2P04920 1241 aa15.16■□□□□ 0.02
HDAC4-208ENST00000463007 TPM2P07951 284 aa15.16■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 69 ms