RNA–Protein interactions for RNA: ENST00000461819.5

CCDC28B-203, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 5

Gene CCDC28B, Length 780 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-203ENST00000461819 PAPPAQ13219 1627 aa30.24■■■□□ 2.43
CCDC28B-203ENST00000461819 C5P01031 1676 aa30.23■■■□□ 2.43
CCDC28B-203ENST00000461819 CCDC146Q8IYE0 955 aa30.23■■■□□ 2.43
CCDC28B-203ENST00000461819 TAF1LQ8IZX4 1826 aa30.22■■■□□ 2.43
CCDC28B-203ENST00000461819 NFE2L2Q16236 605 aa30.22■■■□□ 2.43
CCDC28B-203ENST00000461819 TEFQ10587 303 aa30.21■■■□□ 2.43
CCDC28B-203ENST00000461819 IL17REQ8NFR9 667 aa30.21■■■□□ 2.43
CCDC28B-203ENST00000461819 ATG3Q9NT62 314 aa30.21■■■□□ 2.43
CCDC28B-203ENST00000461819 LRRC4BQ9NT99 713 aa30.21■■■□□ 2.43
CCDC28B-203ENST00000461819 KCNQ4P56696 695 aa30.2■■■□□ 2.43
CCDC28B-203ENST00000461819 RUNDC1Q96C34 613 aa30.19■■■□□ 2.42
CCDC28B-203ENST00000461819 CEMIPQ8WUJ3 1361 aa30.18■■■□□ 2.42
CCDC28B-203ENST00000461819 PSDA5PKW4 1024 aaPredicted RBP30.18■■■□□ 2.42
CCDC28B-203ENST00000461819 R3HDM1Q15032 1099 aaKnown RBP30.18■■■□□ 2.42
CCDC28B-203ENST00000461819 HTATSF1O43719 755 aaKnown RBP30.17■■■□□ 2.42
CCDC28B-203ENST00000461819 MCM10Q7L590 875 aa30.17■■■□□ 2.42
CCDC28B-203ENST00000461819 ANO8Q9HCE9 1232 aaPredicted RBP30.17■■■□□ 2.42
CCDC28B-203ENST00000461819 STK32BQ9NY57 414 aa30.17■■■□□ 2.42
CCDC28B-203ENST00000461819 ZNF831Q5JPB2 1677 aa30.15■■■□□ 2.42
CCDC28B-203ENST00000461819 LOC102724428A0A0B4J2F2 783 aa30.15■■■□□ 2.42
CCDC28B-203ENST00000461819 SIK1P57059 783 aa30.15■■■□□ 2.42
CCDC28B-203ENST00000461819 RBM42Q9BTD8 480 aaKnown RBP30.15■■■□□ 2.42
CCDC28B-203ENST00000461819 DCTN1Q14203 1278 aa30.14■■■□□ 2.42
CCDC28B-203ENST00000461819 UBR2Q8IWV8 1755 aa30.13■■■□□ 2.41
CCDC28B-203ENST00000461819 TUBGCP6Q96RT7 1819 aa30.12■■■□□ 2.41
CCDC28B-203ENST00000461819 TMPOP42166 694 aaKnown RBP30.12■■■□□ 2.41
CCDC28B-203ENST00000461819 RIPK4P57078 832 aa30.12■■■□□ 2.41
CCDC28B-203ENST00000461819 DIEXFQ68CQ4 756 aaKnown RBP30.12■■■□□ 2.41
CCDC28B-203ENST00000461819 PNISRQ8TF01 805 aaKnown RBP30.12■■■□□ 2.41
CCDC28B-203ENST00000461819 C4BP0C0L5 1744 aa30.12■■■□□ 2.41
CCDC28B-203ENST00000461819 PTCD1O75127 700 aaKnown RBP30.11■■■□□ 2.41
CCDC28B-203ENST00000461819 HMGB2P26583 209 aaKnown RBP30.11■■■□□ 2.41
CCDC28B-203ENST00000461819 ATP6V1AP38606 617 aa30.11■■■□□ 2.41
CCDC28B-203ENST00000461819 SLC15A2Q16348 729 aa30.11■■■□□ 2.41
CCDC28B-203ENST00000461819 RRP7AQ9Y3A4 280 aaKnown RBP30.11■■■□□ 2.41
CCDC28B-203ENST00000461819 SLC39A6Q13433 755 aa30.1■■■□□ 2.41
CCDC28B-203ENST00000461819 COL5A3P25940 1745 aaPredicted RBP30.1■■■□□ 2.41
CCDC28B-203ENST00000461819 QSER1Q2KHR3 1735 aa30.1■■■□□ 2.41
CCDC28B-203ENST00000461819 LMOD3Q0VAK6 560 aa30.09■■■□□ 2.41
CCDC28B-203ENST00000461819 NEUROD2Q15784 382 aa30.09■■■□□ 2.41
CCDC28B-203ENST00000461819 ZNF827Q17R98 1081 aa30.09■■■□□ 2.41
CCDC28B-203ENST00000461819 TTC5Q8N0Z6 440 aa30.09■■■□□ 2.41
CCDC28B-203ENST00000461819 TJP1Q07157 1748 aa30.08■■■□□ 2.41
CCDC28B-203ENST00000461819 CICQ96RK0 1608 aaPredicted RBP30.07■■■□□ 2.4
CCDC28B-203ENST00000461819 KCPQ6ZWJ8 1503 aa30.07■■■□□ 2.4
CCDC28B-203ENST00000461819 BTBD11A6QL63 1104 aa30.06■■■□□ 2.4
CCDC28B-203ENST00000461819 AKT1S1Q96B36 256 aa30.06■■■□□ 2.4
CCDC28B-203ENST00000461819 ITPK1Q13572 414 aa30.05■■■□□ 2.4
CCDC28B-203ENST00000461819 THUMPD2Q9BTF0 503 aaKnown RBP30.05■■■□□ 2.4
CCDC28B-203ENST00000461819 CASZ1Q86V15 1759 aa30.05■■■□□ 2.4
CCDC28B-203ENST00000461819 SLC4A9Q96Q91 983 aa30.04■■■□□ 2.4
CCDC28B-203ENST00000461819 TFCP2L1Q9NZI6 479 aa30.04■■■□□ 2.4
CCDC28B-203ENST00000461819 APAF1O14727 1248 aa30.03■■■□□ 2.4
CCDC28B-203ENST00000461819 ZNF790Q6PG37 636 aa30.03■■■□□ 2.4
CCDC28B-203ENST00000461819 LINC00116Q8NCU8 138 aa30.03■■■□□ 2.4
CCDC28B-203ENST00000461819 AK7Q96M32 723 aa30.03■■■□□ 2.4
CCDC28B-203ENST00000461819 KDM3BQ7LBC6 1761 aa30.03■■■□□ 2.4
CCDC28B-203ENST00000461819 UBR3Q6ZT12 1888 aa30.02■■■□□ 2.4
CCDC28B-203ENST00000461819 FAM9BQ8IZU0 186 aa30.02■■■□□ 2.4
CCDC28B-203ENST00000461819 TAF7Q15545 349 aaPredicted RBP30.01■■■□□ 2.39
CCDC28B-203ENST00000461819 CCER2I3L3R5 266 aa29.97■■■□□ 2.39
CCDC28B-203ENST00000461819 ZNF496Q96IT1 587 aaPredicted RBP29.97■■■□□ 2.39
CCDC28B-203ENST00000461819 FMNL2Q96PY5 1086 aa29.97■■■□□ 2.39
CCDC28B-203ENST00000461819 TRIM35Q9UPQ4 493 aa29.97■■■□□ 2.39
CCDC28B-203ENST00000461819 MYH14Q7Z406 1995 aaKnown RBP29.96■■■□□ 2.39
CCDC28B-203ENST00000461819 VSIG10Q8N0Z9 540 aa29.96■■■□□ 2.39
CCDC28B-203ENST00000461819 PNPLA7Q6ZV29 1317 aa29.96■■■□□ 2.39
CCDC28B-203ENST00000461819 HEG1Q9ULI3 1381 aa29.95■■■□□ 2.39
CCDC28B-203ENST00000461819 KCNQ3O43525 872 aa29.95■■■□□ 2.39
CCDC28B-203ENST00000461819 DNAJC10Q8IXB1 793 aa29.95■■■□□ 2.39
CCDC28B-203ENST00000461819 PDGFDQ9GZP0 370 aaPredicted RBP29.95■■■□□ 2.39
CCDC28B-203ENST00000461819 MIS18AQ9NYP9 233 aa29.95■■■□□ 2.39
CCDC28B-203ENST00000461819 GNPATO15228 680 aa29.94■■■□□ 2.38
CCDC28B-203ENST00000461819 CNTNAP4Q9C0A0 1308 aa29.94■■■□□ 2.38
CCDC28B-203ENST00000461819 SENP3-EIF4A1A0A087X0R7 540 aa29.92■■■□□ 2.38
CCDC28B-203ENST00000461819 MSH5O43196 834 aa29.92■■■□□ 2.38
CCDC28B-203ENST00000461819 PHF14O94880 888 aa29.91■■■□□ 2.38
CCDC28B-203ENST00000461819 CRKLP46109 303 aaKnown RBP29.91■■■□□ 2.38
CCDC28B-203ENST00000461819 TSPYL4Q9UJ04 414 aa29.91■■■□□ 2.38
CCDC28B-203ENST00000461819 LRP5O75197 1615 aa29.91■■■□□ 2.38
CCDC28B-203ENST00000461819 RC3H1Q5TC82 1133 aaKnown RBP29.9■■■□□ 2.38
CCDC28B-203ENST00000461819 MIER1Q8N108 512 aa29.9■■■□□ 2.38
CCDC28B-203ENST00000461819 FLAD1Q8NFF5 587 aa29.9■■■□□ 2.38
CCDC28B-203ENST00000461819 LAMB4A4D0S4 1761 aa29.89■■■□□ 2.38
CCDC28B-203ENST00000461819 ZBTB7AO95365 584 aa29.88■■■□□ 2.37
CCDC28B-203ENST00000461819 SSFA2P28290 1259 aa29.88■■■□□ 2.37
CCDC28B-203ENST00000461819 TEX13AQ9BXU3 409 aaPredicted RBP29.88■■■□□ 2.37
CCDC28B-203ENST00000461819 RTCBQ9Y3I0 505 aaKnown RBP29.88■■■□□ 2.37
CCDC28B-203ENST00000461819 LAS1LQ9Y4W2 734 aaKnown RBP29.88■■■□□ 2.37
CCDC28B-203ENST00000461819 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP29.87■■■□□ 2.37
CCDC28B-203ENST00000461819 STARD3NLO95772 234 aa29.87■■■□□ 2.37
CCDC28B-203ENST00000461819 CYP19A1P11511 503 aaPredicted RBP29.87■■■□□ 2.37
CCDC28B-203ENST00000461819 COL23A1Q86Y22 540 aaPredicted RBP29.87■■■□□ 2.37
CCDC28B-203ENST00000461819 CCDC87Q9NVE4 849 aa29.87■■■□□ 2.37
CCDC28B-203ENST00000461819 C4AP0C0L4 1744 aa29.86■■■□□ 2.37
CCDC28B-203ENST00000461819 CALD1Q05682 793 aaKnown RBP29.86■■■□□ 2.37
CCDC28B-203ENST00000461819 AMIGO3Q86WK7 504 aa29.86■■■□□ 2.37
CCDC28B-203ENST00000461819 BABAM1Q9NWV8 329 aa29.86■■■□□ 2.37
CCDC28B-203ENST00000461819 SMIM5Q71RC9 77 aa29.85■■■□□ 2.37
CCDC28B-203ENST00000461819 RPS6KA4O75676 772 aa29.84■■■□□ 2.37
Retrieved 100 of 20,778 RNA–protein pairs in 102.7 ms