RNA–Protein interactions for RNA: ENST00000460801.5

PTPRN-210, Transcript of protein tyrosine phosphatase, receptor type N, humanhuman

TSL 2

Gene PTPRN, Length 2,239 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRN-210ENST00000460801 HOXB7P09629 217 aa17.4■□□□□ 0.38
PTPRN-210ENST00000460801 ERBB3P21860 1342 aa17.4■□□□□ 0.38
PTPRN-210ENST00000460801 PXDNQ92626 1479 aa17.4■□□□□ 0.38
PTPRN-210ENST00000460801 ZC3H6P61129 1189 aaKnown RBP17.4■□□□□ 0.38
PTPRN-210ENST00000460801 FKBP5Q13451 457 aaPredicted RBP17.4■□□□□ 0.38
PTPRN-210ENST00000460801 NECTIN2Q92692 538 aa17.4■□□□□ 0.38
PTPRN-210ENST00000460801 DDX17Q92841 729 aaKnown RBP17.4■□□□□ 0.38
PTPRN-210ENST00000460801 NPHP3Q7Z494 1330 aa17.4■□□□□ 0.38
PTPRN-210ENST00000460801 RNMTO43148 476 aaKnown RBP17.39■□□□□ 0.37
PTPRN-210ENST00000460801 HDGFL1Q5TGJ6 251 aa17.39■□□□□ 0.37
PTPRN-210ENST00000460801 LMTK3Q96Q04 1460 aa17.39■□□□□ 0.37
PTPRN-210ENST00000460801 TEFQ10587 303 aa17.39■□□□□ 0.37
PTPRN-210ENST00000460801 C1orf141Q5JVX7 400 aa17.39■□□□□ 0.37
PTPRN-210ENST00000460801 MPRIPQ6WCQ1 1025 aa17.39■□□□□ 0.37
PTPRN-210ENST00000460801 N4BP2Q86UW6 1770 aaPredicted RBP17.38■□□□□ 0.37
PTPRN-210ENST00000460801 PXDNLA1KZ92 1463 aa17.38■□□□□ 0.37
PTPRN-210ENST00000460801 CHMP4AQ9BY43 222 aa17.37■□□□□ 0.37
PTPRN-210ENST00000460801 COL18A1P39060 1754 aa17.37■□□□□ 0.37
PTPRN-210ENST00000460801 BTBD11A6QL63 1104 aa17.37■□□□□ 0.37
PTPRN-210ENST00000460801 MFAP1P55081 439 aaKnown RBP17.37■□□□□ 0.37
PTPRN-210ENST00000460801 C22orf23Q9BZE7 217 aa17.37■□□□□ 0.37
PTPRN-210ENST00000460801 XIRP1Q702N8 1843 aaKnown RBP17.37■□□□□ 0.37
PTPRN-210ENST00000460801 TNS3Q68CZ2 1445 aa17.37■□□□□ 0.37
PTPRN-210ENST00000460801 KCNQ3O43525 872 aa17.36■□□□□ 0.37
PTPRN-210ENST00000460801 BECN1Q14457 450 aa17.36■□□□□ 0.37
PTPRN-210ENST00000460801 PLEKHM2Q8IWE5 1019 aa17.36■□□□□ 0.37
PTPRN-210ENST00000460801 HMMRO75330 724 aa17.36■□□□□ 0.37
PTPRN-210ENST00000460801 GNAI2P04899 355 aa17.36■□□□□ 0.37
PTPRN-210ENST00000460801 ADAMTS7Q9UKP4 1686 aa17.36■□□□□ 0.37
PTPRN-210ENST00000460801 GNAI3P08754 354 aa17.35■□□□□ 0.37
PTPRN-210ENST00000460801 PHAXQ9H814 394 aaKnown RBP17.35■□□□□ 0.37
PTPRN-210ENST00000460801 CRYBG1Q9Y4K1 1723 aa17.34■□□□□ 0.37
PTPRN-210ENST00000460801 SPATA31A3Q5VYP0 1347 aa17.34■□□□□ 0.37
PTPRN-210ENST00000460801 ABCC6O95255 1503 aa17.34■□□□□ 0.37
PTPRN-210ENST00000460801 SIPA1L3O60292 1781 aaPredicted RBP17.34■□□□□ 0.37
PTPRN-210ENST00000460801 HEG1Q9ULI3 1381 aa17.33■□□□□ 0.37
PTPRN-210ENST00000460801 STRCQ7RTU9 1775 aa17.33■□□□□ 0.36
PTPRN-210ENST00000460801 EIF2S2P20042 333 aaKnown RBP17.33■□□□□ 0.36
PTPRN-210ENST00000460801 USP35Q9P2H5 1018 aa17.33■□□□□ 0.36
PTPRN-210ENST00000460801 GSPT1P15170 499 aaKnown RBP17.32■□□□□ 0.36
PTPRN-210ENST00000460801 RTL5Q5HYW3 569 aaPredicted RBP17.32■□□□□ 0.36
PTPRN-210ENST00000460801 C16orf71Q8IYS4 520 aaPredicted RBP17.32■□□□□ 0.36
PTPRN-210ENST00000460801 CABLES1Q8TDN4 633 aa17.32■□□□□ 0.36
PTPRN-210ENST00000460801 RAPGEF4Q8WZA2 1011 aa17.32■□□□□ 0.36
PTPRN-210ENST00000460801 NLRP2Q9NX02 1062 aa17.32■□□□□ 0.36
PTPRN-210ENST00000460801 RBM25P49756 843 aaKnown RBP17.31■□□□□ 0.36
PTPRN-210ENST00000460801 USP44Q9H0E7 712 aa17.31■□□□□ 0.36
PTPRN-210ENST00000460801 CHPF2Q9P2E5 772 aa17.31■□□□□ 0.36
PTPRN-210ENST00000460801 ATP8B2P98198 1209 aa17.31■□□□□ 0.36
PTPRN-210ENST00000460801 TTC22Q5TAA0 569 aa17.31■□□□□ 0.36
PTPRN-210ENST00000460801 TBC1D9Q6ZT07 1266 aa17.31■□□□□ 0.36
PTPRN-210ENST00000460801 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP17.31■□□□□ 0.36
PTPRN-210ENST00000460801 CPDO75976 1380 aa17.3■□□□□ 0.36
PTPRN-210ENST00000460801 PLEKHG2Q9H7P9 1386 aa17.3■□□□□ 0.36
PTPRN-210ENST00000460801 BRINP3Q76B58 766 aa17.3■□□□□ 0.36
PTPRN-210ENST00000460801 TBC1D2Q9BYX2 928 aa17.3■□□□□ 0.36
PTPRN-210ENST00000460801 GIGYF1O75420 1035 aaPredicted RBP17.29■□□□□ 0.36
PTPRN-210ENST00000460801 KDM4FA0A1W2PPD8 638 aa17.29■□□□□ 0.36
PTPRN-210ENST00000460801 SMARCA5O60264 1052 aaPredicted RBP17.29■□□□□ 0.36
PTPRN-210ENST00000460801 TATP17735 454 aaPredicted RBP17.29■□□□□ 0.36
PTPRN-210ENST00000460801 OTUD7AQ8TE49 926 aaPredicted RBP17.29■□□□□ 0.36
PTPRN-210ENST00000460801 CDC45O75419 566 aa17.28■□□□□ 0.36
PTPRN-210ENST00000460801 DBF4Q9UBU7 674 aaPredicted RBP17.28■□□□□ 0.36
PTPRN-210ENST00000460801 SRCIN1Q9C0H9 1055 aa17.28■□□□□ 0.36
PTPRN-210ENST00000460801 SPG7Q9UQ90 795 aa17.28■□□□□ 0.36
PTPRN-210ENST00000460801 MEGF6O75095 1541 aa17.28■□□□□ 0.36
PTPRN-210ENST00000460801 SCN11AQ9UI33 1791 aa17.28■□□□□ 0.36
PTPRN-210ENST00000460801 PNMA6EA0A0J9YXQ4 647 aa17.27■□□□□ 0.36
PTPRN-210ENST00000460801 APBB1O00213 710 aa17.27■□□□□ 0.36
PTPRN-210ENST00000460801 CHRNA2Q15822 529 aa17.27■□□□□ 0.36
PTPRN-210ENST00000460801 LRRFIP2Q9Y608 721 aaKnown RBP17.27■□□□□ 0.36
PTPRN-210ENST00000460801 UBTFL1P0CB47 393 aaPredicted RBP17.27■□□□□ 0.35
PTPRN-210ENST00000460801 PHKG2P15735 406 aa17.27■□□□□ 0.35
PTPRN-210ENST00000460801 DNAAF4Q8WXU2 420 aa17.27■□□□□ 0.35
PTPRN-210ENST00000460801 KDM6AO15550 1401 aaPredicted RBP17.26■□□□□ 0.35
PTPRN-210ENST00000460801 PI4KAP2A4QPH2 592 aa17.26■□□□□ 0.35
PTPRN-210ENST00000460801 CSB-PGBD3P0DP91 1061 aa17.26■□□□□ 0.35
PTPRN-210ENST00000460801 BEND3Q5T5X7 828 aa17.26■□□□□ 0.35
PTPRN-210ENST00000460801 PI4KAP1Q8N8J0 262 aa17.26■□□□□ 0.35
PTPRN-210ENST00000460801 NFKBIBQ15653 356 aa17.25■□□□□ 0.35
PTPRN-210ENST00000460801 OSBPL3Q9H4L5 887 aa17.25■□□□□ 0.35
PTPRN-210ENST00000460801 ADCY9O60503 1353 aa17.25■□□□□ 0.35
PTPRN-210ENST00000460801 ANXA1P04083 346 aa17.25■□□□□ 0.35
PTPRN-210ENST00000460801 SLC52A2Q9HAB3 445 aa17.25■□□□□ 0.35
PTPRN-210ENST00000460801 EXOC6BQ9Y2D4 811 aa17.25■□□□□ 0.35
PTPRN-210ENST00000460801 IFNL2Q8IZJ0 200 aa17.24■□□□□ 0.35
PTPRN-210ENST00000460801 SLAIN2Q9P270 581 aa17.24■□□□□ 0.35
PTPRN-210ENST00000460801 IBTKQ9P2D0 1353 aaPredicted RBP17.24■□□□□ 0.35
PTPRN-210ENST00000460801 SOS2Q07890 1332 aaPredicted RBP17.24■□□□□ 0.35
PTPRN-210ENST00000460801 ZNF335Q9H4Z2 1342 aaPredicted RBP17.24■□□□□ 0.35
PTPRN-210ENST00000460801 EIF5BO60841 1220 aaKnown RBP17.24■□□□□ 0.35
PTPRN-210ENST00000460801 SSH3Q8TE77 659 aa17.24■□□□□ 0.35
PTPRN-210ENST00000460801 ANTXR1Q9H6X2 564 aa17.24■□□□□ 0.35
PTPRN-210ENST00000460801 LRRCC1Q9C099 1032 aa17.23■□□□□ 0.35
PTPRN-210ENST00000460801 BCL11AQ9H165 835 aa17.23■□□□□ 0.35
PTPRN-210ENST00000460801 PKD1L3Q7Z443 1732 aa17.23■□□□□ 0.35
PTPRN-210ENST00000460801 SALL3Q9BXA9 1300 aa17.23■□□□□ 0.35
PTPRN-210ENST00000460801 PRAMEF22A3QJZ6 481 aa17.23■□□□□ 0.35
PTPRN-210ENST00000460801 SDSP20132 328 aa17.23■□□□□ 0.35
PTPRN-210ENST00000460801 ZNF790Q6PG37 636 aa17.23■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms