RNA–Protein interactions for RNA: ENST00000460593.1

CPSF3-202, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 1 (best) BASIC

Gene CPSF3, Length 3,157 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-202ENST00000460593 AEBP1Q8IUX7 1158 aa14.12□□□□□ -0.15
CPSF3-202ENST00000460593 CDK19Q9BWU1 502 aa14.12□□□□□ -0.15
CPSF3-202ENST00000460593 ZCCHC11Q5TAX3 1644 aaKnown RBP14.12□□□□□ -0.15
CPSF3-202ENST00000460593 EFCAB6Q5THR3 1501 aa14.12□□□□□ -0.15
CPSF3-202ENST00000460593 NPATQ14207 1427 aa14.12□□□□□ -0.15
CPSF3-202ENST00000460593 VGLL3A8MV65 326 aa14.12□□□□□ -0.15
CPSF3-202ENST00000460593 C16orf45Q96MC5 204 aaPredicted RBP14.12□□□□□ -0.15
CPSF3-202ENST00000460593 CAMSAP1Q5T5Y3 1602 aa14.11□□□□□ -0.15
CPSF3-202ENST00000460593 MX1P20591 662 aa14.11□□□□□ -0.15
CPSF3-202ENST00000460593 RPAP1Q9BWH6 1393 aaPredicted RBP14.11□□□□□ -0.15
CPSF3-202ENST00000460593 NME9Q86XW9 330 aa14.11□□□□□ -0.15
CPSF3-202ENST00000460593 CD163L1Q9NR16 1453 aa14.11□□□□□ -0.15
CPSF3-202ENST00000460593 SLC4A2P04920 1241 aa14.1□□□□□ -0.15
CPSF3-202ENST00000460593 GTF2E1P29083 439 aaPredicted RBP14.1□□□□□ -0.15
CPSF3-202ENST00000460593 WDR33Q9C0J8 1336 aaKnown RBP14.1□□□□□ -0.15
CPSF3-202ENST00000460593 CHMLP26374 656 aa14.1□□□□□ -0.15
CPSF3-202ENST00000460593 CAMK4Q16566 473 aa14.1□□□□□ -0.15
CPSF3-202ENST00000460593 UVSSAQ2YD98 709 aa14.1□□□□□ -0.15
CPSF3-202ENST00000460593 FAM184AQ8NB25 1140 aa14.1□□□□□ -0.15
CPSF3-202ENST00000460593 NECTIN2Q92692 538 aa14.1□□□□□ -0.15
CPSF3-202ENST00000460593 NRBP1Q9UHY1 535 aa14.1□□□□□ -0.15
CPSF3-202ENST00000460593 RGS12O14924 1447 aa14.1□□□□□ -0.15
CPSF3-202ENST00000460593 IL13P35225 146 aa14.1□□□□□ -0.15
CPSF3-202ENST00000460593 IL1RAPL2Q9NP60 686 aa14.1□□□□□ -0.15
CPSF3-202ENST00000460593 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP14.09□□□□□ -0.15
CPSF3-202ENST00000460593 LETM1O95202 739 aaPredicted RBP14.09□□□□□ -0.15
CPSF3-202ENST00000460593 MCCP23508 829 aa14.09□□□□□ -0.15
CPSF3-202ENST00000460593 DNM1Q05193 864 aaKnown RBP14.09□□□□□ -0.15
CPSF3-202ENST00000460593 CHAF1AQ13111 956 aaPredicted RBP14.09□□□□□ -0.15
CPSF3-202ENST00000460593 NCBP1Q09161 790 aaKnown RBP14.09□□□□□ -0.15
CPSF3-202ENST00000460593 NOL12Q9UGY1 213 aaKnown RBP eCLIP14.09□□□□□ -0.15
CPSF3-202ENST00000460593 V9GYY5 206 aaPredicted RBP14.09□□□□□ -0.15
CPSF3-202ENST00000460593 FANCAO15360 1455 aa14.09□□□□□ -0.15
CPSF3-202ENST00000460593 VGFO15240 615 aaPredicted RBP14.08□□□□□ -0.15
CPSF3-202ENST00000460593 KIF20AO95235 890 aa14.08□□□□□ -0.15
CPSF3-202ENST00000460593 LARGE1O95461 756 aa14.08□□□□□ -0.15
CPSF3-202ENST00000460593 ANKRD7Q92527 254 aa14.08□□□□□ -0.15
CPSF3-202ENST00000460593 NCKAP5LQ9HCH0 1330 aa14.08□□□□□ -0.16
CPSF3-202ENST00000460593 PNMA6EA0A0J9YXQ4 647 aa14.08□□□□□ -0.16
CPSF3-202ENST00000460593 SYT1P21579 422 aa14.08□□□□□ -0.16
CPSF3-202ENST00000460593 FAM173BQ6P4H8 233 aa14.08□□□□□ -0.16
CPSF3-202ENST00000460593 RIMS2Q9UQ26 1411 aa14.08□□□□□ -0.16
CPSF3-202ENST00000460593 WAPLQ7Z5K2 1190 aa14.08□□□□□ -0.16
CPSF3-202ENST00000460593 LUZP1Q86V48 1076 aa14.08□□□□□ -0.16
CPSF3-202ENST00000460593 NUTM1Q86Y26 1132 aa14.08□□□□□ -0.16
CPSF3-202ENST00000460593 INTS4Q96HW7 963 aaKnown RBP14.08□□□□□ -0.16
CPSF3-202ENST00000460593 ZSCAN22P10073 491 aaPredicted RBP14.07□□□□□ -0.16
CPSF3-202ENST00000460593 MCM2P49736 904 aa14.07□□□□□ -0.16
CPSF3-202ENST00000460593 ZNF592Q92610 1267 aa14.07□□□□□ -0.16
CPSF3-202ENST00000460593 ARHGEF28Q8N1W1 1705 aaKnown RBP14.07□□□□□ -0.16
CPSF3-202ENST00000460593 DIAPH3Q9NSV4 1193 aa14.07□□□□□ -0.16
CPSF3-202ENST00000460593 CKAP2LQ8IYA6 745 aa14.06□□□□□ -0.16
CPSF3-202ENST00000460593 FUCA2Q9BTY2 467 aa14.06□□□□□ -0.16
CPSF3-202ENST00000460593 REREQ9P2R6 1566 aa14.06□□□□□ -0.16
CPSF3-202ENST00000460593 PPLO60437 1756 aa14.06□□□□□ -0.16
CPSF3-202ENST00000460593 CCDC186Q7Z3E2 898 aa14.06□□□□□ -0.16
CPSF3-202ENST00000460593 RASEFQ8IZ41 740 aa14.06□□□□□ -0.16
CPSF3-202ENST00000460593 SOX12O15370 315 aa14.06□□□□□ -0.16
CPSF3-202ENST00000460593 STX6O43752 255 aa14.06□□□□□ -0.16
CPSF3-202ENST00000460593 AK2P54819 239 aa14.06□□□□□ -0.16
CPSF3-202ENST00000460593 UBE2HP62256 183 aa14.06□□□□□ -0.16
CPSF3-202ENST00000460593 IDI1Q13907 227 aa14.06□□□□□ -0.16
CPSF3-202ENST00000460593 FERMT3Q86UX7 667 aa14.06□□□□□ -0.16
CPSF3-202ENST00000460593 DRC7Q8IY82 874 aa14.06□□□□□ -0.16
CPSF3-202ENST00000460593 PUS7Q96PZ0 661 aaKnown RBP14.06□□□□□ -0.16
CPSF3-202ENST00000460593 CCDC83Q8IWF9 413 aa14.05□□□□□ -0.16
CPSF3-202ENST00000460593 ABCC3O15438 1527 aa14.05□□□□□ -0.16
CPSF3-202ENST00000460593 VPS37CA5D8V6 355 aaPredicted RBP14.05□□□□□ -0.16
CPSF3-202ENST00000460593 NEURL4Q96JN8 1562 aa14.05□□□□□ -0.16
CPSF3-202ENST00000460593 HMMRO75330 724 aa14.04□□□□□ -0.16
CPSF3-202ENST00000460593 TMEM51Q9NW97 253 aa14.04□□□□□ -0.16
CPSF3-202ENST00000460593 CTIFO43310 598 aaKnown RBP14.04□□□□□ -0.16
CPSF3-202ENST00000460593 F13A1P00488 732 aa14.04□□□□□ -0.16
CPSF3-202ENST00000460593 RUFY3Q7L099 469 aa14.04□□□□□ -0.16
CPSF3-202ENST00000460593 LRRCC1Q9C099 1032 aa14.04□□□□□ -0.16
CPSF3-202ENST00000460593 SPG7Q9UQ90 795 aa14.04□□□□□ -0.16
CPSF3-202ENST00000460593 YTHDC2Q9H6S0 1430 aaKnown RBP14.04□□□□□ -0.16
CPSF3-202ENST00000460593 SULT6B1Q6IMI4 303 aa14.04□□□□□ -0.16
CPSF3-202ENST00000460593 OSBPL3Q9H4L5 887 aa14.04□□□□□ -0.16
CPSF3-202ENST00000460593 NPHP1O15259 732 aa14.03□□□□□ -0.16
CPSF3-202ENST00000460593 ST7Q9NRC1 585 aa14.03□□□□□ -0.16
CPSF3-202ENST00000460593 SMC3Q9UQE7 1217 aa14.03□□□□□ -0.16
CPSF3-202ENST00000460593 YEATS2Q9ULM3 1422 aa14.03□□□□□ -0.16
CPSF3-202ENST00000460593 ERICH4A6NGS2 130 aa14.03□□□□□ -0.16
CPSF3-202ENST00000460593 CTNNA3Q9UI47 895 aa14.03□□□□□ -0.16
CPSF3-202ENST00000460593 FOXO3O43524 673 aa14.02□□□□□ -0.16
CPSF3-202ENST00000460593 RPGRIP1LQ68CZ1 1315 aa14.02□□□□□ -0.17
CPSF3-202ENST00000460593 TNNT1P13805 278 aa14.02□□□□□ -0.17
CPSF3-202ENST00000460593 LIG1P18858 919 aa14.02□□□□□ -0.17
CPSF3-202ENST00000460593 NECAB1Q8N987 351 aa14.02□□□□□ -0.17
CPSF3-202ENST00000460593 SNX14Q9Y5W7 946 aa14.02□□□□□ -0.17
CPSF3-202ENST00000460593 SALL3Q9BXA9 1300 aa14.02□□□□□ -0.17
CPSF3-202ENST00000460593 GJB2P29033 226 aa14.02□□□□□ -0.17
CPSF3-202ENST00000460593 COL9A3Q14050 684 aaPredicted RBP14.02□□□□□ -0.17
CPSF3-202ENST00000460593 ARID5BQ14865 1188 aa14.02□□□□□ -0.17
CPSF3-202ENST00000460593 TMEM87AQ8NBN3 555 aa14.02□□□□□ -0.17
CPSF3-202ENST00000460593 TRERF1Q96PN7 1200 aa14.01□□□□□ -0.17
CPSF3-202ENST00000460593 LMOD3Q0VAK6 560 aa14.01□□□□□ -0.17
CPSF3-202ENST00000460593 OGFRQ9NZT2 677 aa14.01□□□□□ -0.17
CPSF3-202ENST00000460593 HSPA4P34932 840 aa14□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 10 ms