RNA–Protein interactions for RNA: ENST00000459860.1

SSNA1-202, Transcript of SS nuclear autoantigen 1, humanhuman

TSL 1 (best)

Gene SSNA1, Length 1,170 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSNA1-202ENST00000459860 MAP3K5Q99683 1374 aa28.94■■■□□ 2.22
SSNA1-202ENST00000459860 KCNQ4P56696 695 aa28.94■■■□□ 2.22
SSNA1-202ENST00000459860 SMARCC1Q92922 1105 aaPredicted RBP28.94■■■□□ 2.22
SSNA1-202ENST00000459860 CABP4P57796 275 aa28.93■■■□□ 2.22
SSNA1-202ENST00000459860 PIGBQ92521 554 aa28.93■■■□□ 2.22
SSNA1-202ENST00000459860 PNNQ9H307 717 aaKnown RBP28.93■■■□□ 2.22
SSNA1-202ENST00000459860 PNPLA7Q6ZV29 1317 aa28.93■■■□□ 2.22
SSNA1-202ENST00000459860 PALLDQ8WX93 1383 aa28.92■■■□□ 2.22
SSNA1-202ENST00000459860 ANP32CO43423 234 aa28.92■■■□□ 2.22
SSNA1-202ENST00000459860 SLC16A10Q8TF71 515 aa28.91■■■□□ 2.22
SSNA1-202ENST00000459860 ADAMTS7Q9UKP4 1686 aa28.9■■■□□ 2.22
SSNA1-202ENST00000459860 CCNL1Q9UK58 526 aaPredicted RBP28.89■■■□□ 2.22
SSNA1-202ENST00000459860 GNAT3A8MTJ3 354 aa28.88■■■□□ 2.21
SSNA1-202ENST00000459860 WDR43Q15061 677 aaKnown RBP eCLIP28.88■■■□□ 2.21
SSNA1-202ENST00000459860 PHACTR3Q96KR7 559 aa28.88■■■□□ 2.21
SSNA1-202ENST00000459860 HMGB2P26583 209 aaKnown RBP28.87■■■□□ 2.21
SSNA1-202ENST00000459860 C5P01031 1676 aa28.86■■■□□ 2.21
SSNA1-202ENST00000459860 MRC1P22897 1456 aa28.86■■■□□ 2.21
SSNA1-202ENST00000459860 MAPK8IP3Q9UPT6 1336 aa28.86■■■□□ 2.21
SSNA1-202ENST00000459860 RNMTO43148 476 aaKnown RBP28.85■■■□□ 2.21
SSNA1-202ENST00000459860 TFCP2L1Q9NZI6 479 aa28.85■■■□□ 2.21
SSNA1-202ENST00000459860 TAF1LQ8IZX4 1826 aa28.84■■■□□ 2.21
SSNA1-202ENST00000459860 ZNF784Q8NCA9 323 aaPredicted RBP28.83■■■□□ 2.21
SSNA1-202ENST00000459860 NFATC2IPQ8NCF5 419 aa28.83■■■□□ 2.21
SSNA1-202ENST00000459860 LGR6Q9HBX8 967 aa28.83■■■□□ 2.21
SSNA1-202ENST00000459860 ASAP1Q9ULH1 1129 aa28.83■■■□□ 2.21
SSNA1-202ENST00000459860 SLC52A2Q9HAB3 445 aa28.82■■■□□ 2.2
SSNA1-202ENST00000459860 DLG5Q8TDM6 1919 aa28.82■■■□□ 2.2
SSNA1-202ENST00000459860 RTF1Q92541 710 aaKnown RBP28.81■■■□□ 2.2
SSNA1-202ENST00000459860 ATG3Q9NT62 314 aa28.81■■■□□ 2.2
SSNA1-202ENST00000459860 TEFQ10587 303 aa28.8■■■□□ 2.2
SSNA1-202ENST00000459860 POLD1P28340 1107 aa28.79■■■□□ 2.2
SSNA1-202ENST00000459860 PLEKHF1Q96S99 279 aa28.79■■■□□ 2.2
SSNA1-202ENST00000459860 QSER1Q2KHR3 1735 aa28.79■■■□□ 2.2
SSNA1-202ENST00000459860 ZNF831Q5JPB2 1677 aa28.79■■■□□ 2.2
SSNA1-202ENST00000459860 SIPA1L3O60292 1781 aaPredicted RBP28.78■■■□□ 2.2
SSNA1-202ENST00000459860 LOC102724428A0A0B4J2F2 783 aa28.78■■■□□ 2.2
SSNA1-202ENST00000459860 SIK1P57059 783 aa28.78■■■□□ 2.2
SSNA1-202ENST00000459860 COL23A1Q86Y22 540 aaPredicted RBP28.76■■■□□ 2.19
SSNA1-202ENST00000459860 RBM42Q9BTD8 480 aaKnown RBP28.76■■■□□ 2.19
SSNA1-202ENST00000459860 COL24A1Q17RW2 1714 aa28.76■■■□□ 2.19
SSNA1-202ENST00000459860 C4BP0C0L5 1744 aa28.75■■■□□ 2.19
SSNA1-202ENST00000459860 TUBGCP6Q96RT7 1819 aa28.75■■■□□ 2.19
SSNA1-202ENST00000459860 HTATSF1O43719 755 aaKnown RBP28.74■■■□□ 2.19
SSNA1-202ENST00000459860 ATP6V1AP38606 617 aa28.74■■■□□ 2.19
SSNA1-202ENST00000459860 NFE2L2Q16236 605 aa28.74■■■□□ 2.19
SSNA1-202ENST00000459860 IL17REQ8NFR9 667 aa28.74■■■□□ 2.19
SSNA1-202ENST00000459860 CEMIPQ8WUJ3 1361 aa28.74■■■□□ 2.19
SSNA1-202ENST00000459860 NLGN2Q8NFZ4 835 aa28.73■■■□□ 2.19
SSNA1-202ENST00000459860 GPR162Q16538 588 aa28.72■■■□□ 2.19
SSNA1-202ENST00000459860 KLHL34Q8N239 644 aa28.71■■■□□ 2.19
SSNA1-202ENST00000459860 ADAMTS8Q9UP79 889 aa28.71■■■□□ 2.19
SSNA1-202ENST00000459860 UBR2Q8IWV8 1755 aa28.7■■■□□ 2.19
SSNA1-202ENST00000459860 COL5A3P25940 1745 aaPredicted RBP28.7■■■□□ 2.19
SSNA1-202ENST00000459860 PTCD1O75127 700 aaKnown RBP28.7■■■□□ 2.18
SSNA1-202ENST00000459860 MCM10Q7L590 875 aa28.7■■■□□ 2.18
SSNA1-202ENST00000459860 TTC5Q8N0Z6 440 aa28.7■■■□□ 2.18
SSNA1-202ENST00000459860 CICQ96RK0 1608 aaPredicted RBP28.69■■■□□ 2.18
SSNA1-202ENST00000459860 CCDC146Q8IYE0 955 aa28.69■■■□□ 2.18
SSNA1-202ENST00000459860 RUNDC1Q96C34 613 aa28.69■■■□□ 2.18
SSNA1-202ENST00000459860 AK7Q96M32 723 aa28.69■■■□□ 2.18
SSNA1-202ENST00000459860 MRS2Q9HD23 443 aa28.69■■■□□ 2.18
SSNA1-202ENST00000459860 TJP1Q07157 1748 aa28.67■■■□□ 2.18
SSNA1-202ENST00000459860 GOLGB1Q14789 3259 aaKnown RBP28.66■■■□□ 2.18
SSNA1-202ENST00000459860 MSH5O43196 834 aa28.66■■■□□ 2.18
SSNA1-202ENST00000459860 SLC39A6Q13433 755 aa28.66■■■□□ 2.18
SSNA1-202ENST00000459860 ITPK1Q13572 414 aa28.66■■■□□ 2.18
SSNA1-202ENST00000459860 KCPQ6ZWJ8 1503 aa28.65■■■□□ 2.18
SSNA1-202ENST00000459860 LMOD3Q0VAK6 560 aa28.65■■■□□ 2.18
SSNA1-202ENST00000459860 DCTN1Q14203 1278 aa28.65■■■□□ 2.18
SSNA1-202ENST00000459860 LINC00116Q8NCU8 138 aa28.65■■■□□ 2.18
SSNA1-202ENST00000459860 UBR3Q6ZT12 1888 aa28.65■■■□□ 2.18
SSNA1-202ENST00000459860 BTBD11A6QL63 1104 aa28.64■■■□□ 2.18
SSNA1-202ENST00000459860 RIPK4P57078 832 aa28.64■■■□□ 2.18
SSNA1-202ENST00000459860 MSL1Q68DK7 614 aa28.64■■■□□ 2.18
SSNA1-202ENST00000459860 TMPOP42166 694 aaKnown RBP28.63■■■□□ 2.17
SSNA1-202ENST00000459860 CCDC184Q52MB2 194 aa28.63■■■□□ 2.17
SSNA1-202ENST00000459860 AMIGO3Q86WK7 504 aa28.63■■■□□ 2.17
SSNA1-202ENST00000459860 SLC4A9Q96Q91 983 aa28.63■■■□□ 2.17
SSNA1-202ENST00000459860 ZNF790Q6PG37 636 aa28.62■■■□□ 2.17
SSNA1-202ENST00000459860 FLAD1Q8NFF5 587 aa28.62■■■□□ 2.17
SSNA1-202ENST00000459860 YBX3P16989 372 aaKnown RBP eCLIP28.61■■■□□ 2.173e-6■□□□□ 9.7
SSNA1-202ENST00000459860 PELP1Q8IZL8 1130 aaKnown RBP28.61■■■□□ 2.17
SSNA1-202ENST00000459860 GNPATO15228 680 aa28.59■■■□□ 2.17
SSNA1-202ENST00000459860 NEUROD2Q15784 382 aa28.59■■■□□ 2.17
SSNA1-202ENST00000459860 CNTNAP4Q9C0A0 1308 aa28.59■■■□□ 2.17
SSNA1-202ENST00000459860 TAF7Q15545 349 aaPredicted RBP28.58■■■□□ 2.17
SSNA1-202ENST00000459860 VSIG10Q8N0Z9 540 aa28.58■■■□□ 2.17
SSNA1-202ENST00000459860 RRP7AQ9Y3A4 280 aaKnown RBP28.58■■■□□ 2.17
SSNA1-202ENST00000459860 PNISRQ8TF01 805 aaKnown RBP28.57■■■□□ 2.16
SSNA1-202ENST00000459860 FMNL2Q96PY5 1086 aa28.57■■■□□ 2.16
SSNA1-202ENST00000459860 KDM3BQ7LBC6 1761 aa28.57■■■□□ 2.16
SSNA1-202ENST00000459860 SSFA2P28290 1259 aa28.56■■■□□ 2.16
SSNA1-202ENST00000459860 RC3H1Q5TC82 1133 aaKnown RBP28.56■■■□□ 2.16
SSNA1-202ENST00000459860 HEG1Q9ULI3 1381 aa28.55■■■□□ 2.16
SSNA1-202ENST00000459860 PHF14O94880 888 aa28.55■■■□□ 2.16
SSNA1-202ENST00000459860 C1QTNF8P60827 252 aa28.55■■■□□ 2.16
SSNA1-202ENST00000459860 SMIM5Q71RC9 77 aa28.55■■■□□ 2.16
SSNA1-202ENST00000459860 DNAJC10Q8IXB1 793 aa28.55■■■□□ 2.16
SSNA1-202ENST00000459860 CD2APQ9Y5K6 639 aa28.55■■■□□ 2.16
Retrieved 100 of 20,778 RNA–protein pairs in 11.6 ms