RNA–Protein interactions for RNA: ENST00000454240.1

SMARCC1-203, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 1, humanhuman

TSL 3

Gene SMARCC1, Length 636 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCC1-203ENST00000454240 HTATSF1O43719 755 aaKnown RBP37.05■■■■□ 3.52
SMARCC1-203ENST00000454240 PNISRQ8TF01 805 aaKnown RBP37.05■■■■□ 3.52
SMARCC1-203ENST00000454240 RUNDC1Q96C34 613 aa37.05■■■■□ 3.52
SMARCC1-203ENST00000454240 LRRC4BQ9NT99 713 aa37.05■■■■□ 3.52
SMARCC1-203ENST00000454240 SIPA1L3O60292 1781 aaPredicted RBP37.04■■■■□ 3.52
SMARCC1-203ENST00000454240 CCDC146Q8IYE0 955 aa37.04■■■■□ 3.52
SMARCC1-203ENST00000454240 RTF1Q92541 710 aaKnown RBP37.02■■■■□ 3.52
SMARCC1-203ENST00000454240 PAPPAQ13219 1627 aa37■■■■□ 3.51
SMARCC1-203ENST00000454240 DIEXFQ68CQ4 756 aaKnown RBP36.99■■■■□ 3.51
SMARCC1-203ENST00000454240 CCNL1Q9UK58 526 aaPredicted RBP36.99■■■■□ 3.51
SMARCC1-203ENST00000454240 NBPF14Q5TI25 921 aa36.98■■■■□ 3.51
SMARCC1-203ENST00000454240 MCM10Q7L590 875 aa36.98■■■■□ 3.51
SMARCC1-203ENST00000454240 TAF1LQ8IZX4 1826 aa36.98■■■■□ 3.51
SMARCC1-203ENST00000454240 TMPOP42166 694 aaKnown RBP36.97■■■■□ 3.51
SMARCC1-203ENST00000454240 KCNQ4P56696 695 aa36.97■■■■□ 3.51
SMARCC1-203ENST00000454240 TEFQ10587 303 aa36.97■■■■□ 3.51
SMARCC1-203ENST00000454240 DCTN1Q14203 1278 aa36.96■■■■□ 3.51
SMARCC1-203ENST00000454240 LOC102724428A0A0B4J2F2 783 aa36.95■■■■□ 3.51
SMARCC1-203ENST00000454240 SIK1P57059 783 aa36.95■■■■□ 3.51
SMARCC1-203ENST00000454240 ZNF831Q5JPB2 1677 aa36.94■■■■□ 3.5
SMARCC1-203ENST00000454240 RIPK4P57078 832 aa36.94■■■■□ 3.5
SMARCC1-203ENST00000454240 ANO8Q9HCE9 1232 aaPredicted RBP36.94■■■■□ 3.5
SMARCC1-203ENST00000454240 C5P01031 1676 aa36.93■■■■□ 3.5
SMARCC1-203ENST00000454240 UBR2Q8IWV8 1755 aa36.89■■■■□ 3.5
SMARCC1-203ENST00000454240 SLC39A6Q13433 755 aa36.89■■■■□ 3.5
SMARCC1-203ENST00000454240 R3HDM1Q15032 1099 aaKnown RBP36.89■■■■□ 3.5
SMARCC1-203ENST00000454240 RRP7AQ9Y3A4 280 aaKnown RBP36.89■■■■□ 3.5
SMARCC1-203ENST00000454240 SLC4A9Q96Q91 983 aa36.88■■■■□ 3.49
SMARCC1-203ENST00000454240 RBM42Q9BTD8 480 aaKnown RBP36.88■■■■□ 3.49
SMARCC1-203ENST00000454240 STK32BQ9NY57 414 aa36.88■■■■□ 3.49
SMARCC1-203ENST00000454240 HMGB2P26583 209 aaKnown RBP36.87■■■■□ 3.49
SMARCC1-203ENST00000454240 SLC15A2Q16348 729 aa36.87■■■■□ 3.49
SMARCC1-203ENST00000454240 AKT1S1Q96B36 256 aa36.87■■■■□ 3.49
SMARCC1-203ENST00000454240 PSDA5PKW4 1024 aaPredicted RBP36.86■■■■□ 3.49
SMARCC1-203ENST00000454240 PTCD1O75127 700 aaKnown RBP36.86■■■■□ 3.49
SMARCC1-203ENST00000454240 ATP6V1AP38606 617 aa36.86■■■■□ 3.49
SMARCC1-203ENST00000454240 CCER2I3L3R5 266 aa36.85■■■■□ 3.49
SMARCC1-203ENST00000454240 APAF1O14727 1248 aa36.85■■■■□ 3.49
SMARCC1-203ENST00000454240 LMOD3Q0VAK6 560 aa36.85■■■■□ 3.49
SMARCC1-203ENST00000454240 NEUROD2Q15784 382 aa36.85■■■■□ 3.49
SMARCC1-203ENST00000454240 KCPQ6ZWJ8 1503 aa36.85■■■■□ 3.49
SMARCC1-203ENST00000454240 ITPK1Q13572 414 aa36.84■■■■□ 3.49
SMARCC1-203ENST00000454240 ZNF827Q17R98 1081 aa36.84■■■■□ 3.49
SMARCC1-203ENST00000454240 BTBD11A6QL63 1104 aa36.83■■■■□ 3.49
SMARCC1-203ENST00000454240 TAF7Q15545 349 aaPredicted RBP36.83■■■■□ 3.49
SMARCC1-203ENST00000454240 ZNF790Q6PG37 636 aa36.83■■■■□ 3.49
SMARCC1-203ENST00000454240 THUMPD2Q9BTF0 503 aaKnown RBP36.83■■■■□ 3.49
SMARCC1-203ENST00000454240 TRIM35Q9UPQ4 493 aa36.83■■■■□ 3.49
SMARCC1-203ENST00000454240 CICQ96RK0 1608 aaPredicted RBP36.83■■■■□ 3.49
SMARCC1-203ENST00000454240 C4BP0C0L5 1744 aa36.82■■■■□ 3.49
SMARCC1-203ENST00000454240 COL5A3P25940 1745 aaPredicted RBP36.82■■■■□ 3.48
SMARCC1-203ENST00000454240 QSER1Q2KHR3 1735 aa36.81■■■■□ 3.48
SMARCC1-203ENST00000454240 TUBGCP6Q96RT7 1819 aa36.8■■■■□ 3.48
SMARCC1-203ENST00000454240 TJP1Q07157 1748 aa36.8■■■■□ 3.48
SMARCC1-203ENST00000454240 FAM9BQ8IZU0 186 aa36.8■■■■□ 3.48
SMARCC1-203ENST00000454240 TTC5Q8N0Z6 440 aa36.8■■■■□ 3.48
SMARCC1-203ENST00000454240 LINC00116Q8NCU8 138 aa36.8■■■■□ 3.48
SMARCC1-203ENST00000454240 KCNQ3O43525 872 aa36.76■■■■□ 3.48
SMARCC1-203ENST00000454240 MIER1Q8N108 512 aa36.76■■■■□ 3.48
SMARCC1-203ENST00000454240 KDM3BQ7LBC6 1761 aa36.76■■■■□ 3.47
SMARCC1-203ENST00000454240 VSIG10Q8N0Z9 540 aa36.75■■■■□ 3.47
SMARCC1-203ENST00000454240 ZNF496Q96IT1 587 aaPredicted RBP36.75■■■■□ 3.47
SMARCC1-203ENST00000454240 CASZ1Q86V15 1759 aa36.74■■■■□ 3.47
SMARCC1-203ENST00000454240 UBR3Q6ZT12 1888 aa36.73■■■■□ 3.47
SMARCC1-203ENST00000454240 TFCP2L1Q9NZI6 479 aa36.73■■■■□ 3.47
SMARCC1-203ENST00000454240 MYH14Q7Z406 1995 aaKnown RBP36.72■■■■□ 3.47
SMARCC1-203ENST00000454240 MIS18AQ9NYP9 233 aa36.72■■■■□ 3.47
SMARCC1-203ENST00000454240 HEG1Q9ULI3 1381 aa36.71■■■■□ 3.47
SMARCC1-203ENST00000454240 FMNL2Q96PY5 1086 aa36.71■■■■□ 3.47
SMARCC1-203ENST00000454240 DNAJC10Q8IXB1 793 aa36.7■■■■□ 3.47
SMARCC1-203ENST00000454240 RC3H1Q5TC82 1133 aaKnown RBP36.69■■■■□ 3.46
SMARCC1-203ENST00000454240 AK7Q96M32 723 aa36.69■■■■□ 3.46
SMARCC1-203ENST00000454240 PDGFDQ9GZP0 370 aaPredicted RBP36.69■■■■□ 3.46
SMARCC1-203ENST00000454240 PNPLA7Q6ZV29 1317 aa36.68■■■■□ 3.46
SMARCC1-203ENST00000454240 CNTNAP4Q9C0A0 1308 aa36.68■■■■□ 3.46
SMARCC1-203ENST00000454240 NCBP3Q53F19 620 aaKnown RBP36.68■■■■□ 3.46
SMARCC1-203ENST00000454240 BABAM1Q9NWV8 329 aa36.68■■■■□ 3.46
SMARCC1-203ENST00000454240 CCDC27Q2M243 656 aa36.65■■■■□ 3.46
SMARCC1-203ENST00000454240 CYP19A1P11511 503 aaPredicted RBP36.64■■■■□ 3.46
SMARCC1-203ENST00000454240 SENP3-EIF4A1A0A087X0R7 540 aa36.63■■■■□ 3.45
SMARCC1-203ENST00000454240 CRKLP46109 303 aaKnown RBP36.63■■■■□ 3.45
SMARCC1-203ENST00000454240 AMIGO3Q86WK7 504 aa36.63■■■■□ 3.45
SMARCC1-203ENST00000454240 TEX13AQ9BXU3 409 aaPredicted RBP36.63■■■■□ 3.45
SMARCC1-203ENST00000454240 TSPYL4Q9UJ04 414 aa36.63■■■■□ 3.45
SMARCC1-203ENST00000454240 GNPATO15228 680 aa36.62■■■■□ 3.45
SMARCC1-203ENST00000454240 CHL1O00533 1208 aa36.61■■■■□ 3.45
SMARCC1-203ENST00000454240 FLAD1Q8NFF5 587 aa36.61■■■■□ 3.45
SMARCC1-203ENST00000454240 SSFA2P28290 1259 aa36.6■■■■□ 3.45
SMARCC1-203ENST00000454240 EIF4A1P60842 406 aaKnown RBP36.6■■■■□ 3.45
SMARCC1-203ENST00000454240 INTS5Q6P9B9 1019 aaKnown RBP36.6■■■■□ 3.45
SMARCC1-203ENST00000454240 COL23A1Q86Y22 540 aaPredicted RBP36.6■■■■□ 3.45
SMARCC1-203ENST00000454240 RPS6KA4O75676 772 aa36.58■■■■□ 3.45
SMARCC1-203ENST00000454240 SNRPA1P09661 255 aaKnown RBP36.58■■■■□ 3.45
SMARCC1-203ENST00000454240 CALD1Q05682 793 aaKnown RBP36.58■■■■□ 3.45
SMARCC1-203ENST00000454240 WWC1Q8IX03 1113 aa36.58■■■■□ 3.45
SMARCC1-203ENST00000454240 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP36.57■■■■□ 3.44
SMARCC1-203ENST00000454240 STARD3NLO95772 234 aa36.57■■■■□ 3.44
SMARCC1-203ENST00000454240 SMIM5Q71RC9 77 aa36.57■■■■□ 3.44
SMARCC1-203ENST00000454240 CFAP44Q96MT7 982 aa36.57■■■■□ 3.44
SMARCC1-203ENST00000454240 CCDC87Q9NVE4 849 aa36.57■■■■□ 3.44
Retrieved 100 of 20,778 RNA–protein pairs in 52.7 ms