RNA–Protein interactions for RNA: ENST00000452128.6

SCAMP4-205, Transcript of secretory carrier membrane protein 4, humanhuman

TSL 2

Gene SCAMP4, Length 718 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAMP4-205ENST00000452128 U2AF1Q01081 240 aaKnown RBP eCLIP21.6■■□□□ 1.05
SCAMP4-205ENST00000452128 IL17REQ8NFR9 667 aa21.6■■□□□ 1.05
SCAMP4-205ENST00000452128 SLC52A2Q9HAB3 445 aa21.6■■□□□ 1.05
SCAMP4-205ENST00000452128 AMIGO3Q86WK7 504 aa21.59■■□□□ 1.05
SCAMP4-205ENST00000452128 ZBTB7AO95365 584 aa21.58■■□□□ 1.05
SCAMP4-205ENST00000452128 LINC00116Q8NCU8 138 aa21.58■■□□□ 1.05
SCAMP4-205ENST00000452128 MRC1P22897 1456 aa21.58■■□□□ 1.04
SCAMP4-205ENST00000452128 GAS2L2Q8NHY3 880 aa21.57■■□□□ 1.04
SCAMP4-205ENST00000452128 PLEKHF1Q96S99 279 aa21.57■■□□□ 1.04
SCAMP4-205ENST00000452128 MTFR1LQ9H019 292 aa21.57■■□□□ 1.04
SCAMP4-205ENST00000452128 TFCP2L1Q9NZI6 479 aa21.57■■□□□ 1.04
SCAMP4-205ENST00000452128 HMGB2P26583 209 aaKnown RBP21.56■■□□□ 1.04
SCAMP4-205ENST00000452128 COL23A1Q86Y22 540 aaPredicted RBP21.56■■□□□ 1.04
SCAMP4-205ENST00000452128 SLC16A10Q8TF71 515 aa21.56■■□□□ 1.04
SCAMP4-205ENST00000452128 SCN11AQ9UI33 1791 aa21.56■■□□□ 1.04
SCAMP4-205ENST00000452128 PRKRIP1Q9H875 184 aaPredicted RBP21.55■■□□□ 1.04
SCAMP4-205ENST00000452128 ATF5Q9Y2D1 282 aaPredicted RBP21.55■■□□□ 1.04
SCAMP4-205ENST00000452128 CEMIPQ8WUJ3 1361 aa21.55■■□□□ 1.04
SCAMP4-205ENST00000452128 MYBBP1AQ9BQG0 1328 aaKnown RBP21.55■■□□□ 1.04
SCAMP4-205ENST00000452128 MAP3K5Q99683 1374 aa21.54■■□□□ 1.04
SCAMP4-205ENST00000452128 GNAT3A8MTJ3 354 aa21.54■■□□□ 1.04
SCAMP4-205ENST00000452128 ATP6V1AP38606 617 aa21.54■■□□□ 1.04
SCAMP4-205ENST00000452128 QSER1Q2KHR3 1735 aa21.54■■□□□ 1.04
SCAMP4-205ENST00000452128 TAF1LQ8IZX4 1826 aa21.53■■□□□ 1.04
SCAMP4-205ENST00000452128 ZNF316A6NFI3 1004 aaPredicted RBP21.53■■□□□ 1.04
SCAMP4-205ENST00000452128 ZNF831Q5JPB2 1677 aa21.53■■□□□ 1.04
SCAMP4-205ENST00000452128 RC3H1Q5TC82 1133 aaKnown RBP21.52■■□□□ 1.04
SCAMP4-205ENST00000452128 C5P01031 1676 aa21.51■■□□□ 1.03
SCAMP4-205ENST00000452128 TUBGCP6Q96RT7 1819 aa21.51■■□□□ 1.03
SCAMP4-205ENST00000452128 SMIM5Q71RC9 77 aa21.51■■□□□ 1.03
SCAMP4-205ENST00000452128 C4BP0C0L5 1744 aa21.5■■□□□ 1.03
SCAMP4-205ENST00000452128 SLC39A6Q13433 755 aa21.5■■□□□ 1.03
SCAMP4-205ENST00000452128 PTCD1O75127 700 aaKnown RBP21.49■■□□□ 1.03
SCAMP4-205ENST00000452128 RBM42Q9BTD8 480 aaKnown RBP21.49■■□□□ 1.03
SCAMP4-205ENST00000452128 COL24A1Q17RW2 1714 aa21.49■■□□□ 1.03
SCAMP4-205ENST00000452128 HTATSF1O43719 755 aaKnown RBP21.48■■□□□ 1.03
SCAMP4-205ENST00000452128 FLAD1Q8NFF5 587 aa21.48■■□□□ 1.03
SCAMP4-205ENST00000452128 SSFA2P28290 1259 aa21.47■■□□□ 1.03
SCAMP4-205ENST00000452128 CNTNAP4Q9C0A0 1308 aa21.47■■□□□ 1.03
SCAMP4-205ENST00000452128 KCPQ6ZWJ8 1503 aa21.46■■□□□ 1.03
SCAMP4-205ENST00000452128 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP21.46■■□□□ 1.03
SCAMP4-205ENST00000452128 AK7Q96M32 723 aa21.46■■□□□ 1.03
SCAMP4-205ENST00000452128 INTS5Q6P9B9 1019 aaKnown RBP21.45■■□□□ 1.02
SCAMP4-205ENST00000452128 UBR3Q6ZT12 1888 aa21.44■■□□□ 1.02
SCAMP4-205ENST00000452128 RPS6KA4O75676 772 aa21.44■■□□□ 1.02
SCAMP4-205ENST00000452128 VSIG10Q8N0Z9 540 aa21.44■■□□□ 1.02
SCAMP4-205ENST00000452128 CICQ96RK0 1608 aaPredicted RBP21.44■■□□□ 1.02
SCAMP4-205ENST00000452128 GNPATO15228 680 aa21.43■■□□□ 1.02
SCAMP4-205ENST00000452128 ZNF790Q6PG37 636 aa21.43■■□□□ 1.02
SCAMP4-205ENST00000452128 MCM10Q7L590 875 aa21.43■■□□□ 1.02
SCAMP4-205ENST00000452128 DNAJC10Q8IXB1 793 aa21.43■■□□□ 1.02
SCAMP4-205ENST00000452128 KCNQ3O43525 872 aa21.42■■□□□ 1.02
SCAMP4-205ENST00000452128 CYP19A1P11511 503 aaPredicted RBP21.42■■□□□ 1.02
SCAMP4-205ENST00000452128 CRKLP46109 303 aaKnown RBP21.42■■□□□ 1.02
SCAMP4-205ENST00000452128 TEFQ10587 303 aa21.42■■□□□ 1.02
SCAMP4-205ENST00000452128 DCTN1Q14203 1278 aa21.42■■□□□ 1.02
SCAMP4-205ENST00000452128 NFE2L2Q16236 605 aa21.42■■□□□ 1.02
SCAMP4-205ENST00000452128 MYH14Q7Z406 1995 aaKnown RBP21.42■■□□□ 1.02
SCAMP4-205ENST00000452128 ZNF496Q96IT1 587 aaPredicted RBP21.42■■□□□ 1.02
SCAMP4-205ENST00000452128 ARXQ96QS3 562 aa21.42■■□□□ 1.02
SCAMP4-205ENST00000452128 SIPA1L3O60292 1781 aaPredicted RBP21.41■■□□□ 1.02
SCAMP4-205ENST00000452128 COL5A3P25940 1745 aaPredicted RBP21.41■■□□□ 1.02
SCAMP4-205ENST00000452128 ARHGEF1Q92888 912 aaKnown RBP21.4■■□□□ 1.02
SCAMP4-205ENST00000452128 VIRMAQ69YN4 1812 aaKnown RBP21.39■■□□□ 1.02
SCAMP4-205ENST00000452128 TJP1Q07157 1748 aa21.39■■□□□ 1.01
SCAMP4-205ENST00000452128 PHF14O94880 888 aa21.39■■□□□ 1.01
SCAMP4-205ENST00000452128 ADRA2BP18089 450 aa21.39■■□□□ 1.01
SCAMP4-205ENST00000452128 SYT17Q9BSW7 474 aa21.39■■□□□ 1.01
SCAMP4-205ENST00000452128 FHDC1Q9C0D6 1143 aaPredicted RBP21.39■■□□□ 1.01
SCAMP4-205ENST00000452128 PNNQ9H307 717 aaKnown RBP21.39■■□□□ 1.01
SCAMP4-205ENST00000452128 PPP1R1BQ9UD71 204 aaPredicted RBP21.39■■□□□ 1.01
SCAMP4-205ENST00000452128 ADAMTS8Q9UP79 889 aa21.39■■□□□ 1.01
SCAMP4-205ENST00000452128 RTCBQ9Y3I0 505 aaKnown RBP21.39■■□□□ 1.01
SCAMP4-205ENST00000452128 UBR2Q8IWV8 1755 aa21.38■■□□□ 1.01
SCAMP4-205ENST00000452128 MSH5O43196 834 aa21.37■■□□□ 1.01
SCAMP4-205ENST00000452128 CCDC184Q52MB2 194 aa21.37■■□□□ 1.01
SCAMP4-205ENST00000452128 TRAPPC3LQ5T215 181 aa21.37■■□□□ 1.01
SCAMP4-205ENST00000452128 MSL1Q68DK7 614 aa21.37■■□□□ 1.01
SCAMP4-205ENST00000452128 RTF1Q92541 710 aaKnown RBP21.37■■□□□ 1.01
SCAMP4-205ENST00000452128 HEG1Q9ULI3 1381 aa21.36■■□□□ 1.01
SCAMP4-205ENST00000452128 BTBD11A6QL63 1104 aa21.36■■□□□ 1.01
SCAMP4-205ENST00000452128 TAF7Q15545 349 aaPredicted RBP21.36■■□□□ 1.01
SCAMP4-205ENST00000452128 TMPOP42166 694 aaKnown RBP21.35■■□□□ 1.01
SCAMP4-205ENST00000452128 CCDC87Q9NVE4 849 aa21.35■■□□□ 1.01
SCAMP4-205ENST00000452128 SOS1Q07889 1333 aaPredicted RBP21.34■■□□□ 1.01
SCAMP4-205ENST00000452128 POLD1P28340 1107 aa21.34■■□□□ 1.01
SCAMP4-205ENST00000452128 GYS1P13807 737 aa21.33■■□□□ 1.01
SCAMP4-205ENST00000452128 TTC5Q8N0Z6 440 aa21.33■■□□□ 1.01
SCAMP4-205ENST00000452128 FMNL2Q96PY5 1086 aa21.33■■□□□ 1.01
SCAMP4-205ENST00000452128 THUMPD2Q9BTF0 503 aaKnown RBP21.33■■□□□ 1.01
SCAMP4-205ENST00000452128 RUNDC1Q96C34 613 aa21.32■■□□□ 1
SCAMP4-205ENST00000452128 ZBTB1Q9Y2K1 713 aa21.32■■□□□ 1
SCAMP4-205ENST00000452128 NEFMP07197 916 aa21.31■■□□□ 1
SCAMP4-205ENST00000452128 RIPK4P57078 832 aa21.31■■□□□ 1
SCAMP4-205ENST00000452128 TEX13AQ9BXU3 409 aaPredicted RBP21.31■■□□□ 1
SCAMP4-205ENST00000452128 MIS18AQ9NYP9 233 aa21.31■■□□□ 1
SCAMP4-205ENST00000452128 MAPK8IP3Q9UPT6 1336 aa21.3■■□□□ 1
SCAMP4-205ENST00000452128 EIF5P55010 431 aaKnown RBP21.3■■□□□ 1
SCAMP4-205ENST00000452128 CCDC146Q8IYE0 955 aa21.3■■□□□ 1
SCAMP4-205ENST00000452128 TRIM35Q9UPQ4 493 aa21.3■■□□□ 1
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms