RNA–Protein interactions for RNA: ENST00000449575.6

CCDC171-203, Transcript of coiled-coil domain containing 171, humanhuman

TSL 2

Gene CCDC171, Length 2,628 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC171-203ENST00000449575 NEFMP07197 916 aa12.96□□□□□ -0.33
CCDC171-203ENST00000449575 NFATC2IPQ8NCF5 419 aa12.96□□□□□ -0.33
CCDC171-203ENST00000449575 PIGBQ92521 554 aa12.96□□□□□ -0.33
CCDC171-203ENST00000449575 PNNQ9H307 717 aaKnown RBP12.96□□□□□ -0.33
CCDC171-203ENST00000449575 TRIM35Q9UPQ4 493 aa12.95□□□□□ -0.34
CCDC171-203ENST00000449575 NEFLP07196 543 aa12.95□□□□□ -0.34
CCDC171-203ENST00000449575 BCL11BQ9C0K0 894 aaPredicted RBP12.95□□□□□ -0.34
CCDC171-203ENST00000449575 CEMIPQ8WUJ3 1361 aa12.94□□□□□ -0.34
CCDC171-203ENST00000449575 APBA3O96018 575 aa12.94□□□□□ -0.34
CCDC171-203ENST00000449575 HSP90AB1P08238 724 aaKnown RBP12.94□□□□□ -0.34
CCDC171-203ENST00000449575 MRC1P22897 1456 aa12.94□□□□□ -0.34
CCDC171-203ENST00000449575 EN1Q05925 392 aaPredicted RBP12.93□□□□□ -0.34
CCDC171-203ENST00000449575 ASAP1Q9ULH1 1129 aa12.93□□□□□ -0.34
CCDC171-203ENST00000449575 LY75O60449 1722 aa12.93□□□□□ -0.34
CCDC171-203ENST00000449575 KCNQ4P56696 695 aa12.93□□□□□ -0.34
CCDC171-203ENST00000449575 CABP4P57796 275 aa12.93□□□□□ -0.34
CCDC171-203ENST00000449575 SLC52A2Q9HAB3 445 aa12.93□□□□□ -0.34
CCDC171-203ENST00000449575 TMOD3Q9NYL9 352 aa12.93□□□□□ -0.34
CCDC171-203ENST00000449575 ERVV-2B6SEH9 535 aa12.92□□□□□ -0.34
CCDC171-203ENST00000449575 SLC39A6Q13433 755 aa12.92□□□□□ -0.34
CCDC171-203ENST00000449575 FKBP8Q14318 412 aa12.92□□□□□ -0.34
CCDC171-203ENST00000449575 RTF1Q92541 710 aaKnown RBP12.92□□□□□ -0.34
CCDC171-203ENST00000449575 MIS18AQ9NYP9 233 aa12.92□□□□□ -0.34
CCDC171-203ENST00000449575 PAPPAQ13219 1627 aa12.92□□□□□ -0.34
CCDC171-203ENST00000449575 KCNQ3O43525 872 aa12.91□□□□□ -0.34
CCDC171-203ENST00000449575 EZH2Q15910 746 aaKnown RBP12.91□□□□□ -0.34
CCDC171-203ENST00000449575 PROM2Q8N271 834 aa12.91□□□□□ -0.34
CCDC171-203ENST00000449575 ATG3Q9NT62 314 aa12.91□□□□□ -0.34
CCDC171-203ENST00000449575 UBR2Q8IWV8 1755 aa12.9□□□□□ -0.34
CCDC171-203ENST00000449575 SOCS7O14512 581 aa12.9□□□□□ -0.34
CCDC171-203ENST00000449575 TEFQ10587 303 aa12.9□□□□□ -0.34
CCDC171-203ENST00000449575 KDM3BQ7LBC6 1761 aa12.9□□□□□ -0.34
CCDC171-203ENST00000449575 TAF1LQ8IZX4 1826 aa12.9□□□□□ -0.34
CCDC171-203ENST00000449575 HTATSF1O43719 755 aaKnown RBP12.9□□□□□ -0.35
CCDC171-203ENST00000449575 ARXQ96QS3 562 aa12.9□□□□□ -0.35
CCDC171-203ENST00000449575 FANCIQ9NVI1 1328 aa12.89□□□□□ -0.35
CCDC171-203ENST00000449575 RREB1Q92766 1687 aa12.89□□□□□ -0.35
CCDC171-203ENST00000449575 RGPD3A6NKT7 1758 aaPredicted RBP12.89□□□□□ -0.35
CCDC171-203ENST00000449575 RGPD4Q7Z3J3 1758 aa12.89□□□□□ -0.35
CCDC171-203ENST00000449575 SF3B2Q13435 895 aaKnown RBP12.89□□□□□ -0.35
CCDC171-203ENST00000449575 SLC4A9Q96Q91 983 aa12.89□□□□□ -0.35
CCDC171-203ENST00000449575 CAMKK2Q96RR4 588 aa12.89□□□□□ -0.35
CCDC171-203ENST00000449575 NUP188Q5SRE5 1749 aa12.88□□□□□ -0.35
CCDC171-203ENST00000449575 PALLDQ8WX93 1383 aa12.88□□□□□ -0.35
CCDC171-203ENST00000449575 LRRC4BQ9NT99 713 aa12.88□□□□□ -0.35
CCDC171-203ENST00000449575 PTCD1O75127 700 aaKnown RBP12.88□□□□□ -0.35
CCDC171-203ENST00000449575 CCDC125Q86Z20 511 aa12.88□□□□□ -0.35
CCDC171-203ENST00000449575 WWC1Q8IX03 1113 aa12.88□□□□□ -0.35
CCDC171-203ENST00000449575 KCPQ6ZWJ8 1503 aa12.87□□□□□ -0.35
CCDC171-203ENST00000449575 PLSCR1O15162 318 aa12.87□□□□□ -0.35
CCDC171-203ENST00000449575 SRCAPQ6ZRS2 3230 aa12.87□□□□□ -0.35
CCDC171-203ENST00000449575 BAG6P46379 1132 aa12.87□□□□□ -0.35
CCDC171-203ENST00000449575 TXNRD1Q16881 649 aa12.87□□□□□ -0.35
CCDC171-203ENST00000449575 MYH14Q7Z406 1995 aaKnown RBP12.87□□□□□ -0.35
CCDC171-203ENST00000449575 BTBD11A6QL63 1104 aa12.86□□□□□ -0.35
CCDC171-203ENST00000449575 TAF7Q15545 349 aaPredicted RBP12.86□□□□□ -0.35
CCDC171-203ENST00000449575 LAS1LQ9Y4W2 734 aaKnown RBP12.86□□□□□ -0.35
CCDC171-203ENST00000449575 TJP1Q07157 1748 aa12.86□□□□□ -0.35
CCDC171-203ENST00000449575 C5P01031 1676 aa12.86□□□□□ -0.35
CCDC171-203ENST00000449575 LMOD3Q0VAK6 560 aa12.86□□□□□ -0.35
CCDC171-203ENST00000449575 KLHL34Q8N239 644 aa12.86□□□□□ -0.35
CCDC171-203ENST00000449575 RBM42Q9BTD8 480 aaKnown RBP12.86□□□□□ -0.35
CCDC171-203ENST00000449575 SPINK5Q9NQ38 1064 aaPredicted RBP12.86□□□□□ -0.35
CCDC171-203ENST00000449575 ZNF790Q6PG37 636 aa12.85□□□□□ -0.35
CCDC171-203ENST00000449575 PRAMEF22A3QJZ6 481 aa12.85□□□□□ -0.35
CCDC171-203ENST00000449575 ZNF496Q96IT1 587 aaPredicted RBP12.85□□□□□ -0.35
CCDC171-203ENST00000449575 COL5A3P25940 1745 aaPredicted RBP12.85□□□□□ -0.35
CCDC171-203ENST00000449575 LOC102724428A0A0B4J2F2 783 aa12.84□□□□□ -0.35
CCDC171-203ENST00000449575 SIK1P57059 783 aa12.84□□□□□ -0.35
CCDC171-203ENST00000449575 ITPK1Q13572 414 aa12.84□□□□□ -0.35
CCDC171-203ENST00000449575 CCDC27Q2M243 656 aa12.84□□□□□ -0.35
CCDC171-203ENST00000449575 KRT24Q2M2I5 525 aa12.84□□□□□ -0.35
CCDC171-203ENST00000449575 TUBGCP6Q96RT7 1819 aa12.84□□□□□ -0.35
CCDC171-203ENST00000449575 CCNL1Q9UK58 526 aaPredicted RBP12.84□□□□□ -0.35
CCDC171-203ENST00000449575 ZNF521Q96K83 1311 aa12.83□□□□□ -0.35
CCDC171-203ENST00000449575 HNRNPUQ00839 825 aaKnown RBP eCLIP12.83□□□□□ -0.36
CCDC171-203ENST00000449575 TSR2Q969E8 191 aaKnown RBP12.83□□□□□ -0.36
CCDC171-203ENST00000449575 TSPYL4Q9UJ04 414 aa12.83□□□□□ -0.36
CCDC171-203ENST00000449575 ZNF853P0CG23 659 aa12.82□□□□□ -0.36
CCDC171-203ENST00000449575 ATP6V1AP38606 617 aa12.82□□□□□ -0.36
CCDC171-203ENST00000449575 SMIM5Q71RC9 77 aa12.82□□□□□ -0.36
CCDC171-203ENST00000449575 SMARCC1Q92922 1105 aaPredicted RBP12.82□□□□□ -0.36
CCDC171-203ENST00000449575 ANO8Q9HCE9 1232 aaPredicted RBP12.82□□□□□ -0.36
CCDC171-203ENST00000449575 MBIPQ9NS73 344 aa12.82□□□□□ -0.36
CCDC171-203ENST00000449575 ZNF831Q5JPB2 1677 aa12.82□□□□□ -0.36
CCDC171-203ENST00000449575 CHL1O00533 1208 aa12.82□□□□□ -0.36
CCDC171-203ENST00000449575 TTC5Q8N0Z6 440 aa12.81□□□□□ -0.36
CCDC171-203ENST00000449575 LINC00116Q8NCU8 138 aa12.81□□□□□ -0.36
CCDC171-203ENST00000449575 CDCA7LQ96GN5 454 aa12.81□□□□□ -0.36
CCDC171-203ENST00000449575 CFAP44Q96MT7 982 aa12.81□□□□□ -0.36
CCDC171-203ENST00000449575 C4BP0C0L5 1744 aa12.81□□□□□ -0.36
CCDC171-203ENST00000449575 MSH5O43196 834 aa12.81□□□□□ -0.36
CCDC171-203ENST00000449575 AMIGO3Q86WK7 504 aa12.81□□□□□ -0.36
CCDC171-203ENST00000449575 DNAJC10Q8IXB1 793 aa12.81□□□□□ -0.36
CCDC171-203ENST00000449575 EIF4A1P60842 406 aaKnown RBP12.8□□□□□ -0.36
CCDC171-203ENST00000449575 UBR3Q6ZT12 1888 aa12.8□□□□□ -0.36
CCDC171-203ENST00000449575 CICQ96RK0 1608 aaPredicted RBP12.8□□□□□ -0.36
CCDC171-203ENST00000449575 HEG1Q9ULI3 1381 aa12.8□□□□□ -0.36
CCDC171-203ENST00000449575 ZNF827Q17R98 1081 aa12.8□□□□□ -0.36
CCDC171-203ENST00000449575 IFT57Q9NWB7 429 aa12.79□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms