RNA–Protein interactions for RNA: ENST00000447439.6

KLHL3-202, Transcript of kelch like family member 3, humanhuman

TSL 1 (best)

Gene KLHL3, Length 2,697 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
KLHL3-202ENST00000447439 RGPD1P0DJD0 1748 aa11.61□□□□□ -0.55
KLHL3-202ENST00000447439 NALCNQ8IZF0 1738 aa11.61□□□□□ -0.55
KLHL3-202ENST00000447439 GNAT3A8MTJ3 354 aa11.61□□□□□ -0.55
KLHL3-202ENST00000447439 NCLP19338 710 aaKnown RBP11.61□□□□□ -0.55
KLHL3-202ENST00000447439 HAP1P54257 671 aaPredicted RBP11.61□□□□□ -0.55
KLHL3-202ENST00000447439 RABEP1Q15276 862 aa11.61□□□□□ -0.55
KLHL3-202ENST00000447439 CIZ1Q9ULV3 898 aaPredicted RBP11.61□□□□□ -0.55
KLHL3-202ENST00000447439 TTC21AQ8NDW8 1320 aa11.61□□□□□ -0.55
KLHL3-202ENST00000447439 TRIM6-TRIM34B2RNG4 842 aa11.61□□□□□ -0.55
KLHL3-202ENST00000447439 BAG4O95429 457 aaKnown RBP11.61□□□□□ -0.55
KLHL3-202ENST00000447439 CCT4P50991 539 aaKnown RBP11.61□□□□□ -0.55
KLHL3-202ENST00000447439 UNC5CLQ8IV45 518 aa11.61□□□□□ -0.55
KLHL3-202ENST00000447439 HMMRO75330 724 aa11.6□□□□□ -0.55
KLHL3-202ENST00000447439 XPCQ01831 940 aaPredicted RBP11.6□□□□□ -0.55
KLHL3-202ENST00000447439 KCNQ3O43525 872 aa11.6□□□□□ -0.55
KLHL3-202ENST00000447439 CASC1Q6TDU7 716 aa11.6□□□□□ -0.55
KLHL3-202ENST00000447439 NUTM1Q86Y26 1132 aa11.6□□□□□ -0.55
KLHL3-202ENST00000447439 PALD1Q9ULE6 856 aa11.6□□□□□ -0.55
KLHL3-202ENST00000447439 AK9Q5TCS8 1911 aa11.6□□□□□ -0.55
KLHL3-202ENST00000447439 DIP2AQ14689 1571 aa11.59□□□□□ -0.55
KLHL3-202ENST00000447439 KDRP35968 1356 aa11.59□□□□□ -0.55
KLHL3-202ENST00000447439 LGR6Q9HBX8 967 aa11.59□□□□□ -0.55
KLHL3-202ENST00000447439 ERC2O15083 957 aa11.59□□□□□ -0.55
KLHL3-202ENST00000447439 MRE11P49959 708 aa11.59□□□□□ -0.55
KLHL3-202ENST00000447439 CCDC30Q5VVM6 783 aa11.59□□□□□ -0.55
KLHL3-202ENST00000447439 IL25Q9H293 177 aa11.59□□□□□ -0.55
KLHL3-202ENST00000447439 TBX22Q9Y458 520 aa11.59□□□□□ -0.55
KLHL3-202ENST00000447439 DDX49Q9Y6V7 483 aaKnown RBP11.59□□□□□ -0.55
KLHL3-202ENST00000447439 DTNBO60941 627 aa11.58□□□□□ -0.56
KLHL3-202ENST00000447439 FOXD4L6Q3SYB3 417 aaPredicted RBP11.58□□□□□ -0.56
KLHL3-202ENST00000447439 FOXD4L3Q6VB84 417 aaPredicted RBP11.58□□□□□ -0.56
KLHL3-202ENST00000447439 LRRC59Q96AG4 307 aaKnown RBP11.58□□□□□ -0.56
KLHL3-202ENST00000447439 LRRCC1Q9C099 1032 aa11.58□□□□□ -0.56
KLHL3-202ENST00000447439 PIK3C2AO00443 1686 aa11.58□□□□□ -0.56
KLHL3-202ENST00000447439 NEK4P51957 841 aa11.58□□□□□ -0.56
KLHL3-202ENST00000447439 HDGFL1Q5TGJ6 251 aa11.58□□□□□ -0.56
KLHL3-202ENST00000447439 MX1P20591 662 aa11.57□□□□□ -0.56
KLHL3-202ENST00000447439 USP44Q9H0E7 712 aa11.57□□□□□ -0.56
KLHL3-202ENST00000447439 ANO2Q9NQ90 1003 aa11.57□□□□□ -0.56
KLHL3-202ENST00000447439 FMN2Q9NZ56 1722 aa11.57□□□□□ -0.56
KLHL3-202ENST00000447439 RBM27Q9P2N5 1060 aaKnown RBP11.57□□□□□ -0.56
KLHL3-202ENST00000447439 REC8O95072 547 aa11.56□□□□□ -0.56
KLHL3-202ENST00000447439 TAF7Q15545 349 aaPredicted RBP11.56□□□□□ -0.56
KLHL3-202ENST00000447439 NBPF6Q5VWK0 638 aa11.56□□□□□ -0.56
KLHL3-202ENST00000447439 CAVIN1Q6NZI2 390 aaKnown RBP11.56□□□□□ -0.56
KLHL3-202ENST00000447439 NBPF4Q96M43 638 aa11.56□□□□□ -0.56
KLHL3-202ENST00000447439 UPF3BQ9BZI7 483 aaKnown RBP11.56□□□□□ -0.56
KLHL3-202ENST00000447439 ZDHHC9Q9Y397 364 aa11.56□□□□□ -0.56
KLHL3-202ENST00000447439 ERBB4Q15303 1308 aa11.56□□□□□ -0.56
KLHL3-202ENST00000447439 MAP3K5Q99683 1374 aa11.56□□□□□ -0.56
KLHL3-202ENST00000447439 ST18O60284 1047 aa11.56□□□□□ -0.56
KLHL3-202ENST00000447439 ATP8B2P98198 1209 aa11.56□□□□□ -0.56
KLHL3-202ENST00000447439 TPRNQ4KMQ1 711 aa11.56□□□□□ -0.56
KLHL3-202ENST00000447439 LARP6Q9BRS8 491 aaKnown RBP11.56□□□□□ -0.56
KLHL3-202ENST00000447439 PRPF40AO75400 957 aaKnown RBP11.55□□□□□ -0.56
KLHL3-202ENST00000447439 NBPF7P0C2Y1 421 aaPredicted RBP11.55□□□□□ -0.56
KLHL3-202ENST00000447439 UBTFL1P0CB47 393 aaPredicted RBP11.55□□□□□ -0.56
KLHL3-202ENST00000447439 LMOD2Q6P5Q4 547 aa11.55□□□□□ -0.56
KLHL3-202ENST00000447439 THEMISQ8N1K5 641 aaPredicted RBP11.55□□□□□ -0.56
KLHL3-202ENST00000447439 ESYT1Q9BSJ8 1104 aa11.55□□□□□ -0.56
KLHL3-202ENST00000447439 CHPF2Q9P2E5 772 aa11.55□□□□□ -0.56
KLHL3-202ENST00000447439 MPRIPQ6WCQ1 1025 aa11.55□□□□□ -0.56
KLHL3-202ENST00000447439 SALL3Q9BXA9 1300 aa11.55□□□□□ -0.56
KLHL3-202ENST00000447439 SURF6O75683 361 aaKnown RBP11.54□□□□□ -0.56
KLHL3-202ENST00000447439 GNAI3P08754 354 aa11.54□□□□□ -0.56
KLHL3-202ENST00000447439 PPP1R42Q7Z4L9 355 aa11.54□□□□□ -0.56
KLHL3-202ENST00000447439 PRAMEF22A3QJZ6 481 aa11.54□□□□□ -0.56
KLHL3-202ENST00000447439 GOLGA6L22H0YM25 854 aa11.54□□□□□ -0.56
KLHL3-202ENST00000447439 CHMLP26374 656 aa11.54□□□□□ -0.56
KLHL3-202ENST00000447439 ESCO1Q5FWF5 840 aa11.54□□□□□ -0.56
KLHL3-202ENST00000447439 NSFL1CQ9UNZ2 370 aaKnown RBP11.54□□□□□ -0.56
KLHL3-202ENST00000447439 NWD1Q149M9 1564 aa11.54□□□□□ -0.56
KLHL3-202ENST00000447439 IBTKQ9P2D0 1353 aaPredicted RBP11.54□□□□□ -0.56
KLHL3-202ENST00000447439 TMX3Q96JJ7 454 aa11.53□□□□□ -0.56
KLHL3-202ENST00000447439 OSBPL3Q9H4L5 887 aa11.53□□□□□ -0.56
KLHL3-202ENST00000447439 PHF8Q9UPP1 1060 aa11.53□□□□□ -0.56
KLHL3-202ENST00000447439 CYP2E1P05181 493 aaPredicted RBP11.53□□□□□ -0.56
KLHL3-202ENST00000447439 SKOR2Q2VWA4 1001 aaPredicted RBP11.53□□□□□ -0.56
KLHL3-202ENST00000447439 LMBRD1Q9NUN5 540 aa11.53□□□□□ -0.56
KLHL3-202ENST00000447439 SOS1Q07889 1333 aaPredicted RBP11.53□□□□□ -0.56
KLHL3-202ENST00000447439 PI4KAP2A4QPH2 592 aa11.53□□□□□ -0.56
KLHL3-202ENST00000447439 SRGAP3O43295 1099 aa11.53□□□□□ -0.56
KLHL3-202ENST00000447439 PI4KAP1Q8N8J0 262 aa11.53□□□□□ -0.56
KLHL3-202ENST00000447439 GPT2Q8TD30 523 aa11.52□□□□□ -0.57
KLHL3-202ENST00000447439 ARHGAP23Q9P227 1491 aa11.52□□□□□ -0.57
KLHL3-202ENST00000447439 NUCB2P80303 420 aa11.52□□□□□ -0.57
KLHL3-202ENST00000447439 PSME1Q06323 249 aa11.52□□□□□ -0.57
KLHL3-202ENST00000447439 KLHL40Q2TBA0 621 aa11.52□□□□□ -0.57
KLHL3-202ENST00000447439 SETD1BQ9UPS6 1966 aaKnown RBP11.51□□□□□ -0.57
KLHL3-202ENST00000447439 HTATSF1O43719 755 aaKnown RBP11.51□□□□□ -0.57
KLHL3-202ENST00000447439 PROSER3Q2NL68 480 aa11.51□□□□□ -0.57
KLHL3-202ENST00000447439 SRCIN1Q9C0H9 1055 aa11.51□□□□□ -0.57
KLHL3-202ENST00000447439 EIF4A1P60842 406 aaKnown RBP11.51□□□□□ -0.57
KLHL3-202ENST00000447439 ZSCAN23Q3MJ62 389 aa11.51□□□□□ -0.57
KLHL3-202ENST00000447439 ZNF530Q6P9A1 599 aaPredicted RBP11.51□□□□□ -0.57
KLHL3-202ENST00000447439 GDPD2Q9HCC8 539 aa11.51□□□□□ -0.57
KLHL3-202ENST00000447439 SLIT1O75093 1534 aa11.5□□□□□ -0.57
KLHL3-202ENST00000447439 CPA1P15085 419 aa11.5□□□□□ -0.57
KLHL3-202ENST00000447439 NASPP49321 788 aaPredicted RBP11.5□□□□□ -0.57
KLHL3-202ENST00000447439 NAP1L5Q96NT1 182 aaPredicted RBP11.5□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 11.7 ms