RNA–Protein interactions for RNA: ENST00000441438.2

SYNE2-206, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best)

Gene SYNE2, Length 3,084 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-206ENST00000441438 FAM163BP0C2L3 166 aa12.94□□□□□ -0.34
SYNE2-206ENST00000441438 GOPCQ9HD26 462 aa12.94□□□□□ -0.34
SYNE2-206ENST00000441438 C9orf84Q5VXU9 1444 aa12.94□□□□□ -0.34
SYNE2-206ENST00000441438 CD53P19397 219 aa12.94□□□□□ -0.34
SYNE2-206ENST00000441438 IBSPP21815 317 aaPredicted RBP12.94□□□□□ -0.34
SYNE2-206ENST00000441438 EP400NLQ6ZTU2 488 aa12.94□□□□□ -0.34
SYNE2-206ENST00000441438 ATP7AQ04656 1500 aa12.93□□□□□ -0.34
SYNE2-206ENST00000441438 RRBP1Q9P2E9 1410 aaKnown RBP12.93□□□□□ -0.34
SYNE2-206ENST00000441438 HSCBQ8IWL3 235 aa12.93□□□□□ -0.34
SYNE2-206ENST00000441438 DHX38Q92620 1227 aaKnown RBP12.93□□□□□ -0.34
SYNE2-206ENST00000441438 RBM28Q9NW13 759 aaKnown RBP12.93□□□□□ -0.34
SYNE2-206ENST00000441438 TBC1D10BQ4KMP7 808 aaPredicted RBP12.93□□□□□ -0.34
SYNE2-206ENST00000441438 RANBP17Q9H2T7 1088 aaKnown RBP12.93□□□□□ -0.34
SYNE2-206ENST00000441438 ZBTB47Q9UFB7 747 aaPredicted RBP12.93□□□□□ -0.34
SYNE2-206ENST00000441438 CCDC141Q6ZP82 1450 aa12.93□□□□□ -0.34
SYNE2-206ENST00000441438 PRDM15P57071 1507 aaPredicted RBP12.93□□□□□ -0.34
SYNE2-206ENST00000441438 RFX1P22670 979 aa12.92□□□□□ -0.34
SYNE2-206ENST00000441438 TTC39BQ5VTQ0 682 aaPredicted RBP12.92□□□□□ -0.34
SYNE2-206ENST00000441438 ROCK1Q13464 1354 aa12.92□□□□□ -0.34
SYNE2-206ENST00000441438 COQ9O75208 318 aa12.92□□□□□ -0.34
SYNE2-206ENST00000441438 DHX8Q14562 1220 aaKnown RBP12.92□□□□□ -0.34
SYNE2-206ENST00000441438 EFCAB2Q5VUJ9 269 aa12.92□□□□□ -0.34
SYNE2-206ENST00000441438 CC2D1AQ6P1N0 951 aaPredicted RBP12.92□□□□□ -0.34
SYNE2-206ENST00000441438 ZSCAN30Q86W11 494 aa12.92□□□□□ -0.34
SYNE2-206ENST00000441438 EPAS1Q99814 870 aa12.92□□□□□ -0.34
SYNE2-206ENST00000441438 STK25O00506 426 aa12.92□□□□□ -0.34
SYNE2-206ENST00000441438 PEX19P40855 299 aa12.92□□□□□ -0.34
SYNE2-206ENST00000441438 CWC25Q9NXE8 425 aaPredicted RBP12.92□□□□□ -0.34
SYNE2-206ENST00000441438 TTC30AQ86WT1 665 aa12.91□□□□□ -0.34
SYNE2-206ENST00000441438 NGDNQ8NEJ9 315 aaKnown RBP12.91□□□□□ -0.34
SYNE2-206ENST00000441438 IFT122Q9HBG6 1241 aa12.91□□□□□ -0.34
SYNE2-206ENST00000441438 COL4A3BPQ9Y5P4 624 aa12.91□□□□□ -0.34
SYNE2-206ENST00000441438 CNTLNQ9NXG0 1405 aa12.91□□□□□ -0.34
SYNE2-206ENST00000441438 ADGRL1O94910 1474 aa12.91□□□□□ -0.34
SYNE2-206ENST00000441438 KDM4FA0A1W2PPD8 638 aa12.91□□□□□ -0.34
SYNE2-206ENST00000441438 LDHCP07864 332 aa12.91□□□□□ -0.34
SYNE2-206ENST00000441438 PSMC1P62191 440 aaKnown RBP12.91□□□□□ -0.34
SYNE2-206ENST00000441438 SIN3AQ96ST3 1273 aa12.91□□□□□ -0.34
SYNE2-206ENST00000441438 PAIP2Q9BPZ3 127 aaKnown RBP12.91□□□□□ -0.34
SYNE2-206ENST00000441438 ATP10AO60312 1499 aa12.91□□□□□ -0.34
SYNE2-206ENST00000441438 DUOX2Q9NRD8 1548 aa12.91□□□□□ -0.34
SYNE2-206ENST00000441438 NAT2P11245 290 aa12.9□□□□□ -0.34
SYNE2-206ENST00000441438 MAP9Q49MG5 647 aa12.9□□□□□ -0.34
SYNE2-206ENST00000441438 NYAP1Q6ZVC0 841 aa12.9□□□□□ -0.34
SYNE2-206ENST00000441438 SKAP1Q86WV1 359 aa12.9□□□□□ -0.34
SYNE2-206ENST00000441438 CALR3Q96L12 384 aaKnown RBP12.9□□□□□ -0.34
SYNE2-206ENST00000441438 ERBINQ96RT1 1412 aa12.9□□□□□ -0.34
SYNE2-206ENST00000441438 ARHGAP5Q13017 1502 aa12.9□□□□□ -0.34
SYNE2-206ENST00000441438 ZC3H12AQ5D1E8 599 aaKnown RBP12.9□□□□□ -0.34
SYNE2-206ENST00000441438 CCNB3Q8WWL7 1395 aa12.9□□□□□ -0.34
SYNE2-206ENST00000441438 ATG7O95352 703 aa12.9□□□□□ -0.35
SYNE2-206ENST00000441438 LONRF1Q17RB8 773 aa12.9□□□□□ -0.35
SYNE2-206ENST00000441438 LARP1BQ659C4 914 aaKnown RBP12.9□□□□□ -0.35
SYNE2-206ENST00000441438 VRTNQ9H8Y1 702 aa12.9□□□□□ -0.35
SYNE2-206ENST00000441438 PSMD2Q13200 908 aa12.89□□□□□ -0.35
SYNE2-206ENST00000441438 KCNH8Q96L42 1107 aa12.89□□□□□ -0.35
SYNE2-206ENST00000441438 PES1O00541 588 aaKnown RBP12.89□□□□□ -0.35
SYNE2-206ENST00000441438 TIMM44O43615 452 aa12.89□□□□□ -0.35
SYNE2-206ENST00000441438 TAGLNQ01995 201 aaKnown RBP12.89□□□□□ -0.35
SYNE2-206ENST00000441438 MKRN4PQ13434 485 aaPredicted RBP12.89□□□□□ -0.35
SYNE2-206ENST00000441438 LMNB1P20700 586 aa12.88□□□□□ -0.35
SYNE2-206ENST00000441438 KCTD2Q14681 263 aa12.88□□□□□ -0.35
SYNE2-206ENST00000441438 CDC37Q16543 378 aaPredicted RBP12.88□□□□□ -0.35
SYNE2-206ENST00000441438 DRC7Q8IY82 874 aa12.88□□□□□ -0.35
SYNE2-206ENST00000441438 FAM210AQ96ND0 272 aa12.88□□□□□ -0.35
SYNE2-206ENST00000441438 TANGO6Q9C0B7 1094 aa12.88□□□□□ -0.35
SYNE2-206ENST00000441438 TNNT2P45379 298 aaPredicted RBP12.88□□□□□ -0.35
SYNE2-206ENST00000441438 BMS1Q14692 1282 aaKnown RBP12.88□□□□□ -0.35
SYNE2-206ENST00000441438 GPIHBP1Q8IV16 184 aa12.88□□□□□ -0.35
SYNE2-206ENST00000441438 OGFOD1Q8N543 542 aa12.88□□□□□ -0.35
SYNE2-206ENST00000441438 TCEAL9Q9UHQ7 104 aa12.88□□□□□ -0.35
SYNE2-206ENST00000441438 GNEQ9Y223 722 aaKnown RBP12.88□□□□□ -0.35
SYNE2-206ENST00000441438 CD151P48509 253 aa12.87□□□□□ -0.35
SYNE2-206ENST00000441438 LSM14AQ8ND56 463 aaKnown RBP12.87□□□□□ -0.35
SYNE2-206ENST00000441438 PHF8Q9UPP1 1060 aa12.87□□□□□ -0.35
SYNE2-206ENST00000441438 CCT2P78371 535 aaKnown RBP12.87□□□□□ -0.35
SYNE2-206ENST00000441438 DUSP27Q5VZP5 1158 aa12.87□□□□□ -0.35
SYNE2-206ENST00000441438 CHMP4CQ96CF2 233 aa12.87□□□□□ -0.35
SYNE2-206ENST00000441438 CCDC94Q9BW85 323 aaPredicted RBP12.87□□□□□ -0.35
SYNE2-206ENST00000441438 TRIM34Q9BYJ4 488 aa12.87□□□□□ -0.35
SYNE2-206ENST00000441438 PCDH12Q9NPG4 1184 aa12.87□□□□□ -0.35
SYNE2-206ENST00000441438 FER1L4A9Z1Z3 1794 aa12.87□□□□□ -0.35
SYNE2-206ENST00000441438 USP5P45974 858 aa12.87□□□□□ -0.35
SYNE2-206ENST00000441438 SRPK2P78362 688 aaKnown RBP12.87□□□□□ -0.35
SYNE2-206ENST00000441438 ERCC5P28715 1186 aaPredicted RBP12.86□□□□□ -0.35
SYNE2-206ENST00000441438 PARP9Q8IXQ6 854 aa12.86□□□□□ -0.35
SYNE2-206ENST00000441438 C9orf131Q5VYM1 1079 aa12.86□□□□□ -0.35
SYNE2-206ENST00000441438 NPATQ14207 1427 aa12.85□□□□□ -0.35
SYNE2-206ENST00000441438 MROH1Q8NDA8 1641 aa12.85□□□□□ -0.35
SYNE2-206ENST00000441438 PRC1O43663 620 aa12.85□□□□□ -0.35
SYNE2-206ENST00000441438 HIP1RO75146 1068 aa12.85□□□□□ -0.35
SYNE2-206ENST00000441438 CUEDC1Q9NWM3 386 aaPredicted RBP12.85□□□□□ -0.35
SYNE2-206ENST00000441438 TBC1D2BQ9UPU7 963 aa12.85□□□□□ -0.35
SYNE2-206ENST00000441438 NAP1L1P55209 391 aaKnown RBP12.85□□□□□ -0.35
SYNE2-206ENST00000441438 RETREG1Q9H6L5 497 aa12.85□□□□□ -0.35
SYNE2-206ENST00000441438 IQGAP3Q86VI3 1631 aa12.85□□□□□ -0.35
SYNE2-206ENST00000441438 RAB3GAP2Q9H2M9 1393 aa12.85□□□□□ -0.35
SYNE2-206ENST00000441438 RRM1P23921 792 aa12.85□□□□□ -0.35
SYNE2-206ENST00000441438 CCDC70Q6NSX1 233 aa12.85□□□□□ -0.35
SYNE2-206ENST00000441438 DMGDHQ9UI17 866 aaKnown RBP12.85□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms