RNA–Protein interactions for RNA: ENST00000435823.1

COL28A1-203, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

TSL 1 (best)

Gene COL28A1, Length 678 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-203ENST00000435823 HMGB2P26583 209 aaKnown RBP15.27■□□□□ 0.04
COL28A1-203ENST00000435823 PRKAR2BP31323 418 aa15.27■□□□□ 0.04
COL28A1-203ENST00000435823 CABP4P57796 275 aa15.27■□□□□ 0.04
COL28A1-203ENST00000435823 RSPH6AQ9H0K4 717 aa15.27■□□□□ 0.04
COL28A1-203ENST00000435823 ANO8Q9HCE9 1232 aaPredicted RBP15.27■□□□□ 0.04
COL28A1-203ENST00000435823 NEFMP07197 916 aa15.26■□□□□ 0.03
COL28A1-203ENST00000435823 PRKRIP1Q9H875 184 aaPredicted RBP15.26■□□□□ 0.03
COL28A1-203ENST00000435823 LRRC4BQ9NT99 713 aa15.26■□□□□ 0.03
COL28A1-203ENST00000435823 SLC15A2Q16348 729 aa15.25■□□□□ 0.03
COL28A1-203ENST00000435823 PAPPAQ13219 1627 aa15.25■□□□□ 0.03
COL28A1-203ENST00000435823 SCN11AQ9UI33 1791 aa15.24■□□□□ 0.03
COL28A1-203ENST00000435823 MAP3K5Q99683 1374 aa15.24■□□□□ 0.03
COL28A1-203ENST00000435823 RNMTO43148 476 aaKnown RBP15.23■□□□□ 0.03
COL28A1-203ENST00000435823 KCNQ4P56696 695 aa15.23■□□□□ 0.03
COL28A1-203ENST00000435823 PNNQ9H307 717 aaKnown RBP15.23■□□□□ 0.03
COL28A1-203ENST00000435823 ATG3Q9NT62 314 aa15.23■□□□□ 0.03
COL28A1-203ENST00000435823 ASAP1Q9ULH1 1129 aa15.23■□□□□ 0.03
COL28A1-203ENST00000435823 GNAT3A8MTJ3 354 aa15.22■□□□□ 0.03
COL28A1-203ENST00000435823 NFATC2IPQ8NCF5 419 aa15.22■□□□□ 0.03
COL28A1-203ENST00000435823 PHACTR3Q96KR7 559 aa15.22■□□□□ 0.03
COL28A1-203ENST00000435823 SLC52A2Q9HAB3 445 aa15.22■□□□□ 0.03
COL28A1-203ENST00000435823 LGR6Q9HBX8 967 aa15.22■□□□□ 0.03
COL28A1-203ENST00000435823 LOC102724428A0A0B4J2F2 783 aa15.21■□□□□ 0.03
COL28A1-203ENST00000435823 SIK1P57059 783 aa15.21■□□□□ 0.03
COL28A1-203ENST00000435823 ZNF827Q17R98 1081 aa15.21■□□□□ 0.03
COL28A1-203ENST00000435823 AKT1S1Q96B36 256 aa15.21■□□□□ 0.03
COL28A1-203ENST00000435823 VIRMAQ69YN4 1812 aaKnown RBP15.21■□□□□ 0.03
COL28A1-203ENST00000435823 C5P01031 1676 aa15.2■□□□□ 0.02
COL28A1-203ENST00000435823 ADAMTS7Q9UKP4 1686 aa15.2■□□□□ 0.02
COL28A1-203ENST00000435823 MRC1P22897 1456 aa15.2■□□□□ 0.02
COL28A1-203ENST00000435823 MAPK8IP3Q9UPT6 1336 aa15.19■□□□□ 0.02
COL28A1-203ENST00000435823 LRP5O75197 1615 aa15.19■□□□□ 0.02
COL28A1-203ENST00000435823 ATP6V1AP38606 617 aa15.19■□□□□ 0.02
COL28A1-203ENST00000435823 TEFQ10587 303 aa15.19■□□□□ 0.02
COL28A1-203ENST00000435823 WDR43Q15061 677 aaKnown RBP eCLIP15.19■□□□□ 0.02
COL28A1-203ENST00000435823 RTF1Q92541 710 aaKnown RBP15.19■□□□□ 0.02
COL28A1-203ENST00000435823 TFCP2L1Q9NZI6 479 aa15.19■□□□□ 0.02
COL28A1-203ENST00000435823 TAF1LQ8IZX4 1826 aa15.18■□□□□ 0.02
COL28A1-203ENST00000435823 ANP32CO43423 234 aa15.18■□□□□ 0.02
COL28A1-203ENST00000435823 SLC4A2P04920 1241 aa15.18■□□□□ 0.02
COL28A1-203ENST00000435823 CASZ1Q86V15 1759 aa15.18■□□□□ 0.02
COL28A1-203ENST00000435823 IL17REQ8NFR9 667 aa15.17■□□□□ 0.02
COL28A1-203ENST00000435823 AK7Q96M32 723 aa15.17■□□□□ 0.02
COL28A1-203ENST00000435823 QSER1Q2KHR3 1735 aa15.17■□□□□ 0.02
COL28A1-203ENST00000435823 PLEKHF1Q96S99 279 aa15.16■□□□□ 0.02
COL28A1-203ENST00000435823 SPON1Q9HCB6 807 aa15.16■□□□□ 0.02
COL28A1-203ENST00000435823 C4BP0C0L5 1744 aa15.16■□□□□ 0.02
COL28A1-203ENST00000435823 ZNF831Q5JPB2 1677 aa15.16■□□□□ 0.02
COL28A1-203ENST00000435823 HTATSF1O43719 755 aaKnown RBP15.15■□□□□ 0.02
COL28A1-203ENST00000435823 PTCD1O75127 700 aaKnown RBP15.15■□□□□ 0.02
COL28A1-203ENST00000435823 PNPLA7Q6ZV29 1317 aa15.15■□□□□ 0.02
COL28A1-203ENST00000435823 CEMIPQ8WUJ3 1361 aa15.14■□□□□ 0.01
COL28A1-203ENST00000435823 ZBTB7AO95365 584 aa15.14■□□□□ 0.01
COL28A1-203ENST00000435823 ITPK1Q13572 414 aa15.14■□□□□ 0.01
COL28A1-203ENST00000435823 NFE2L2Q16236 605 aa15.14■□□□□ 0.01
COL28A1-203ENST00000435823 TTC5Q8N0Z6 440 aa15.14■□□□□ 0.01
COL28A1-203ENST00000435823 LINC00116Q8NCU8 138 aa15.14■□□□□ 0.01
COL28A1-203ENST00000435823 FLAD1Q8NFF5 587 aa15.14■□□□□ 0.01
COL28A1-203ENST00000435823 PDGFDQ9GZP0 370 aaPredicted RBP15.14■□□□□ 0.01
COL28A1-203ENST00000435823 TUBGCP6Q96RT7 1819 aa15.14■□□□□ 0.01
COL28A1-203ENST00000435823 SLC39A6Q13433 755 aa15.13■□□□□ 0.01
COL28A1-203ENST00000435823 MCM10Q7L590 875 aa15.13■□□□□ 0.01
COL28A1-203ENST00000435823 SLC16A10Q8TF71 515 aa15.13■□□□□ 0.01
COL28A1-203ENST00000435823 SLC4A9Q96Q91 983 aa15.13■□□□□ 0.01
COL28A1-203ENST00000435823 MTFR1LQ9H019 292 aa15.13■□□□□ 0.01
COL28A1-203ENST00000435823 SIPA1L3O60292 1781 aaPredicted RBP15.11■□□□□ 0.01
COL28A1-203ENST00000435823 GNPATO15228 680 aa15.11■□□□□ 0.01
COL28A1-203ENST00000435823 RUNDC1Q96C34 613 aa15.11■□□□□ 0.01
COL28A1-203ENST00000435823 PPP1R1BQ9UD71 204 aaPredicted RBP15.11■□□□□ 0.01
COL28A1-203ENST00000435823 ADAMTS8Q9UP79 889 aa15.11■□□□□ 0.01
COL28A1-203ENST00000435823 ATF5Q9Y2D1 282 aaPredicted RBP15.11■□□□□ 0.01
COL28A1-203ENST00000435823 DLG5Q8TDM6 1919 aa15.11■□□□□ 0.01
COL28A1-203ENST00000435823 COL5A3P25940 1745 aaPredicted RBP15.1■□□□□ 0.01
COL28A1-203ENST00000435823 BTBD11A6QL63 1104 aa15.1■□□□□ 0.01
COL28A1-203ENST00000435823 PHF14O94880 888 aa15.1■□□□□ 0.01
COL28A1-203ENST00000435823 SSFA2P28290 1259 aa15.1■□□□□ 0.01
COL28A1-203ENST00000435823 DCTN1Q14203 1278 aa15.1■□□□□ 0.01
COL28A1-203ENST00000435823 ZNF790Q6PG37 636 aa15.1■□□□□ 0.01
COL28A1-203ENST00000435823 COL23A1Q86Y22 540 aaPredicted RBP15.1■□□□□ 0.01
COL28A1-203ENST00000435823 CCDC146Q8IYE0 955 aa15.1■□□□□ 0.01
COL28A1-203ENST00000435823 KCPQ6ZWJ8 1503 aa15.1■□□□□ 0.01
COL28A1-203ENST00000435823 CNTNAP4Q9C0A0 1308 aa15.1■□□□□ 0.01
COL28A1-203ENST00000435823 UBR3Q6ZT12 1888 aa15.1■□□□□ 0.01
COL28A1-203ENST00000435823 CICQ96RK0 1608 aaPredicted RBP15.1■□□□□ 0.01
COL28A1-203ENST00000435823 RIPK4P57078 832 aa15.09■□□□□ 0.01
COL28A1-203ENST00000435823 LMOD3Q0VAK6 560 aa15.09■□□□□ 0.01
COL28A1-203ENST00000435823 RC3H1Q5TC82 1133 aaKnown RBP15.09■□□□□ 0.01
COL28A1-203ENST00000435823 VSIG10Q8N0Z9 540 aa15.09■□□□□ 0.01
COL28A1-203ENST00000435823 RTCBQ9Y3I0 505 aaKnown RBP15.09■□□□□ 0.01
COL28A1-203ENST00000435823 TJP1Q07157 1748 aa15.09■□□□□ 0.01
COL28A1-203ENST00000435823 UBR2Q8IWV8 1755 aa15.08■□□□□ 0.01
COL28A1-203ENST00000435823 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP15.08■□□□□ 0
COL28A1-203ENST00000435823 POLD1P28340 1107 aa15.08■□□□□ 0
COL28A1-203ENST00000435823 TMPOP42166 694 aaKnown RBP15.08■□□□□ 0
COL28A1-203ENST00000435823 DNAJC10Q8IXB1 793 aa15.08■□□□□ 0
COL28A1-203ENST00000435823 MRS2Q9HD23 443 aa15.08■□□□□ 0
COL28A1-203ENST00000435823 CRKLP46109 303 aaKnown RBP15.07■□□□□ 0
COL28A1-203ENST00000435823 TAF7Q15545 349 aaPredicted RBP15.07■□□□□ 0
COL28A1-203ENST00000435823 PNISRQ8TF01 805 aaKnown RBP15.07■□□□□ 0
COL28A1-203ENST00000435823 FMNL2Q96PY5 1086 aa15.07■□□□□ 0
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms