RNA–Protein interactions for RNA: ENST00000435425.1

SHH-203, Transcript of sonic hedgehog, humanhuman

TSL 1 (best)

Gene SHH, Length 807 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-203ENST00000435425 TAF1LQ8IZX4 1826 aa24.77■■□□□ 1.56
SHH-203ENST00000435425 C5P01031 1676 aa24.76■■□□□ 1.55
SHH-203ENST00000435425 ZNF827Q17R98 1081 aa24.76■■□□□ 1.55
SHH-203ENST00000435425 ADAMTS7Q9UKP4 1686 aa24.75■■□□□ 1.55
SHH-203ENST00000435425 DLG5Q8TDM6 1919 aa24.75■■□□□ 1.55
SHH-203ENST00000435425 LOC102724428A0A0B4J2F2 783 aa24.75■■□□□ 1.55
SHH-203ENST00000435425 SIK1P57059 783 aa24.75■■□□□ 1.55
SHH-203ENST00000435425 IL17REQ8NFR9 667 aa24.75■■□□□ 1.55
SHH-203ENST00000435425 PLEKHF1Q96S99 279 aa24.75■■□□□ 1.55
SHH-203ENST00000435425 MAPK8IP3Q9UPT6 1336 aa24.75■■□□□ 1.55
SHH-203ENST00000435425 ATP6V1AP38606 617 aa24.73■■□□□ 1.55
SHH-203ENST00000435425 TEFQ10587 303 aa24.73■■□□□ 1.55
SHH-203ENST00000435425 CCDC146Q8IYE0 955 aa24.73■■□□□ 1.55
SHH-203ENST00000435425 RTF1Q92541 710 aaKnown RBP24.73■■□□□ 1.55
SHH-203ENST00000435425 PTCD1O75127 700 aaKnown RBP24.72■■□□□ 1.55
SHH-203ENST00000435425 CCDC184Q52MB2 194 aa24.72■■□□□ 1.55
SHH-203ENST00000435425 AKT1S1Q96B36 256 aa24.72■■□□□ 1.55
SHH-203ENST00000435425 PDGFDQ9GZP0 370 aaPredicted RBP24.72■■□□□ 1.55
SHH-203ENST00000435425 MRC1P22897 1456 aa24.71■■□□□ 1.55
SHH-203ENST00000435425 SLC39A6Q13433 755 aa24.71■■□□□ 1.55
SHH-203ENST00000435425 DCTN1Q14203 1278 aa24.71■■□□□ 1.55
SHH-203ENST00000435425 MCM10Q7L590 875 aa24.71■■□□□ 1.55
SHH-203ENST00000435425 TFCP2L1Q9NZI6 479 aa24.71■■□□□ 1.55
SHH-203ENST00000435425 ADAMTS8Q9UP79 889 aa24.71■■□□□ 1.55
SHH-203ENST00000435425 TUBGCP6Q96RT7 1819 aa24.7■■□□□ 1.55
SHH-203ENST00000435425 ITPK1Q13572 414 aa24.69■■□□□ 1.54
SHH-203ENST00000435425 NFE2L2Q16236 605 aa24.69■■□□□ 1.54
SHH-203ENST00000435425 C4BP0C0L5 1744 aa24.69■■□□□ 1.54
SHH-203ENST00000435425 SIPA1L3O60292 1781 aaPredicted RBP24.68■■□□□ 1.54
SHH-203ENST00000435425 CASZ1Q86V15 1759 aa24.68■■□□□ 1.54
SHH-203ENST00000435425 LINC00116Q8NCU8 138 aa24.68■■□□□ 1.54
SHH-203ENST00000435425 SLC4A9Q96Q91 983 aa24.68■■□□□ 1.54
SHH-203ENST00000435425 CEMIPQ8WUJ3 1361 aa24.66■■□□□ 1.54
SHH-203ENST00000435425 HTATSF1O43719 755 aaKnown RBP24.65■■□□□ 1.54
SHH-203ENST00000435425 ZBTB7AO95365 584 aa24.65■■□□□ 1.54
SHH-203ENST00000435425 HMGB2P26583 209 aaKnown RBP24.65■■□□□ 1.54
SHH-203ENST00000435425 QSER1Q2KHR3 1735 aa24.65■■□□□ 1.54
SHH-203ENST00000435425 AK7Q96M32 723 aa24.65■■□□□ 1.54
SHH-203ENST00000435425 MRS2Q9HD23 443 aa24.65■■□□□ 1.54
SHH-203ENST00000435425 MSH5O43196 834 aa24.64■■□□□ 1.54
SHH-203ENST00000435425 TTC5Q8N0Z6 440 aa24.64■■□□□ 1.54
SHH-203ENST00000435425 RUNDC1Q96C34 613 aa24.64■■□□□ 1.54
SHH-203ENST00000435425 RRP7AQ9Y3A4 280 aaKnown RBP24.64■■□□□ 1.54
SHH-203ENST00000435425 PNPLA7Q6ZV29 1317 aa24.63■■□□□ 1.53
SHH-203ENST00000435425 RIPK4P57078 832 aa24.63■■□□□ 1.53
SHH-203ENST00000435425 NEUROD2Q15784 382 aa24.63■■□□□ 1.53
SHH-203ENST00000435425 ZNF831Q5JPB2 1677 aa24.62■■□□□ 1.53
SHH-203ENST00000435425 BTBD11A6QL63 1104 aa24.62■■□□□ 1.53
SHH-203ENST00000435425 TMPOP42166 694 aaKnown RBP24.62■■□□□ 1.53
SHH-203ENST00000435425 SMIM5Q71RC9 77 aa24.62■■□□□ 1.53
SHH-203ENST00000435425 ATF5Q9Y2D1 282 aaPredicted RBP24.62■■□□□ 1.53
SHH-203ENST00000435425 COL5A3P25940 1745 aaPredicted RBP24.61■■□□□ 1.53
SHH-203ENST00000435425 TJP1Q07157 1748 aa24.61■■□□□ 1.53
SHH-203ENST00000435425 THUMPD2Q9BTF0 503 aaKnown RBP24.61■■□□□ 1.53
SHH-203ENST00000435425 UBR3Q6ZT12 1888 aa24.6■■□□□ 1.53
SHH-203ENST00000435425 UBR2Q8IWV8 1755 aa24.6■■□□□ 1.53
SHH-203ENST00000435425 PHF14O94880 888 aa24.6■■□□□ 1.53
SHH-203ENST00000435425 SPON1Q9HCB6 807 aa24.6■■□□□ 1.53
SHH-203ENST00000435425 LRP5O75197 1615 aa24.6■■□□□ 1.53
SHH-203ENST00000435425 KCPQ6ZWJ8 1503 aa24.6■■□□□ 1.53
SHH-203ENST00000435425 GNPATO15228 680 aa24.59■■□□□ 1.53
SHH-203ENST00000435425 KCNQ3O43525 872 aa24.59■■□□□ 1.53
SHH-203ENST00000435425 ZNF790Q6PG37 636 aa24.59■■□□□ 1.53
SHH-203ENST00000435425 COL23A1Q86Y22 540 aaPredicted RBP24.59■■□□□ 1.53
SHH-203ENST00000435425 DNAJC10Q8IXB1 793 aa24.59■■□□□ 1.53
SHH-203ENST00000435425 AMIGO3Q86WK7 504 aa24.58■■□□□ 1.53
SHH-203ENST00000435425 TAF7Q15545 349 aaPredicted RBP24.57■■□□□ 1.52
SHH-203ENST00000435425 MIS18AQ9NYP9 233 aa24.57■■□□□ 1.52
SHH-203ENST00000435425 ZNF496Q96IT1 587 aaPredicted RBP24.56■■□□□ 1.52
SHH-203ENST00000435425 MYH14Q7Z406 1995 aaKnown RBP24.56■■□□□ 1.52
SHH-203ENST00000435425 FLAD1Q8NFF5 587 aa24.55■■□□□ 1.52
SHH-203ENST00000435425 PNISRQ8TF01 805 aaKnown RBP24.55■■□□□ 1.52
SHH-203ENST00000435425 MTFR1LQ9H019 292 aa24.55■■□□□ 1.52
SHH-203ENST00000435425 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP24.54■■□□□ 1.52
SHH-203ENST00000435425 CRKLP46109 303 aaKnown RBP24.54■■□□□ 1.52
SHH-203ENST00000435425 LMOD3Q0VAK6 560 aa24.54■■□□□ 1.52
SHH-203ENST00000435425 FMNL2Q96PY5 1086 aa24.54■■□□□ 1.52
SHH-203ENST00000435425 CNTNAP4Q9C0A0 1308 aa24.54■■□□□ 1.52
SHH-203ENST00000435425 CICQ96RK0 1608 aaPredicted RBP24.53■■□□□ 1.52
SHH-203ENST00000435425 SENP3-EIF4A1A0A087X0R7 540 aa24.53■■□□□ 1.52
SHH-203ENST00000435425 APAF1O14727 1248 aa24.53■■□□□ 1.52
SHH-203ENST00000435425 RC3H1Q5TC82 1133 aaKnown RBP24.53■■□□□ 1.52
SHH-203ENST00000435425 RTCBQ9Y3I0 505 aaKnown RBP24.53■■□□□ 1.52
SHH-203ENST00000435425 HEG1Q9ULI3 1381 aa24.53■■□□□ 1.52
SHH-203ENST00000435425 VSIG10Q8N0Z9 540 aa24.52■■□□□ 1.52
SHH-203ENST00000435425 SLC16A10Q8TF71 515 aa24.52■■□□□ 1.52
SHH-203ENST00000435425 PPP1R1BQ9UD71 204 aaPredicted RBP24.52■■□□□ 1.52
SHH-203ENST00000435425 SSFA2P28290 1259 aa24.51■■□□□ 1.51
SHH-203ENST00000435425 RPS6KA4O75676 772 aa24.5■■□□□ 1.51
SHH-203ENST00000435425 CYP19A1P11511 503 aaPredicted RBP24.5■■□□□ 1.51
SHH-203ENST00000435425 TRAPPC3LQ5T215 181 aa24.5■■□□□ 1.51
SHH-203ENST00000435425 MSL1Q68DK7 614 aa24.5■■□□□ 1.51
SHH-203ENST00000435425 TRIM35Q9UPQ4 493 aa24.5■■□□□ 1.51
SHH-203ENST00000435425 INTS5Q6P9B9 1019 aaKnown RBP24.49■■□□□ 1.51
SHH-203ENST00000435425 FAM9BQ8IZU0 186 aa24.49■■□□□ 1.51
SHH-203ENST00000435425 CCDC87Q9NVE4 849 aa24.49■■□□□ 1.51
SHH-203ENST00000435425 KDM3BQ7LBC6 1761 aa24.49■■□□□ 1.51
SHH-203ENST00000435425 PTGER2P43116 358 aa24.48■■□□□ 1.51
SHH-203ENST00000435425 LAS1LQ9Y4W2 734 aaKnown RBP24.47■■□□□ 1.51
SHH-203ENST00000435425 PRAMEF22A3QJZ6 481 aa24.46■■□□□ 1.51
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms