RNA–Protein interactions for RNA: ENST00000430711.5

COL28A1-202, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

TSL 5

Gene COL28A1, Length 2,323 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-202ENST00000430711 CCDC61Q9Y6R9 512 aa8.89□□□□□ -0.99
COL28A1-202ENST00000430711 TTC21BQ7Z4L5 1316 aa8.89□□□□□ -0.99
COL28A1-202ENST00000430711 OVOS2A0A0J9YW53 1432 aa8.89□□□□□ -0.99
COL28A1-202ENST00000430711 OVOS2Q6IE36 1432 aa8.89□□□□□ -0.99
COL28A1-202ENST00000430711 LTKP29376 864 aa8.89□□□□□ -0.99
COL28A1-202ENST00000430711 MRE11P49959 708 aa8.89□□□□□ -0.99
COL28A1-202ENST00000430711 NUTM2GQ5VZR2 741 aa8.89□□□□□ -0.99
COL28A1-202ENST00000430711 MCTP1Q6DN14 999 aa8.89□□□□□ -0.99
COL28A1-202ENST00000430711 SLC26A8Q96RN1 970 aa8.89□□□□□ -0.99
COL28A1-202ENST00000430711 PTPRUQ92729 1446 aa8.89□□□□□ -0.99
COL28A1-202ENST00000430711 PNMA6EA0A0J9YXQ4 647 aa8.88□□□□□ -0.99
COL28A1-202ENST00000430711 CYP2E1P05181 493 aaPredicted RBP8.88□□□□□ -0.99
COL28A1-202ENST00000430711 GPT2Q8TD30 523 aa8.88□□□□□ -0.99
COL28A1-202ENST00000430711 NAP1L5Q96NT1 182 aaPredicted RBP8.88□□□□□ -0.99
COL28A1-202ENST00000430711 ADAMTS13Q76LX8 1427 aa8.88□□□□□ -0.99
COL28A1-202ENST00000430711 TOPAZ1Q8N9V7 1692 aa8.88□□□□□ -0.99
COL28A1-202ENST00000430711 CLCN1P35523 988 aa8.88□□□□□ -0.99
COL28A1-202ENST00000430711 FOXD4L6Q3SYB3 417 aaPredicted RBP8.88□□□□□ -0.99
COL28A1-202ENST00000430711 FOXD4L3Q6VB84 417 aaPredicted RBP8.88□□□□□ -0.99
COL28A1-202ENST00000430711 ZNF428Q96B54 188 aa8.88□□□□□ -0.99
COL28A1-202ENST00000430711 API5Q9BZZ5 524 aaKnown RBP8.88□□□□□ -0.99
COL28A1-202ENST00000430711 PNNQ9H307 717 aaKnown RBP8.88□□□□□ -0.99
COL28A1-202ENST00000430711 NALCNQ8IZF0 1738 aa8.88□□□□□ -0.99
COL28A1-202ENST00000430711 CAVIN1Q6NZI2 390 aaKnown RBP8.87□□□□□ -0.99
COL28A1-202ENST00000430711 FMN2Q9NZ56 1722 aa8.87□□□□□ -0.99
COL28A1-202ENST00000430711 ESPNB1AK53 854 aa8.87□□□□□ -0.99
COL28A1-202ENST00000430711 LMBRD1Q9NUN5 540 aa8.87□□□□□ -0.99
COL28A1-202ENST00000430711 MAP4K4O95819 1239 aaPredicted RBP8.86□□□□□ -0.99
COL28A1-202ENST00000430711 LARP6Q9BRS8 491 aaKnown RBP8.86□□□□□ -0.99
COL28A1-202ENST00000430711 RBSNQ9H1K0 784 aa8.86□□□□□ -0.99
COL28A1-202ENST00000430711 CIZ1Q9ULV3 898 aaPredicted RBP8.86□□□□□ -0.99
COL28A1-202ENST00000430711 UBR1Q8IWV7 1749 aa8.86□□□□□ -0.99
COL28A1-202ENST00000430711 USHBP1Q8N6Y0 703 aa8.86□□□□□ -0.99
COL28A1-202ENST00000430711 ABCF1Q8NE71 845 aaKnown RBP eCLIP8.86□□□□□ -0.99
COL28A1-202ENST00000430711 DDX49Q9Y6V7 483 aaKnown RBP8.86□□□□□ -0.99
COL28A1-202ENST00000430711 SALL3Q9BXA9 1300 aa8.85□□□□□ -0.99
COL28A1-202ENST00000430711 FAM208AQ9UK61 1670 aaKnown RBP8.85□□□□□ -0.99
COL28A1-202ENST00000430711 XRN1Q8IZH2 1706 aaKnown RBP8.85□□□□□ -0.99
COL28A1-202ENST00000430711 TECPR2O15040 1411 aa8.85□□□□□ -0.99
COL28A1-202ENST00000430711 USP6P35125 1406 aa8.85□□□□□ -0.99
COL28A1-202ENST00000430711 NCLP19338 710 aaKnown RBP8.85□□□□□ -0.99
COL28A1-202ENST00000430711 COL9A3Q14050 684 aaPredicted RBP8.85□□□□□ -0.99
COL28A1-202ENST00000430711 RBM33Q96EV2 1170 aaKnown RBP8.85□□□□□ -0.99
COL28A1-202ENST00000430711 GBP4Q96PP9 640 aa8.85□□□□□ -0.99
COL28A1-202ENST00000430711 PRPF40AO75400 957 aaKnown RBP8.85□□□□□ -0.99
COL28A1-202ENST00000430711 PRIM1P49642 420 aaKnown RBP8.85□□□□□ -0.99
COL28A1-202ENST00000430711 PDE1AP54750 535 aa8.85□□□□□ -0.99
COL28A1-202ENST00000430711 ZSCAN23Q3MJ62 389 aa8.85□□□□□ -0.99
COL28A1-202ENST00000430711 TPRNQ4KMQ1 711 aa8.85□□□□□ -0.99
COL28A1-202ENST00000430711 EYA1Q99502 592 aa8.85□□□□□ -0.99
COL28A1-202ENST00000430711 TMEM63CQ9P1W3 806 aa8.85□□□□□ -0.99
COL28A1-202ENST00000430711 MARF1Q9Y4F3 1742 aaKnown RBP8.84□□□□□ -0.99
COL28A1-202ENST00000430711 PIK3C2AO00443 1686 aa8.84□□□□□ -0.99
COL28A1-202ENST00000430711 CALD1Q05682 793 aaKnown RBP8.84□□□□□ -0.99
COL28A1-202ENST00000430711 MPNDQ8N594 471 aa8.84□□□□□ -0.99
COL28A1-202ENST00000430711 UPF3BQ9BZI7 483 aaKnown RBP8.84□□□□□ -0.99
COL28A1-202ENST00000430711 GDPD2Q9HCC8 539 aa8.84□□□□□ -0.99
COL28A1-202ENST00000430711 EIF2AK3Q9NZJ5 1116 aaKnown RBP8.84□□□□□ -0.99
COL28A1-202ENST00000430711 SSH2Q76I76 1423 aa8.84□□□□□ -0.99
COL28A1-202ENST00000430711 RABEP1Q15276 862 aa8.83□□□□□ -1
COL28A1-202ENST00000430711 IL1RAPL2Q9NP60 686 aa8.83□□□□□ -1
COL28A1-202ENST00000430711 TSPYL4Q9UJ04 414 aa8.83□□□□□ -1
COL28A1-202ENST00000430711 TCHHQ07283 1943 aa8.83□□□□□ -1
COL28A1-202ENST00000430711 NWD1Q149M9 1564 aa8.83□□□□□ -1
COL28A1-202ENST00000430711 PLEKHG5O94827 1062 aa8.83□□□□□ -1
COL28A1-202ENST00000430711 ANXA1P04083 346 aa8.83□□□□□ -1
COL28A1-202ENST00000430711 KLHL40Q2TBA0 621 aa8.83□□□□□ -1
COL28A1-202ENST00000430711 CLEC17AQ6ZS10 378 aa8.83□□□□□ -1
COL28A1-202ENST00000430711 LTV1Q96GA3 475 aaPredicted RBP8.83□□□□□ -1
COL28A1-202ENST00000430711 PHAXQ9H814 394 aaKnown RBP8.83□□□□□ -1
COL28A1-202ENST00000430711 ZBTB7CA1YPR0 619 aa8.82□□□□□ -1
COL28A1-202ENST00000430711 NASPP49321 788 aaPredicted RBP8.82□□□□□ -1
COL28A1-202ENST00000430711 LMOD3Q0VAK6 560 aa8.82□□□□□ -1
COL28A1-202ENST00000430711 ESF1Q9H501 851 aaKnown RBP8.82□□□□□ -1
COL28A1-202ENST00000430711 LRRFIP2Q9Y608 721 aaKnown RBP8.82□□□□□ -1
COL28A1-202ENST00000430711 KIAA0232Q92628 1395 aa8.82□□□□□ -1
COL28A1-202ENST00000430711 TMEM2Q9UHN6 1383 aa8.82□□□□□ -1
COL28A1-202ENST00000430711 NEK4P51957 841 aa8.82□□□□□ -1
COL28A1-202ENST00000430711 NUTM1Q86Y26 1132 aa8.82□□□□□ -1
COL28A1-202ENST00000430711 RPAP2Q8IXW5 612 aaPredicted RBP8.82□□□□□ -1
COL28A1-202ENST00000430711 TMX3Q96JJ7 454 aa8.82□□□□□ -1
COL28A1-202ENST00000430711 SYCE3A1L190 88 aa8.81□□□□□ -1
COL28A1-202ENST00000430711 KCNQ3O43525 872 aa8.81□□□□□ -1
COL28A1-202ENST00000430711 GADD45BO75293 160 aaPredicted RBP8.81□□□□□ -1
COL28A1-202ENST00000430711 CPA1P15085 419 aa8.81□□□□□ -1
COL28A1-202ENST00000430711 RNF214Q8ND24 703 aa8.81□□□□□ -1
COL28A1-202ENST00000430711 IL17REQ8NFR9 667 aa8.81□□□□□ -1
COL28A1-202ENST00000430711 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP8.81□□□□□ -1
COL28A1-202ENST00000430711 USP31Q70CQ4 1352 aa8.81□□□□□ -1
COL28A1-202ENST00000430711 LRRC37A3O60309 1634 aa8.81□□□□□ -1
COL28A1-202ENST00000430711 KIF24Q5T7B8 1368 aa8.81□□□□□ -1
COL28A1-202ENST00000430711 FLIIQ13045 1269 aa8.81□□□□□ -1
COL28A1-202ENST00000430711 JARID2Q92833 1246 aaPredicted RBP8.81□□□□□ -1
COL28A1-202ENST00000430711 RILPL2Q969X0 211 aa8.81□□□□□ -1
COL28A1-202ENST00000430711 TNRQ92752 1358 aa8.8□□□□□ -1
COL28A1-202ENST00000430711 ERC2O15083 957 aa8.8□□□□□ -1
COL28A1-202ENST00000430711 FKBP5Q13451 457 aaPredicted RBP8.8□□□□□ -1
COL28A1-202ENST00000430711 DDX54Q8TDD1 881 aaKnown RBP8.8□□□□□ -1
COL28A1-202ENST00000430711 ESYT1Q9BSJ8 1104 aa8.8□□□□□ -1
COL28A1-202ENST00000430711 RGPD2P0DJD1 1756 aa8.8□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 37.6 ms