RNA–Protein interactions for RNA: ENST00000428696.6

SGCE-204, Transcript of sarcoglycan epsilon, humanhuman

TSL 1 (best) BASIC

Gene SGCE, Length 1,409 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SGCE-204ENST00000428696 SMARCC1Q92922 1105 aaPredicted RBP19.17■□□□□ 0.66
SGCE-204ENST00000428696 ATG3Q9NT62 314 aa19.17■□□□□ 0.66
SGCE-204ENST00000428696 SALL2Q9Y467 1007 aaPredicted RBP19.17■□□□□ 0.66
SGCE-204ENST00000428696 SBF2Q86WG5 1849 aa19.16■□□□□ 0.66
SGCE-204ENST00000428696 PTCD1O75127 700 aaKnown RBP19.16■□□□□ 0.66
SGCE-204ENST00000428696 THUMPD2Q9BTF0 503 aaKnown RBP19.16■□□□□ 0.66
SGCE-204ENST00000428696 CCER2I3L3R5 266 aa19.15■□□□□ 0.66
SGCE-204ENST00000428696 HTATSF1O43719 755 aaKnown RBP19.15■□□□□ 0.66
SGCE-204ENST00000428696 SLC39A6Q13433 755 aa19.15■□□□□ 0.66
SGCE-204ENST00000428696 PROM2Q8N271 834 aa19.15■□□□□ 0.66
SGCE-204ENST00000428696 CCNL1Q9UK58 526 aaPredicted RBP19.15■□□□□ 0.66
SGCE-204ENST00000428696 NHSQ6T4R5 1651 aa19.14■□□□□ 0.65
SGCE-204ENST00000428696 PALLDQ8WX93 1383 aa19.13■□□□□ 0.65
SGCE-204ENST00000428696 BTBD11A6QL63 1104 aa19.13■□□□□ 0.65
SGCE-204ENST00000428696 LMOD3Q0VAK6 560 aa19.13■□□□□ 0.65
SGCE-204ENST00000428696 NBPF14Q5TI25 921 aa19.13■□□□□ 0.65
SGCE-204ENST00000428696 TTC5Q8N0Z6 440 aa19.12■□□□□ 0.65
SGCE-204ENST00000428696 MIS18AQ9NYP9 233 aa19.12■□□□□ 0.65
SGCE-204ENST00000428696 LAS1LQ9Y4W2 734 aaKnown RBP19.12■□□□□ 0.65
SGCE-204ENST00000428696 TNS1Q9HBL0 1735 aaKnown RBP19.12■□□□□ 0.65
SGCE-204ENST00000428696 BTAF1O14981 1849 aa19.11■□□□□ 0.65
SGCE-204ENST00000428696 ATP6V1AP38606 617 aa19.1■□□□□ 0.65
SGCE-204ENST00000428696 TAF7Q15545 349 aaPredicted RBP19.1■□□□□ 0.65
SGCE-204ENST00000428696 SLC27A3Q5K4L6 730 aa19.1■□□□□ 0.65
SGCE-204ENST00000428696 LRRC4BQ9NT99 713 aa19.1■□□□□ 0.65
SGCE-204ENST00000428696 TOGARAM1Q9Y4F4 1720 aa19.1■□□□□ 0.65
SGCE-204ENST00000428696 LOC102724428A0A0B4J2F2 783 aa19.09■□□□□ 0.65
SGCE-204ENST00000428696 SIK1P57059 783 aa19.09■□□□□ 0.65
SGCE-204ENST00000428696 PSDA5PKW4 1024 aaPredicted RBP19.08■□□□□ 0.64
SGCE-204ENST00000428696 R3HDM1Q15032 1099 aaKnown RBP19.08■□□□□ 0.64
SGCE-204ENST00000428696 STK32BQ9NY57 414 aa19.08■□□□□ 0.64
SGCE-204ENST00000428696 ITGB4P16144 1822 aa19.07■□□□□ 0.64
SGCE-204ENST00000428696 TRIM35Q9UPQ4 493 aa19.07■□□□□ 0.64
SGCE-204ENST00000428696 CEMIPQ8WUJ3 1361 aa19.07■□□□□ 0.64
SGCE-204ENST00000428696 KCNQ3O43525 872 aa19.06■□□□□ 0.64
SGCE-204ENST00000428696 ZNF790Q6PG37 636 aa19.06■□□□□ 0.64
SGCE-204ENST00000428696 SCN11AQ9UI33 1791 aa19.04■□□□□ 0.64
SGCE-204ENST00000428696 TFCP2L1Q9NZI6 479 aa19.04■□□□□ 0.64
SGCE-204ENST00000428696 TSPYL4Q9UJ04 414 aa19.04■□□□□ 0.64
SGCE-204ENST00000428696 ITPK1Q13572 414 aa19.03■□□□□ 0.64
SGCE-204ENST00000428696 ZNF496Q96IT1 587 aaPredicted RBP19.02■□□□□ 0.64
SGCE-204ENST00000428696 AK7Q96M32 723 aa19.02■□□□□ 0.64
SGCE-204ENST00000428696 FMNL2Q96PY5 1086 aa19.02■□□□□ 0.64
SGCE-204ENST00000428696 SLC4A9Q96Q91 983 aa19.02■□□□□ 0.64
SGCE-204ENST00000428696 ANO8Q9HCE9 1232 aaPredicted RBP19.02■□□□□ 0.64
SGCE-204ENST00000428696 SLC15A2Q16348 729 aa19.01■□□□□ 0.63
SGCE-204ENST00000428696 DNAJC10Q8IXB1 793 aa19.01■□□□□ 0.63
SGCE-204ENST00000428696 LINC00116Q8NCU8 138 aa19.01■□□□□ 0.63
SGCE-204ENST00000428696 CALD1Q05682 793 aaKnown RBP19■□□□□ 0.63
SGCE-204ENST00000428696 HMGB2P26583 209 aaKnown RBP19■□□□□ 0.63
SGCE-204ENST00000428696 ZNF827Q17R98 1081 aa19■□□□□ 0.63
SGCE-204ENST00000428696 DLG5Q8TDM6 1919 aa18.99■□□□□ 0.63
SGCE-204ENST00000428696 MRC1P22897 1456 aa18.99■□□□□ 0.63
SGCE-204ENST00000428696 PHF14O94880 888 aa18.99■□□□□ 0.63
SGCE-204ENST00000428696 SMIM5Q71RC9 77 aa18.99■□□□□ 0.63
SGCE-204ENST00000428696 WWC1Q8IX03 1113 aa18.99■□□□□ 0.63
SGCE-204ENST00000428696 GNPATO15228 680 aa18.97■□□□□ 0.63
SGCE-204ENST00000428696 STARD3NLO95772 234 aa18.97■□□□□ 0.63
SGCE-204ENST00000428696 AKT1S1Q96B36 256 aa18.97■□□□□ 0.63
SGCE-204ENST00000428696 ZNF330Q9Y3S2 320 aaPredicted RBP18.96■□□□□ 0.63
SGCE-204ENST00000428696 ADAMTS7Q9UKP4 1686 aa18.95■□□□□ 0.62
SGCE-204ENST00000428696 SNRPA1P09661 255 aaKnown RBP18.95■□□□□ 0.62
SGCE-204ENST00000428696 GNAI1P63096 354 aa18.95■□□□□ 0.62
SGCE-204ENST00000428696 VSIG10Q8N0Z9 540 aa18.95■□□□□ 0.62
SGCE-204ENST00000428696 ARXQ96QS3 562 aa18.95■□□□□ 0.62
SGCE-204ENST00000428696 TEX13AQ9BXU3 409 aaPredicted RBP18.95■□□□□ 0.62
SGCE-204ENST00000428696 HEG1Q9ULI3 1381 aa18.95■□□□□ 0.62
SGCE-204ENST00000428696 VIRMAQ69YN4 1812 aaKnown RBP18.95■□□□□ 0.62
SGCE-204ENST00000428696 PRAMEF22A3QJZ6 481 aa18.94■□□□□ 0.62
SGCE-204ENST00000428696 CHL1O00533 1208 aa18.94■□□□□ 0.62
SGCE-204ENST00000428696 CANXP27824 592 aaKnown RBP18.94■□□□□ 0.62
SGCE-204ENST00000428696 CRKLP46109 303 aaKnown RBP18.94■□□□□ 0.62
SGCE-204ENST00000428696 EIF4A1P60842 406 aaKnown RBP18.94■□□□□ 0.62
SGCE-204ENST00000428696 CCDC27Q2M243 656 aa18.94■□□□□ 0.62
SGCE-204ENST00000428696 CFAP44Q96MT7 982 aa18.94■□□□□ 0.62
SGCE-204ENST00000428696 PDGFDQ9GZP0 370 aaPredicted RBP18.94■□□□□ 0.62
SGCE-204ENST00000428696 RTCBQ9Y3I0 505 aaKnown RBP18.94■□□□□ 0.62
SGCE-204ENST00000428696 USP16Q9Y5T5 823 aa18.94■□□□□ 0.62
SGCE-204ENST00000428696 RGPD3A6NKT7 1758 aaPredicted RBP18.93■□□□□ 0.62
SGCE-204ENST00000428696 RGPD4Q7Z3J3 1758 aa18.93■□□□□ 0.62
SGCE-204ENST00000428696 NUP188Q5SRE5 1749 aa18.93■□□□□ 0.62
SGCE-204ENST00000428696 CYP19A1P11511 503 aaPredicted RBP18.93■□□□□ 0.62
SGCE-204ENST00000428696 LY75O60449 1722 aa18.93■□□□□ 0.62
SGCE-204ENST00000428696 RREB1Q92766 1687 aa18.93■□□□□ 0.62
SGCE-204ENST00000428696 MBIPQ9NS73 344 aa18.92■□□□□ 0.62
SGCE-204ENST00000428696 CCDC87Q9NVE4 849 aa18.92■□□□□ 0.62
SGCE-204ENST00000428696 IFT57Q9NWB7 429 aa18.92■□□□□ 0.62
SGCE-204ENST00000428696 BABAM1Q9NWV8 329 aa18.92■□□□□ 0.62
SGCE-204ENST00000428696 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP18.91■□□□□ 0.62
SGCE-204ENST00000428696 ELL2O00472 640 aaPredicted RBP18.91■□□□□ 0.62
SGCE-204ENST00000428696 A1BGP04217 495 aa18.91■□□□□ 0.62
SGCE-204ENST00000428696 EIF2S2P20042 333 aaKnown RBP18.91■□□□□ 0.62
SGCE-204ENST00000428696 NPM2Q86SE8 214 aaKnown RBP18.91■□□□□ 0.62
SGCE-204ENST00000428696 NECTIN2Q92692 538 aa18.91■□□□□ 0.62
SGCE-204ENST00000428696 TSR2Q969E8 191 aaKnown RBP18.91■□□□□ 0.62
SGCE-204ENST00000428696 KCPQ6ZWJ8 1503 aa18.91■□□□□ 0.62
SGCE-204ENST00000428696 ZBTB7AO95365 584 aa18.91■□□□□ 0.62
SGCE-204ENST00000428696 PIP4K2AP48426 406 aaPredicted RBP18.91■□□□□ 0.62
SGCE-204ENST00000428696 HNRNPUQ00839 825 aaKnown RBP eCLIP18.91■□□□□ 0.62
SGCE-204ENST00000428696 KRT24Q2M2I5 525 aa18.91■□□□□ 0.62
Retrieved 100 of 20,778 RNA–protein pairs in 39.9 ms