RNA–Protein interactions for RNA: ENST00000427724.6

TCOF1-204, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 5

Gene TCOF1, Length 4,272 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-204ENST00000427724 GNAI2P04899 355 aa12.86□□□□□ -0.35
TCOF1-204ENST00000427724 RARSP54136 660 aaKnown RBP12.86□□□□□ -0.35
TCOF1-204ENST00000427724 IFIT5Q13325 482 aaKnown RBP12.86□□□□□ -0.35
TCOF1-204ENST00000427724 TPTE2Q6XPS3 522 aa12.86□□□□□ -0.35
TCOF1-204ENST00000427724 FLT4P35916 1363 aa12.86□□□□□ -0.35
TCOF1-204ENST00000427724 SHANK2Q9UPX8 1470 aa12.86□□□□□ -0.35
TCOF1-204ENST00000427724 AAMPQ13685 434 aa12.86□□□□□ -0.35
TCOF1-204ENST00000427724 DZIP3Q86Y13 1208 aaKnown RBP12.86□□□□□ -0.35
TCOF1-204ENST00000427724 NOB1Q9ULX3 412 aaKnown RBP12.86□□□□□ -0.35
TCOF1-204ENST00000427724 PCDH11XQ9BZA7 1347 aa12.86□□□□□ -0.35
TCOF1-204ENST00000427724 PCDH11YQ9BZA8 1340 aa12.86□□□□□ -0.35
TCOF1-204ENST00000427724 RBM26Q5T8P6 1007 aaKnown RBP12.86□□□□□ -0.35
TCOF1-204ENST00000427724 LRP2BPQ9P2M1 347 aa12.86□□□□□ -0.35
TCOF1-204ENST00000427724 ERC2O15083 957 aa12.85□□□□□ -0.35
TCOF1-204ENST00000427724 AKAP4Q5JQC9 854 aa12.85□□□□□ -0.35
TCOF1-204ENST00000427724 CHMP4CQ96CF2 233 aa12.85□□□□□ -0.35
TCOF1-204ENST00000427724 ATF5Q9Y2D1 282 aaPredicted RBP12.85□□□□□ -0.35
TCOF1-204ENST00000427724 PLEKHG1Q9ULL1 1385 aa12.85□□□□□ -0.35
TCOF1-204ENST00000427724 NINLQ9Y2I6 1382 aa12.85□□□□□ -0.35
TCOF1-204ENST00000427724 MVPQ14764 893 aaKnown RBP12.85□□□□□ -0.35
TCOF1-204ENST00000427724 WDR63Q8IWG1 891 aa12.85□□□□□ -0.35
TCOF1-204ENST00000427724 CCDC24Q8N4L8 307 aa12.85□□□□□ -0.35
TCOF1-204ENST00000427724 F6X3S4 739 aa12.85□□□□□ -0.35
TCOF1-204ENST00000427724 UNC5CLQ8IV45 518 aa12.85□□□□□ -0.35
TCOF1-204ENST00000427724 FSD1Q9BTV5 496 aa12.85□□□□□ -0.35
TCOF1-204ENST00000427724 ABCC11Q96J66 1382 aa12.85□□□□□ -0.35
TCOF1-204ENST00000427724 RUFY2Q8WXA3 655 aa12.85□□□□□ -0.35
TCOF1-204ENST00000427724 BCS1LQ9Y276 419 aa12.85□□□□□ -0.35
TCOF1-204ENST00000427724 KIAA0232Q92628 1395 aa12.84□□□□□ -0.35
TCOF1-204ENST00000427724 RBM6P78332 1123 aaKnown RBP12.84□□□□□ -0.35
TCOF1-204ENST00000427724 RRP12Q5JTH9 1297 aaKnown RBP12.84□□□□□ -0.35
TCOF1-204ENST00000427724 DDX49Q9Y6V7 483 aaKnown RBP12.84□□□□□ -0.35
TCOF1-204ENST00000427724 CFAP74Q9C0B2 1584 aa12.84□□□□□ -0.35
TCOF1-204ENST00000427724 CAVIN4Q5BKX8 364 aa12.84□□□□□ -0.35
TCOF1-204ENST00000427724 NFXL1Q6ZNB6 911 aa12.84□□□□□ -0.35
TCOF1-204ENST00000427724 MBD5Q9P267 1494 aa12.84□□□□□ -0.35
TCOF1-204ENST00000427724 ANKRD36BQ8N2N9 1353 aa12.84□□□□□ -0.35
TCOF1-204ENST00000427724 EFCAB6Q5THR3 1501 aa12.84□□□□□ -0.35
TCOF1-204ENST00000427724 IFIT1P09914 478 aaKnown RBP12.84□□□□□ -0.35
TCOF1-204ENST00000427724 CCT4P50991 539 aaKnown RBP12.84□□□□□ -0.35
TCOF1-204ENST00000427724 COPS6Q7L5N1 327 aa12.84□□□□□ -0.35
TCOF1-204ENST00000427724 C8orf34Q49A92 452 aa12.83□□□□□ -0.36
TCOF1-204ENST00000427724 UBE3BQ7Z3V4 1068 aa12.83□□□□□ -0.36
TCOF1-204ENST00000427724 HYPKQ9NX55 129 aa12.83□□□□□ -0.36
TCOF1-204ENST00000427724 NSFL1CQ9UNZ2 370 aaKnown RBP12.83□□□□□ -0.36
TCOF1-204ENST00000427724 TTC37Q6PGP7 1564 aa12.83□□□□□ -0.36
TCOF1-204ENST00000427724 ARHGEF12Q9NZN5 1544 aa12.83□□□□□ -0.36
TCOF1-204ENST00000427724 MTHFSDQ2M296 383 aaKnown RBP12.83□□□□□ -0.36
TCOF1-204ENST00000427724 WDR78Q5VTH9 848 aa12.83□□□□□ -0.36
TCOF1-204ENST00000427724 ERICH2A1L162 156 aa12.83□□□□□ -0.36
TCOF1-204ENST00000427724 KCNQ4P56696 695 aa12.83□□□□□ -0.36
TCOF1-204ENST00000427724 RBM10P98175 930 aaKnown RBP12.83□□□□□ -0.36
TCOF1-204ENST00000427724 FOXD4L6Q3SYB3 417 aaPredicted RBP12.83□□□□□ -0.36
TCOF1-204ENST00000427724 FOXD4L3Q6VB84 417 aaPredicted RBP12.83□□□□□ -0.36
TCOF1-204ENST00000427724 ANKRD13DQ6ZTN6 518 aa12.83□□□□□ -0.36
TCOF1-204ENST00000427724 PLEKHG3A1L390 1219 aa12.82□□□□□ -0.36
TCOF1-204ENST00000427724 CDC5LQ99459 802 aaKnown RBP12.82□□□□□ -0.36
TCOF1-204ENST00000427724 NLRP1Q9C000 1473 aa12.82□□□□□ -0.36
TCOF1-204ENST00000427724 ABCC1P33527 1531 aa12.82□□□□□ -0.36
TCOF1-204ENST00000427724 TRAK2O60296 914 aa12.82□□□□□ -0.36
TCOF1-204ENST00000427724 IDH1O75874 414 aaKnown RBP12.82□□□□□ -0.36
TCOF1-204ENST00000427724 ATF7IPQ6VMQ6 1270 aa12.82□□□□□ -0.36
TCOF1-204ENST00000427724 XAGE3Q8WTP9 111 aa12.82□□□□□ -0.36
TCOF1-204ENST00000427724 RRP9O43818 475 aaKnown RBP12.82□□□□□ -0.36
TCOF1-204ENST00000427724 LDHAL6AQ6ZMR3 332 aa12.82□□□□□ -0.36
TCOF1-204ENST00000427724 RALYLQ86SE5 291 aaKnown RBP12.82□□□□□ -0.36
TCOF1-204ENST00000427724 CPLX2Q6PUV4 134 aaKnown RBP12.82□□□□□ -0.36
TCOF1-204ENST00000427724 GJA3Q9Y6H8 435 aa12.82□□□□□ -0.36
TCOF1-204ENST00000427724 MYO5CQ9NQX4 1742 aa12.81□□□□□ -0.36
TCOF1-204ENST00000427724 ANKRD18BA2A2Z9 1011 aa12.81□□□□□ -0.36
TCOF1-204ENST00000427724 ADGRL2O95490 1459 aa12.81□□□□□ -0.36
TCOF1-204ENST00000427724 ANO2Q9NQ90 1003 aa12.81□□□□□ -0.36
TCOF1-204ENST00000427724 PI4KAP2A4QPH2 592 aa12.81□□□□□ -0.36
TCOF1-204ENST00000427724 PTMSP20962 102 aa12.81□□□□□ -0.36
TCOF1-204ENST00000427724 MRE11P49959 708 aa12.81□□□□□ -0.36
TCOF1-204ENST00000427724 PI4KAP1Q8N8J0 262 aa12.81□□□□□ -0.36
TCOF1-204ENST00000427724 DNAAF4Q8WXU2 420 aa12.81□□□□□ -0.36
TCOF1-204ENST00000427724 ZNF526Q8TF50 670 aaPredicted RBP12.8□□□□□ -0.36
TCOF1-204ENST00000427724 TNNQ9UQP3 1299 aa12.8□□□□□ -0.36
TCOF1-204ENST00000427724 A0A1W2PP64 1363 aa12.8□□□□□ -0.36
TCOF1-204ENST00000427724 PSDA5PKW4 1024 aaPredicted RBP12.8□□□□□ -0.36
TCOF1-204ENST00000427724 MYCNP04198 464 aaPredicted RBP12.8□□□□□ -0.36
TCOF1-204ENST00000427724 ZKSCAN1P17029 563 aaPredicted RBP12.8□□□□□ -0.36
TCOF1-204ENST00000427724 ZC3H12CQ9C0D7 883 aaKnown RBP12.8□□□□□ -0.36
TCOF1-204ENST00000427724 CWC25Q9NXE8 425 aaPredicted RBP12.8□□□□□ -0.36
TCOF1-204ENST00000427724 CLASP1Q7Z460 1538 aa12.8□□□□□ -0.36
TCOF1-204ENST00000427724 F8W031 263 aaPredicted RBP12.79□□□□□ -0.36
TCOF1-204ENST00000427724 OGFOD1Q8N543 542 aa12.79□□□□□ -0.36
TCOF1-204ENST00000427724 CNBD1Q8NA66 436 aa12.79□□□□□ -0.36
TCOF1-204ENST00000427724 IL1RAPL2Q9NP60 686 aa12.79□□□□□ -0.36
TCOF1-204ENST00000427724 ROBO2Q9HCK4 1378 aa12.79□□□□□ -0.36
TCOF1-204ENST00000427724 CPLX1O14810 134 aa12.79□□□□□ -0.36
TCOF1-204ENST00000427724 ECM2O94769 699 aaPredicted RBP12.79□□□□□ -0.36
TCOF1-204ENST00000427724 DNAJC10Q8IXB1 793 aa12.79□□□□□ -0.36
TCOF1-204ENST00000427724 SSH1Q8WYL5 1049 aa12.79□□□□□ -0.36
TCOF1-204ENST00000427724 MAP3K2Q9Y2U5 619 aa12.79□□□□□ -0.36
TCOF1-204ENST00000427724 SAMD9LQ8IVG5 1584 aa12.79□□□□□ -0.36
TCOF1-204ENST00000427724 COL17A1Q9UMD9 1497 aaPredicted RBP12.79□□□□□ -0.36
TCOF1-204ENST00000427724 TMEM57Q8N5G2 664 aa12.79□□□□□ -0.36
TCOF1-204ENST00000427724 ZNF408Q9H9D4 720 aa12.79□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms