RNA–Protein interactions for RNA: ENST00000427461.1

LSG1-202, Transcript of large 60S subunit nuclear export GTPase 1, humanhuman

TSL 5

Gene LSG1, Length 755 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSG1-202ENST00000427461 NBPF6Q5VWK0 638 aa13.24□□□□□ -0.29
LSG1-202ENST00000427461 SMARCC1Q92922 1105 aaPredicted RBP13.24□□□□□ -0.29
LSG1-202ENST00000427461 NBPF4Q96M43 638 aa13.24□□□□□ -0.29
LSG1-202ENST00000427461 CCDC87Q9NVE4 849 aa13.24□□□□□ -0.29
LSG1-202ENST00000427461 PIM2Q9P1W9 311 aa13.24□□□□□ -0.29
LSG1-202ENST00000427461 LOC102724428A0A0B4J2F2 783 aa13.23□□□□□ -0.29
LSG1-202ENST00000427461 LBX1P52954 281 aa13.23□□□□□ -0.29
LSG1-202ENST00000427461 SIK1P57059 783 aa13.23□□□□□ -0.29
LSG1-202ENST00000427461 RASSF7Q02833 373 aa13.23□□□□□ -0.29
LSG1-202ENST00000427461 PIGBQ92521 554 aa13.23□□□□□ -0.29
LSG1-202ENST00000427461 MAP3K19Q56UN5 1328 aa13.22□□□□□ -0.29
LSG1-202ENST00000427461 CTCFP49711 727 aaPredicted RBP13.22□□□□□ -0.29
LSG1-202ENST00000427461 TMF1P82094 1093 aa13.22□□□□□ -0.29
LSG1-202ENST00000427461 DALRD3Q5D0E6 543 aaKnown RBP13.22□□□□□ -0.29
LSG1-202ENST00000427461 GLTPD2A6NH11 291 aa13.21□□□□□ -0.29
LSG1-202ENST00000427461 POTECB2RU33 542 aa13.21□□□□□ -0.29
LSG1-202ENST00000427461 CYP27B1O15528 508 aa13.21□□□□□ -0.29
LSG1-202ENST00000427461 CREBZFQ9NS37 354 aa13.21□□□□□ -0.29
LSG1-202ENST00000427461 CHRNA5P30532 468 aa13.2□□□□□ -0.3
LSG1-202ENST00000427461 AMPHP49418 695 aa13.2□□□□□ -0.3
LSG1-202ENST00000427461 NLGN1Q8N2Q7 840 aa13.2□□□□□ -0.3
LSG1-202ENST00000427461 RAPGEF4Q8WZA2 1011 aa13.2□□□□□ -0.3
LSG1-202ENST00000427461 PARP3Q9Y6F1 533 aa13.2□□□□□ -0.3
LSG1-202ENST00000427461 PCDH11XQ9BZA7 1347 aa13.19□□□□□ -0.3
LSG1-202ENST00000427461 PCDH11YQ9BZA8 1340 aa13.19□□□□□ -0.3
LSG1-202ENST00000427461 CCDC85CA6NKD9 419 aa13.19□□□□□ -0.3
LSG1-202ENST00000427461 GYS1P13807 737 aa13.19□□□□□ -0.3
LSG1-202ENST00000427461 TATP17735 454 aaPredicted RBP13.19□□□□□ -0.3
LSG1-202ENST00000427461 ATP6V1AP38606 617 aa13.19□□□□□ -0.3
LSG1-202ENST00000427461 TRAPPC3LQ5T215 181 aa13.19□□□□□ -0.3
LSG1-202ENST00000427461 AIDAQ96BJ3 306 aa13.19□□□□□ -0.3
LSG1-202ENST00000427461 CNTNAP1P78357 1384 aa13.19□□□□□ -0.3
LSG1-202ENST00000427461 CCDC88AQ3V6T2 1871 aa13.19□□□□□ -0.3
LSG1-202ENST00000427461 CGNL1Q0VF96 1302 aa13.18□□□□□ -0.3
LSG1-202ENST00000427461 RGS19P49795 217 aa13.18□□□□□ -0.3
LSG1-202ENST00000427461 TMC1Q8TDI8 760 aa13.18□□□□□ -0.3
LSG1-202ENST00000427461 ARHGEF1Q92888 912 aaKnown RBP13.18□□□□□ -0.3
LSG1-202ENST00000427461 SLC12A5Q9H2X9 1139 aa13.18□□□□□ -0.3
LSG1-202ENST00000427461 ASAP1Q9ULH1 1129 aa13.18□□□□□ -0.3
LSG1-202ENST00000427461 TIAM2Q8IVF5 1701 aa13.17□□□□□ -0.3
LSG1-202ENST00000427461 KDM6AO15550 1401 aaPredicted RBP13.17□□□□□ -0.3
LSG1-202ENST00000427461 EDC4Q6P2E9 1401 aaKnown RBP13.17□□□□□ -0.3
LSG1-202ENST00000427461 POTEIP0CG38 1075 aa13.17□□□□□ -0.3
LSG1-202ENST00000427461 POTEJP0CG39 1038 aa13.17□□□□□ -0.3
LSG1-202ENST00000427461 VEGFBP49765 207 aa13.17□□□□□ -0.3
LSG1-202ENST00000427461 RTCBQ9Y3I0 505 aaKnown RBP13.17□□□□□ -0.3
LSG1-202ENST00000427461 ZC3H4Q9UPT8 1303 aaKnown RBP13.16□□□□□ -0.3
LSG1-202ENST00000427461 VIRMAQ69YN4 1812 aaKnown RBP13.16□□□□□ -0.3
LSG1-202ENST00000427461 HSPA8P11142 646 aaKnown RBP13.16□□□□□ -0.3
LSG1-202ENST00000427461 HDGFL2Q7Z4V5 671 aaPredicted RBP13.16□□□□□ -0.3
LSG1-202ENST00000427461 WBP1LQ9NX94 342 aa13.16□□□□□ -0.3
LSG1-202ENST00000427461 TNRC18O15417 2968 aaPredicted RBP13.16□□□□□ -0.3
LSG1-202ENST00000427461 LMNB1P20700 586 aa13.15□□□□□ -0.3
LSG1-202ENST00000427461 RRS1Q15050 365 aaKnown RBP13.14□□□□□ -0.31
LSG1-202ENST00000427461 CHADLQ6NUI6 762 aa13.14□□□□□ -0.31
LSG1-202ENST00000427461 A0A1W2PP64 1363 aa13.14□□□□□ -0.31
LSG1-202ENST00000427461 RFC4P35249 363 aa13.13□□□□□ -0.31
LSG1-202ENST00000427461 DDR1Q08345 913 aa13.13□□□□□ -0.31
LSG1-202ENST00000427461 SLC4A9Q96Q91 983 aa13.13□□□□□ -0.31
LSG1-202ENST00000427461 COG3Q96JB2 828 aa13.12□□□□□ -0.31
LSG1-202ENST00000427461 ATG3Q9NT62 314 aa13.12□□□□□ -0.31
LSG1-202ENST00000427461 TMOD3Q9NYL9 352 aa13.12□□□□□ -0.31
LSG1-202ENST00000427461 NPM3O75607 178 aaKnown RBP13.11□□□□□ -0.31
LSG1-202ENST00000427461 FKBP8Q14318 412 aa13.11□□□□□ -0.31
LSG1-202ENST00000427461 CNKSR2Q8WXI2 1034 aa13.11□□□□□ -0.31
LSG1-202ENST00000427461 SRP68Q9UHB9 627 aaKnown RBP13.11□□□□□ -0.31
LSG1-202ENST00000427461 NKX1-1Q15270 411 aaPredicted RBP13.1□□□□□ -0.31
LSG1-202ENST00000427461 CFAP44Q96MT7 982 aa13.1□□□□□ -0.31
LSG1-202ENST00000427461 MYH14Q7Z406 1995 aaKnown RBP13.1□□□□□ -0.31
LSG1-202ENST00000427461 COL5A3P25940 1745 aaPredicted RBP13.1□□□□□ -0.31
LSG1-202ENST00000427461 PASKQ96RG2 1323 aa13.1□□□□□ -0.31
LSG1-202ENST00000427461 KDRP35968 1356 aa13.09□□□□□ -0.31
LSG1-202ENST00000427461 NFKBIEO00221 500 aa13.09□□□□□ -0.31
LSG1-202ENST00000427461 RPS6KA4O75676 772 aa13.09□□□□□ -0.31
LSG1-202ENST00000427461 HSP90AB2PQ58FF8 381 aa13.09□□□□□ -0.31
LSG1-202ENST00000427461 TERF2IPQ9NYB0 399 aa13.09□□□□□ -0.31
LSG1-202ENST00000427461 RTL1A6NKG5 1358 aa13.08□□□□□ -0.31
LSG1-202ENST00000427461 SMG6Q86US8 1419 aaKnown RBP13.08□□□□□ -0.32
LSG1-202ENST00000427461 DPY19L2Q6NUT2 758 aa13.08□□□□□ -0.32
LSG1-202ENST00000427461 RBM42Q9BTD8 480 aaKnown RBP13.08□□□□□ -0.32
LSG1-202ENST00000427461 ROCK2O75116 1388 aaKnown RBP13.07□□□□□ -0.32
LSG1-202ENST00000427461 TMEM88BA6NKF7 163 aa13.07□□□□□ -0.32
LSG1-202ENST00000427461 RC3H1Q5TC82 1133 aaKnown RBP13.07□□□□□ -0.32
LSG1-202ENST00000427461 POLRMTO00411 1230 aaKnown RBP13.06□□□□□ -0.32
LSG1-202ENST00000427461 DDNO94850 711 aaPredicted RBP13.06□□□□□ -0.32
LSG1-202ENST00000427461 CNTNAP4Q9C0A0 1308 aa13.06□□□□□ -0.32
LSG1-202ENST00000427461 L3MBTL2Q969R5 705 aa13.05□□□□□ -0.32
LSG1-202ENST00000427461 DICER1Q9UPY3 1922 aaKnown RBP13.05□□□□□ -0.32
LSG1-202ENST00000427461 DLEC1Q9Y238 1755 aa13.04□□□□□ -0.32
LSG1-202ENST00000427461 AFDNP55196 1824 aaKnown RBP13.04□□□□□ -0.32
LSG1-202ENST00000427461 ITGBL1O95965 494 aaPredicted RBP13.04□□□□□ -0.32
LSG1-202ENST00000427461 TM4SF1P30408 202 aa13.04□□□□□ -0.32
LSG1-202ENST00000427461 DEFB115Q30KQ5 88 aa13.04□□□□□ -0.32
LSG1-202ENST00000427461 ERFEQ4G0M1 354 aa13.04□□□□□ -0.32
LSG1-202ENST00000427461 TSKSQ9UJT2 592 aa13.04□□□□□ -0.32
LSG1-202ENST00000427461 ZNF831Q5JPB2 1677 aa13.04□□□□□ -0.32
LSG1-202ENST00000427461 WDR33Q9C0J8 1336 aaKnown RBP13.04□□□□□ -0.32
LSG1-202ENST00000427461 USP42Q9H9J4 1324 aaKnown RBP13.04□□□□□ -0.32
LSG1-202ENST00000427461 INSRP06213 1382 aa13.04□□□□□ -0.32
LSG1-202ENST00000427461 MAP2K1Q02750 393 aaPredicted RBP13.03□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms