RNA–Protein interactions for RNA: ENST00000426246.2

USP42-203, Transcript of ubiquitin specific peptidase 42, humanhuman

TSL 2

Gene USP42, Length 3,611 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP42-203ENST00000426246 CCDC9Q9Y3X0 531 aaKnown RBP16.51■□□□□ 0.23
USP42-203ENST00000426246 ANTXR1Q9H6X2 564 aa16.51■□□□□ 0.23
USP42-203ENST00000426246 GRPEL1Q9HAV7 217 aa16.51■□□□□ 0.23
USP42-203ENST00000426246 PXDNQ92626 1479 aa16.51■□□□□ 0.23
USP42-203ENST00000426246 CAMTA1Q9Y6Y1 1673 aa16.51■□□□□ 0.23
USP42-203ENST00000426246 LRRC37A3O60309 1634 aa16.5■□□□□ 0.23
USP42-203ENST00000426246 VAMP4O75379 141 aa16.5■□□□□ 0.23
USP42-203ENST00000426246 PRPF40AO75400 957 aaKnown RBP16.5■□□□□ 0.23
USP42-203ENST00000426246 AMPHP49418 695 aa16.5■□□□□ 0.23
USP42-203ENST00000426246 IL1RAPL2Q9NP60 686 aa16.5■□□□□ 0.23
USP42-203ENST00000426246 FKBP5Q13451 457 aaPredicted RBP16.49■□□□□ 0.23
USP42-203ENST00000426246 MEIS3Q99687 375 aa16.49■□□□□ 0.23
USP42-203ENST00000426246 BCL11BQ9C0K0 894 aaPredicted RBP16.49■□□□□ 0.23
USP42-203ENST00000426246 NUCB1Q02818 461 aa16.49■□□□□ 0.23
USP42-203ENST00000426246 PKP1Q13835 747 aa16.49■□□□□ 0.23
USP42-203ENST00000426246 ANO2Q9NQ90 1003 aa16.49■□□□□ 0.23
USP42-203ENST00000426246 RGPD5Q99666 1765 aa16.49■□□□□ 0.23
USP42-203ENST00000426246 CT47B1P0C2W7 299 aaPredicted RBP16.48■□□□□ 0.23
USP42-203ENST00000426246 UPF3BQ9BZI7 483 aaKnown RBP16.48■□□□□ 0.23
USP42-203ENST00000426246 TSPYL4Q9UJ04 414 aa16.48■□□□□ 0.23
USP42-203ENST00000426246 CHMP3Q9Y3E7 222 aa16.48■□□□□ 0.23
USP42-203ENST00000426246 ZNF335Q9H4Z2 1342 aaPredicted RBP16.48■□□□□ 0.23
USP42-203ENST00000426246 DDX11L8A8MPP1 907 aa16.48■□□□□ 0.23
USP42-203ENST00000426246 CALD1Q05682 793 aaKnown RBP16.48■□□□□ 0.23
USP42-203ENST00000426246 KRT28Q7Z3Y7 464 aa16.48■□□□□ 0.23
USP42-203ENST00000426246 USHBP1Q8N6Y0 703 aa16.48■□□□□ 0.23
USP42-203ENST00000426246 RBM27Q9P2N5 1060 aaKnown RBP16.48■□□□□ 0.23
USP42-203ENST00000426246 CASC1Q6TDU7 716 aa16.47■□□□□ 0.23
USP42-203ENST00000426246 GDPD2Q9HCC8 539 aa16.47■□□□□ 0.23
USP42-203ENST00000426246 NCAPD2Q15021 1401 aa16.47■□□□□ 0.23
USP42-203ENST00000426246 PTMAP06454 111 aaKnown RBP16.47■□□□□ 0.23
USP42-203ENST00000426246 SMC5Q8IY18 1101 aa16.47■□□□□ 0.23
USP42-203ENST00000426246 ATF3P18847 181 aa16.47■□□□□ 0.23
USP42-203ENST00000426246 NEK4P51957 841 aa16.47■□□□□ 0.23
USP42-203ENST00000426246 OS9Q13438 667 aaPredicted RBP16.47■□□□□ 0.23
USP42-203ENST00000426246 FAM43AQ8N2R8 423 aa16.47■□□□□ 0.23
USP42-203ENST00000426246 IP6K1Q92551 441 aa16.47■□□□□ 0.23
USP42-203ENST00000426246 COL18A1P39060 1754 aa16.47■□□□□ 0.23
USP42-203ENST00000426246 ZGPATQ8N5A5 531 aaKnown RBP16.46■□□□□ 0.23
USP42-203ENST00000426246 DDX17Q92841 729 aaKnown RBP16.46■□□□□ 0.23
USP42-203ENST00000426246 LMO7Q8WWI1 1683 aa16.46■□□□□ 0.23
USP42-203ENST00000426246 ZBTB7BO15156 539 aaPredicted RBP16.46■□□□□ 0.23
USP42-203ENST00000426246 GAS2L3Q86XJ1 694 aa16.46■□□□□ 0.23
USP42-203ENST00000426246 MSH6P52701 1360 aa16.46■□□□□ 0.23
USP42-203ENST00000426246 K7ELQ4 463 aaPredicted RBP16.46■□□□□ 0.23
USP42-203ENST00000426246 CDC45O75419 566 aa16.46■□□□□ 0.23
USP42-203ENST00000426246 CADPS2Q86UW7 1296 aa16.46■□□□□ 0.23
USP42-203ENST00000426246 KCNH5Q8NCM2 988 aa16.46■□□□□ 0.23
USP42-203ENST00000426246 IFT57Q9NWB7 429 aa16.46■□□□□ 0.23
USP42-203ENST00000426246 GCP02774 474 aa16.45■□□□□ 0.22
USP42-203ENST00000426246 HDAC1Q13547 482 aaPredicted RBP16.45■□□□□ 0.22
USP42-203ENST00000426246 CRB1P82279 1406 aa16.45■□□□□ 0.22
USP42-203ENST00000426246 ANXA1P04083 346 aa16.45■□□□□ 0.22
USP42-203ENST00000426246 ARHGEF25Q86VW2 580 aa16.45■□□□□ 0.22
USP42-203ENST00000426246 MRPL50Q8N5N7 158 aaKnown RBP16.45■□□□□ 0.22
USP42-203ENST00000426246 MTHFSDQ2M296 383 aaKnown RBP16.44■□□□□ 0.22
USP42-203ENST00000426246 SIRT2Q8IXJ6 389 aa16.44■□□□□ 0.22
USP42-203ENST00000426246 G2E3Q7L622 706 aa16.44■□□□□ 0.22
USP42-203ENST00000426246 CFAP44Q96MT7 982 aa16.44■□□□□ 0.22
USP42-203ENST00000426246 API5Q9BZZ5 524 aaKnown RBP16.43■□□□□ 0.22
USP42-203ENST00000426246 RBM10P98175 930 aaKnown RBP16.43■□□□□ 0.22
USP42-203ENST00000426246 DNTTIP2Q5QJE6 756 aaKnown RBP16.43■□□□□ 0.22
USP42-203ENST00000426246 MRE11P49959 708 aa16.43■□□□□ 0.22
USP42-203ENST00000426246 LMOD3Q0VAK6 560 aa16.43■□□□□ 0.22
USP42-203ENST00000426246 STK31Q9BXU1 1019 aa16.43■□□□□ 0.22
USP42-203ENST00000426246 TNS3Q68CZ2 1445 aa16.42■□□□□ 0.22
USP42-203ENST00000426246 NASPP49321 788 aaPredicted RBP16.42■□□□□ 0.22
USP42-203ENST00000426246 MSNP26038 577 aaKnown RBP16.41■□□□□ 0.22
USP42-203ENST00000426246 NBPF6Q5VWK0 638 aa16.41■□□□□ 0.22
USP42-203ENST00000426246 BRINP3Q76B58 766 aa16.41■□□□□ 0.22
USP42-203ENST00000426246 NBPF4Q96M43 638 aa16.41■□□□□ 0.22
USP42-203ENST00000426246 NUTM1Q86Y26 1132 aa16.4■□□□□ 0.22
USP42-203ENST00000426246 GCC1Q96CN9 775 aa16.4■□□□□ 0.22
USP42-203ENST00000426246 AXIN2Q9Y2T1 843 aa16.4■□□□□ 0.22
USP42-203ENST00000426246 GSPT1P15170 499 aaKnown RBP16.4■□□□□ 0.22
USP42-203ENST00000426246 SDSP20132 328 aa16.4■□□□□ 0.22
USP42-203ENST00000426246 VSIG10Q8N0Z9 540 aa16.4■□□□□ 0.22
USP42-203ENST00000426246 VIRMAQ69YN4 1812 aaKnown RBP16.4■□□□□ 0.22
USP42-203ENST00000426246 FAM208AQ9UK61 1670 aaKnown RBP16.39■□□□□ 0.21
USP42-203ENST00000426246 NHSL1Q5SYE7 1610 aa16.39■□□□□ 0.21
USP42-203ENST00000426246 NPHP3Q7Z494 1330 aa16.39■□□□□ 0.21
USP42-203ENST00000426246 ABCA3Q99758 1704 aa16.39■□□□□ 0.21
USP42-203ENST00000426246 ESPNB1AK53 854 aa16.39■□□□□ 0.21
USP42-203ENST00000426246 BRPF1P55201 1214 aaPredicted RBP16.39■□□□□ 0.21
USP42-203ENST00000426246 CHL1O00533 1208 aa16.39■□□□□ 0.21
USP42-203ENST00000426246 BMP2KLQ5H9B9 411 aa16.39■□□□□ 0.21
USP42-203ENST00000426246 ST18O60284 1047 aa16.38■□□□□ 0.21
USP42-203ENST00000426246 CHMP4BQ9H444 224 aaKnown RBP16.38■□□□□ 0.21
USP42-203ENST00000426246 SPATA31A3Q5VYP0 1347 aa16.38■□□□□ 0.21
USP42-203ENST00000426246 ABCC6O95255 1503 aa16.38■□□□□ 0.21
USP42-203ENST00000426246 PLEKHM2Q8IWE5 1019 aa16.38■□□□□ 0.21
USP42-203ENST00000426246 KCNJ4P48050 445 aa16.37■□□□□ 0.21
USP42-203ENST00000426246 ALDH1L2Q3SY69 923 aa16.37■□□□□ 0.21
USP42-203ENST00000426246 INTS3Q68E01 1043 aaKnown RBP16.37■□□□□ 0.21
USP42-203ENST00000426246 AAMPQ13685 434 aa16.37■□□□□ 0.21
USP42-203ENST00000426246 SYCE3A1L190 88 aa16.36■□□□□ 0.21
USP42-203ENST00000426246 BAG4O95429 457 aaKnown RBP16.36■□□□□ 0.21
USP42-203ENST00000426246 HSP90AA2PQ14568 343 aaPredicted RBP16.36■□□□□ 0.21
USP42-203ENST00000426246 LRRC59Q96AG4 307 aaKnown RBP16.36■□□□□ 0.21
USP42-203ENST00000426246 ADAMTS7Q9UKP4 1686 aa16.35■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms