RNA–Protein interactions for RNA: ENST00000424265.5

USP54-205, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 5,201 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-205ENST00000424265 CCDC30Q5VVM6 783 aa11.92□□□□□ -0.5
USP54-205ENST00000424265 CFAP44Q96MT7 982 aa11.92□□□□□ -0.5
USP54-205ENST00000424265 HMMRO75330 724 aa11.92□□□□□ -0.5
USP54-205ENST00000424265 GTF2A1P52655 376 aaPredicted RBP11.92□□□□□ -0.5
USP54-205ENST00000424265 NASPP49321 788 aaPredicted RBP11.91□□□□□ -0.5
USP54-205ENST00000424265 IFNL2Q8IZJ0 200 aa11.91□□□□□ -0.5
USP54-205ENST00000424265 ZSCAN20P17040 1043 aaPredicted RBP11.91□□□□□ -0.5
USP54-205ENST00000424265 NEXNQ0ZGT2 675 aa11.91□□□□□ -0.5
USP54-205ENST00000424265 EIF4A2Q14240 407 aaKnown RBP11.91□□□□□ -0.5
USP54-205ENST00000424265 USP31Q70CQ4 1352 aa11.91□□□□□ -0.5
USP54-205ENST00000424265 PTPRUQ92729 1446 aa11.91□□□□□ -0.5
USP54-205ENST00000424265 IFT172Q9UG01 1749 aa11.91□□□□□ -0.5
USP54-205ENST00000424265 C1orf167Q5SNV9 1468 aa11.91□□□□□ -0.5
USP54-205ENST00000424265 ADAMTS2O95450 1211 aa11.9□□□□□ -0.5
USP54-205ENST00000424265 EXOC5O00471 708 aa11.9□□□□□ -0.51
USP54-205ENST00000424265 IRX5P78411 483 aaPredicted RBP11.9□□□□□ -0.51
USP54-205ENST00000424265 GBP4Q96PP9 640 aa11.9□□□□□ -0.51
USP54-205ENST00000424265 MCCP23508 829 aa11.89□□□□□ -0.51
USP54-205ENST00000424265 RWDD1Q9H446 243 aaPredicted RBP11.89□□□□□ -0.51
USP54-205ENST00000424265 HSP90AB2PQ58FF8 381 aa11.89□□□□□ -0.51
USP54-205ENST00000424265 HMGN5P82970 282 aaKnown RBP11.89□□□□□ -0.51
USP54-205ENST00000424265 ITPRIPQ8IWB1 547 aa11.89□□□□□ -0.51
USP54-205ENST00000424265 ZNF142P52746 1687 aaPredicted RBP11.89□□□□□ -0.51
USP54-205ENST00000424265 KIAA2012Q0VF49 1180 aa11.89□□□□□ -0.51
USP54-205ENST00000424265 SKOR2Q2VWA4 1001 aaPredicted RBP11.89□□□□□ -0.51
USP54-205ENST00000424265 GOLGA6L1Q8N7Z2 621 aa11.89□□□□□ -0.51
USP54-205ENST00000424265 CPSF1Q10570 1443 aaKnown RBP11.89□□□□□ -0.51
USP54-205ENST00000424265 POLR1AO95602 1720 aaPredicted RBP11.88□□□□□ -0.51
USP54-205ENST00000424265 SPDYE4A6NLX3 237 aa11.88□□□□□ -0.51
USP54-205ENST00000424265 PHF14O94880 888 aa11.88□□□□□ -0.51
USP54-205ENST00000424265 PDCL2Q8N4E4 241 aa11.88□□□□□ -0.51
USP54-205ENST00000424265 RRP1P56182 461 aaKnown RBP11.88□□□□□ -0.51
USP54-205ENST00000424265 BRINP3Q76B58 766 aa11.88□□□□□ -0.51
USP54-205ENST00000424265 DHX30Q7L2E3 1194 aaKnown RBP eCLIP11.88□□□□□ -0.51
USP54-205ENST00000424265 TNS3Q68CZ2 1445 aa11.88□□□□□ -0.51
USP54-205ENST00000424265 SOS1Q07889 1333 aaPredicted RBP11.88□□□□□ -0.51
USP54-205ENST00000424265 GPATCH11Q8N954 259 aa11.88□□□□□ -0.51
USP54-205ENST00000424265 ZNF526Q8TF50 670 aaPredicted RBP11.88□□□□□ -0.51
USP54-205ENST00000424265 ARHGEF28Q8N1W1 1705 aaKnown RBP11.88□□□□□ -0.51
USP54-205ENST00000424265 TAF7Q15545 349 aaPredicted RBP11.88□□□□□ -0.51
USP54-205ENST00000424265 CDK12Q9NYV4 1490 aaPredicted RBP11.88□□□□□ -0.51
USP54-205ENST00000424265 SYTL4Q96C24 671 aaPredicted RBP11.87□□□□□ -0.51
USP54-205ENST00000424265 BABAM1Q9NWV8 329 aa11.87□□□□□ -0.51
USP54-205ENST00000424265 IGSF3O75054 1194 aa11.87□□□□□ -0.51
USP54-205ENST00000424265 MCM4P33991 863 aa11.87□□□□□ -0.51
USP54-205ENST00000424265 DDX19BQ9UMR2 479 aa11.87□□□□□ -0.51
USP54-205ENST00000424265 SPATA31A3Q5VYP0 1347 aa11.87□□□□□ -0.51
USP54-205ENST00000424265 AKAP4Q5JQC9 854 aa11.87□□□□□ -0.51
USP54-205ENST00000424265 IL2RBP14784 551 aa11.87□□□□□ -0.51
USP54-205ENST00000424265 ZRANB1Q9UGI0 708 aa11.87□□□□□ -0.51
USP54-205ENST00000424265 KCNG1Q9UIX4 513 aa11.87□□□□□ -0.51
USP54-205ENST00000424265 TWISTNBQ3B726 338 aaPredicted RBP11.86□□□□□ -0.51
USP54-205ENST00000424265 ZNF592Q92610 1267 aa11.86□□□□□ -0.51
USP54-205ENST00000424265 IL13P35225 146 aa11.86□□□□□ -0.51
USP54-205ENST00000424265 ZBTB9Q96C00 473 aa11.86□□□□□ -0.51
USP54-205ENST00000424265 SLFN5Q08AF3 891 aa11.86□□□□□ -0.51
USP54-205ENST00000424265 CCDC184Q52MB2 194 aa11.86□□□□□ -0.51
USP54-205ENST00000424265 KNDC1Q76NI1 1749 aa11.86□□□□□ -0.51
USP54-205ENST00000424265 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP11.86□□□□□ -0.51
USP54-205ENST00000424265 TEX13AQ9BXU3 409 aaPredicted RBP11.86□□□□□ -0.51
USP54-205ENST00000424265 BTBD11A6QL63 1104 aa11.85□□□□□ -0.51
USP54-205ENST00000424265 ZCRB1Q8TBF4 217 aaKnown RBP11.85□□□□□ -0.51
USP54-205ENST00000424265 DDX54Q8TDD1 881 aaKnown RBP11.85□□□□□ -0.51
USP54-205ENST00000424265 ITSN1Q15811 1721 aa11.85□□□□□ -0.51
USP54-205ENST00000424265 CHRNA2Q15822 529 aa11.85□□□□□ -0.51
USP54-205ENST00000424265 CASC1Q6TDU7 716 aa11.85□□□□□ -0.51
USP54-205ENST00000424265 BLMP54132 1417 aaPredicted RBP11.85□□□□□ -0.51
USP54-205ENST00000424265 CHMP4CQ96CF2 233 aa11.85□□□□□ -0.51
USP54-205ENST00000424265 TMOD3Q9NYL9 352 aa11.85□□□□□ -0.51
USP54-205ENST00000424265 ERBB4Q15303 1308 aa11.85□□□□□ -0.51
USP54-205ENST00000424265 ERICH4A6NGS2 130 aa11.85□□□□□ -0.51
USP54-205ENST00000424265 FSD2A1L4K1 749 aa11.84□□□□□ -0.51
USP54-205ENST00000424265 DZIP1LQ8IYY4 767 aaKnown RBP11.84□□□□□ -0.51
USP54-205ENST00000424265 MYCBPQ99417 103 aaPredicted RBP11.84□□□□□ -0.51
USP54-205ENST00000424265 PCDH11XQ9BZA7 1347 aa11.84□□□□□ -0.51
USP54-205ENST00000424265 PCDH11YQ9BZA8 1340 aa11.84□□□□□ -0.51
USP54-205ENST00000424265 ALDH1L2Q3SY69 923 aa11.84□□□□□ -0.51
USP54-205ENST00000424265 MYO5BQ9ULV0 1848 aa11.84□□□□□ -0.51
USP54-205ENST00000424265 CERKQ8TCT0 537 aa11.84□□□□□ -0.51
USP54-205ENST00000424265 PSMD1Q99460 953 aa11.84□□□□□ -0.51
USP54-205ENST00000424265 CHMP5Q9NZZ3 219 aa11.84□□□□□ -0.51
USP54-205ENST00000424265 ZNF330Q9Y3S2 320 aaPredicted RBP11.84□□□□□ -0.51
USP54-205ENST00000424265 GOLIM4O00461 696 aa11.84□□□□□ -0.51
USP54-205ENST00000424265 ARHGEF25Q86VW2 580 aa11.84□□□□□ -0.51
USP54-205ENST00000424265 TRERF1Q96PN7 1200 aa11.84□□□□□ -0.51
USP54-205ENST00000424265 EYA1Q99502 592 aa11.84□□□□□ -0.51
USP54-205ENST00000424265 EIF2S2P20042 333 aaKnown RBP11.83□□□□□ -0.51
USP54-205ENST00000424265 PDE3AQ14432 1141 aa11.83□□□□□ -0.51
USP54-205ENST00000424265 CCDC39Q9UFE4 941 aa11.83□□□□□ -0.51
USP54-205ENST00000424265 EXOSC9Q06265 439 aaKnown RBP11.83□□□□□ -0.52
USP54-205ENST00000424265 SF3B2Q13435 895 aaKnown RBP11.83□□□□□ -0.52
USP54-205ENST00000424265 TMED8Q6PL24 325 aaPredicted RBP11.83□□□□□ -0.52
USP54-205ENST00000424265 MAP3K5Q99683 1374 aa11.83□□□□□ -0.52
USP54-205ENST00000424265 ADGRB2O60241 1585 aa11.83□□□□□ -0.52
USP54-205ENST00000424265 USP32Q8NFA0 1604 aa11.83□□□□□ -0.52
USP54-205ENST00000424265 GEMIN8Q9NWZ8 242 aaKnown RBP11.83□□□□□ -0.52
USP54-205ENST00000424265 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP11.83□□□□□ -0.52
USP54-205ENST00000424265 ELL2O00472 640 aaPredicted RBP11.82□□□□□ -0.52
USP54-205ENST00000424265 FKBP5Q13451 457 aaPredicted RBP11.82□□□□□ -0.52
USP54-205ENST00000424265 HDGFL1Q5TGJ6 251 aa11.82□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 11.5 ms