RNA–Protein interactions for RNA: ENST00000423058.6

SCN1A-204, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SCN1A, Length 8,191 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-204ENST00000423058 EPRSP07814 1512 aaKnown RBP7.98□□□□□ -1.13
SCN1A-204ENST00000423058 LARP1BQ659C4 914 aaKnown RBP7.98□□□□□ -1.13
SCN1A-204ENST00000423058 AACSQ86V21 672 aa7.98□□□□□ -1.13
SCN1A-204ENST00000423058 GBP3Q9H0R5 595 aa7.98□□□□□ -1.13
SCN1A-204ENST00000423058 SLC4A2P04920 1241 aa7.98□□□□□ -1.13
SCN1A-204ENST00000423058 NCBP1Q09161 790 aaKnown RBP7.98□□□□□ -1.13
SCN1A-204ENST00000423058 BICDL1Q6ZP65 573 aa7.98□□□□□ -1.13
SCN1A-204ENST00000423058 TRAF1Q13077 416 aa7.97□□□□□ -1.13
SCN1A-204ENST00000423058 RGS22Q8NE09 1264 aa7.97□□□□□ -1.13
SCN1A-204ENST00000423058 FIBPO43427 364 aa7.97□□□□□ -1.13
SCN1A-204ENST00000423058 PRKRIP1Q9H875 184 aaPredicted RBP7.97□□□□□ -1.13
SCN1A-204ENST00000423058 SLC5A1P13866 664 aa7.97□□□□□ -1.13
SCN1A-204ENST00000423058 STK3Q13188 491 aa7.97□□□□□ -1.13
SCN1A-204ENST00000423058 PYM1Q9BRP8 204 aaKnown RBP7.97□□□□□ -1.13
SCN1A-204ENST00000423058 RNF41Q9H4P4 317 aaPredicted RBP7.97□□□□□ -1.13
SCN1A-204ENST00000423058 RTEL1-TNFRSF6BF6WH68 1400 aa7.97□□□□□ -1.13
SCN1A-204ENST00000423058 AMPD3Q01432 767 aa7.97□□□□□ -1.13
SCN1A-204ENST00000423058 MAP3K12Q12852 859 aa7.97□□□□□ -1.13
SCN1A-204ENST00000423058 CTCFLQ8NI51 663 aaPredicted RBP7.97□□□□□ -1.13
SCN1A-204ENST00000423058 IDH1O75874 414 aaKnown RBP7.97□□□□□ -1.13
SCN1A-204ENST00000423058 TAF3Q5VWG9 929 aa7.97□□□□□ -1.13
SCN1A-204ENST00000423058 TTC12Q9H892 705 aaPredicted RBP7.97□□□□□ -1.13
SCN1A-204ENST00000423058 HLA-DOAP06340 250 aa7.96□□□□□ -1.13
SCN1A-204ENST00000423058 ST5P78524 1137 aa7.96□□□□□ -1.13
SCN1A-204ENST00000423058 USP37Q86T82 979 aa7.96□□□□□ -1.13
SCN1A-204ENST00000423058 CFAP65Q6ZU64 1925 aaKnown RBP7.96□□□□□ -1.13
SCN1A-204ENST00000423058 ZWINTO95229 277 aa7.96□□□□□ -1.13
SCN1A-204ENST00000423058 SPATA32Q96LK8 384 aa7.96□□□□□ -1.13
SCN1A-204ENST00000423058 SLC52A1Q9NWF4 448 aa7.96□□□□□ -1.13
SCN1A-204ENST00000423058 PRKAR2BP31323 418 aa7.96□□□□□ -1.14
SCN1A-204ENST00000423058 NOP2P46087 812 aaKnown RBP7.96□□□□□ -1.14
SCN1A-204ENST00000423058 LMAN1P49257 510 aa7.96□□□□□ -1.14
SCN1A-204ENST00000423058 ARHGAP29Q52LW3 1261 aa7.96□□□□□ -1.14
SCN1A-204ENST00000423058 SPTY2D1Q68D10 685 aaPredicted RBP7.96□□□□□ -1.14
SCN1A-204ENST00000423058 CTNNBL1Q8WYA6 563 aaPredicted RBP7.96□□□□□ -1.14
SCN1A-204ENST00000423058 PRAM1Q96QH2 718 aa7.96□□□□□ -1.14
SCN1A-204ENST00000423058 CDK19Q9BWU1 502 aa7.96□□□□□ -1.14
SCN1A-204ENST00000423058 BRD4O60885 1362 aaPredicted RBP7.96□□□□□ -1.14
SCN1A-204ENST00000423058 CCDC172P0C7W6 258 aa7.96□□□□□ -1.14
SCN1A-204ENST00000423058 VTI1AQ96AJ9 217 aa7.96□□□□□ -1.14
SCN1A-204ENST00000423058 NAPBQ9H115 298 aa7.96□□□□□ -1.14
SCN1A-204ENST00000423058 BAG3O95817 575 aa7.96□□□□□ -1.14
SCN1A-204ENST00000423058 SPC24Q8NBT2 197 aa7.96□□□□□ -1.14
SCN1A-204ENST00000423058 ACTN2P35609 894 aa7.96□□□□□ -1.14
SCN1A-204ENST00000423058 CRACR2AQ9BSW2 395 aa7.96□□□□□ -1.14
SCN1A-204ENST00000423058 CABP5Q9NP86 173 aa7.96□□□□□ -1.14
SCN1A-204ENST00000423058 PPP6R1Q9UPN7 881 aa7.96□□□□□ -1.14
SCN1A-204ENST00000423058 HMGB1P09429 215 aaKnown RBP7.95□□□□□ -1.14
SCN1A-204ENST00000423058 RAB3IL1Q8TBN0 382 aa7.95□□□□□ -1.14
SCN1A-204ENST00000423058 DAPK1P53355 1430 aa7.95□□□□□ -1.14
SCN1A-204ENST00000423058 KIF5BP33176 963 aa7.95□□□□□ -1.14
SCN1A-204ENST00000423058 FAM193AP78312 1265 aa7.95□□□□□ -1.14
SCN1A-204ENST00000423058 CATIPQ7Z7H3 387 aa7.95□□□□□ -1.14
SCN1A-204ENST00000423058 UPF3BQ9BZI7 483 aaKnown RBP7.95□□□□□ -1.14
SCN1A-204ENST00000423058 LRRC27Q9C0I9 530 aa7.95□□□□□ -1.14
SCN1A-204ENST00000423058 GNAT3A8MTJ3 354 aa7.95□□□□□ -1.14
SCN1A-204ENST00000423058 USO1O60763 962 aaKnown RBP7.95□□□□□ -1.14
SCN1A-204ENST00000423058 RAB11FIP3O75154 756 aa7.95□□□□□ -1.14
SCN1A-204ENST00000423058 IFFO1Q0D2I5 559 aa7.95□□□□□ -1.14
SCN1A-204ENST00000423058 SULT6B1Q6IMI4 303 aa7.95□□□□□ -1.14
SCN1A-204ENST00000423058 CALML4Q96GE6 196 aa7.95□□□□□ -1.14
SCN1A-204ENST00000423058 UBA5Q9GZZ9 404 aa7.95□□□□□ -1.14
SCN1A-204ENST00000423058 CCDC83Q8IWF9 413 aa7.95□□□□□ -1.14
SCN1A-204ENST00000423058 PSMD1Q99460 953 aa7.95□□□□□ -1.14
SCN1A-204ENST00000423058 PLVAPQ9BX97 442 aa7.95□□□□□ -1.14
SCN1A-204ENST00000423058 GOPCQ9HD26 462 aa7.95□□□□□ -1.14
SCN1A-204ENST00000423058 PDRG1Q9NUG6 133 aa7.95□□□□□ -1.14
SCN1A-204ENST00000423058 SMC1AQ14683 1233 aaKnown RBP7.95□□□□□ -1.14
SCN1A-204ENST00000423058 CCDC178Q5BJE1 867 aa7.95□□□□□ -1.14
SCN1A-204ENST00000423058 SYCP3Q8IZU3 236 aa7.95□□□□□ -1.14
SCN1A-204ENST00000423058 BCL11BQ9C0K0 894 aaPredicted RBP7.95□□□□□ -1.14
SCN1A-204ENST00000423058 IKBKGQ9Y6K9 419 aa7.95□□□□□ -1.14
SCN1A-204ENST00000423058 NAA15Q9BXJ9 866 aaKnown RBP7.94□□□□□ -1.14
SCN1A-204ENST00000423058 FSD2A1L4K1 749 aa7.94□□□□□ -1.14
SCN1A-204ENST00000423058 MINDY4BA8MYZ0 360 aa7.94□□□□□ -1.14
SCN1A-204ENST00000423058 LUZP1Q86V48 1076 aa7.94□□□□□ -1.14
SCN1A-204ENST00000423058 CCDC82Q8N4S0 544 aa7.94□□□□□ -1.14
SCN1A-204ENST00000423058 CCDC113Q9H0I3 377 aa7.94□□□□□ -1.14
SCN1A-204ENST00000423058 SLTMQ9NWH9 1034 aaKnown RBP eCLIP7.94□□□□□ -1.14
SCN1A-204ENST00000423058 KIF2AO00139 706 aaPredicted RBP7.94□□□□□ -1.14
SCN1A-204ENST00000423058 PRPF40AO75400 957 aaKnown RBP7.94□□□□□ -1.14
SCN1A-204ENST00000423058 IFIT5Q13325 482 aaKnown RBP7.94□□□□□ -1.14
SCN1A-204ENST00000423058 RNF214Q8ND24 703 aa7.94□□□□□ -1.14
SCN1A-204ENST00000423058 PANK1Q8TE04 598 aa7.94□□□□□ -1.14
SCN1A-204ENST00000423058 BBXQ8WY36 941 aaPredicted RBP7.94□□□□□ -1.14
SCN1A-204ENST00000423058 ANKRD50Q9ULJ7 1429 aa7.94□□□□□ -1.14
SCN1A-204ENST00000423058 AMOTQ4VCS5 1084 aa7.94□□□□□ -1.14
SCN1A-204ENST00000423058 FAM114A1Q8IWE2 563 aa7.94□□□□□ -1.14
SCN1A-204ENST00000423058 NOL12Q9UGY1 213 aaKnown RBP eCLIP7.94□□□□□ -1.14
SCN1A-204ENST00000423058 V9GYY5 206 aaPredicted RBP7.94□□□□□ -1.14
SCN1A-204ENST00000423058 SRGAP3O43295 1099 aa7.94□□□□□ -1.14
SCN1A-204ENST00000423058 GSTO1P78417 241 aa7.94□□□□□ -1.14
SCN1A-204ENST00000423058 CCDC174Q6PII3 467 aa7.94□□□□□ -1.14
SCN1A-204ENST00000423058 NOB1Q9ULX3 412 aaKnown RBP7.94□□□□□ -1.14
SCN1A-204ENST00000423058 IFI16Q16666 785 aaKnown RBP7.94□□□□□ -1.14
SCN1A-204ENST00000423058 CCDC117Q8IWD4 279 aaPredicted RBP7.94□□□□□ -1.14
SCN1A-204ENST00000423058 FAM177A1Q8N128 213 aaPredicted RBP7.94□□□□□ -1.14
SCN1A-204ENST00000423058 KIF5CO60282 957 aa7.94□□□□□ -1.14
SCN1A-204ENST00000423058 APBB1IPQ7Z5R6 666 aaPredicted RBP7.94□□□□□ -1.14
SCN1A-204ENST00000423058 SAMM50Q9Y512 469 aa7.94□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 56.2 ms