RNA–Protein interactions for RNA: ENST00000422770.5

HERC3-204, Transcript of HECT and RLD domain containing E3 ubiquitin protein ligase 3, humanhuman

TSL 4

Gene HERC3, Length 579 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERC3-204ENST00000422770 ZNF827Q17R98 1081 aa12.85□□□□□ -0.35
HERC3-204ENST00000422770 NFATC2IPQ8NCF5 419 aa12.85□□□□□ -0.35
HERC3-204ENST00000422770 PRKRIP1Q9H875 184 aaPredicted RBP12.85□□□□□ -0.35
HERC3-204ENST00000422770 TFCP2L1Q9NZI6 479 aa12.85□□□□□ -0.35
HERC3-204ENST00000422770 MAPK8IP3Q9UPT6 1336 aa12.85□□□□□ -0.35
HERC3-204ENST00000422770 GNAT3A8MTJ3 354 aa12.84□□□□□ -0.35
HERC3-204ENST00000422770 RNMTO43148 476 aaKnown RBP12.84□□□□□ -0.35
HERC3-204ENST00000422770 FCHSD2O94868 740 aa12.84□□□□□ -0.35
HERC3-204ENST00000422770 ATP6V1AP38606 617 aa12.84□□□□□ -0.35
HERC3-204ENST00000422770 WDR43Q15061 677 aaKnown RBP eCLIP12.84□□□□□ -0.35
HERC3-204ENST00000422770 PHACTR3Q96KR7 559 aa12.84□□□□□ -0.35
HERC3-204ENST00000422770 LGR6Q9HBX8 967 aa12.84□□□□□ -0.35
HERC3-204ENST00000422770 ADAMTS7Q9UKP4 1686 aa12.83□□□□□ -0.35
HERC3-204ENST00000422770 LOC102724428A0A0B4J2F2 783 aa12.83□□□□□ -0.36
HERC3-204ENST00000422770 PTCD1O75127 700 aaKnown RBP12.83□□□□□ -0.36
HERC3-204ENST00000422770 ZBTB7AO95365 584 aa12.83□□□□□ -0.36
HERC3-204ENST00000422770 SIK1P57059 783 aa12.83□□□□□ -0.36
HERC3-204ENST00000422770 TEFQ10587 303 aa12.83□□□□□ -0.36
HERC3-204ENST00000422770 RTF1Q92541 710 aaKnown RBP12.83□□□□□ -0.36
HERC3-204ENST00000422770 AK7Q96M32 723 aa12.83□□□□□ -0.36
HERC3-204ENST00000422770 SLC52A2Q9HAB3 445 aa12.83□□□□□ -0.36
HERC3-204ENST00000422770 ATG3Q9NT62 314 aa12.83□□□□□ -0.36
HERC3-204ENST00000422770 SIPA1L3O60292 1781 aaPredicted RBP12.83□□□□□ -0.36
HERC3-204ENST00000422770 UBR3Q6ZT12 1888 aa12.82□□□□□ -0.36
HERC3-204ENST00000422770 COL5A3P25940 1745 aaPredicted RBP12.82□□□□□ -0.36
HERC3-204ENST00000422770 PDGFDQ9GZP0 370 aaPredicted RBP12.82□□□□□ -0.36
HERC3-204ENST00000422770 PNNQ9H307 717 aaKnown RBP12.82□□□□□ -0.36
HERC3-204ENST00000422770 PPP1R1BQ9UD71 204 aaPredicted RBP12.82□□□□□ -0.36
HERC3-204ENST00000422770 MRC1P22897 1456 aa12.82□□□□□ -0.36
HERC3-204ENST00000422770 PHF14O94880 888 aa12.81□□□□□ -0.36
HERC3-204ENST00000422770 SPON1Q9HCB6 807 aa12.81□□□□□ -0.36
HERC3-204ENST00000422770 ATF5Q9Y2D1 282 aaPredicted RBP12.81□□□□□ -0.36
HERC3-204ENST00000422770 TJP1Q07157 1748 aa12.81□□□□□ -0.36
HERC3-204ENST00000422770 ZNF831Q5JPB2 1677 aa12.8□□□□□ -0.36
HERC3-204ENST00000422770 UBR2Q8IWV8 1755 aa12.8□□□□□ -0.36
HERC3-204ENST00000422770 HMGB2P26583 209 aaKnown RBP12.8□□□□□ -0.36
HERC3-204ENST00000422770 SLC39A6Q13433 755 aa12.8□□□□□ -0.36
HERC3-204ENST00000422770 CCDC146Q8IYE0 955 aa12.8□□□□□ -0.36
HERC3-204ENST00000422770 TTC5Q8N0Z6 440 aa12.8□□□□□ -0.36
HERC3-204ENST00000422770 MIER1Q8N108 512 aa12.8□□□□□ -0.36
HERC3-204ENST00000422770 AKT1S1Q96B36 256 aa12.8□□□□□ -0.36
HERC3-204ENST00000422770 MCM10Q7L590 875 aa12.79□□□□□ -0.36
HERC3-204ENST00000422770 LINC00116Q8NCU8 138 aa12.79□□□□□ -0.36
HERC3-204ENST00000422770 GNPATO15228 680 aa12.78□□□□□ -0.36
HERC3-204ENST00000422770 ITPK1Q13572 414 aa12.78□□□□□ -0.36
HERC3-204ENST00000422770 DCTN1Q14203 1278 aa12.78□□□□□ -0.36
HERC3-204ENST00000422770 IL17REQ8NFR9 667 aa12.78□□□□□ -0.36
HERC3-204ENST00000422770 PNPLA7Q6ZV29 1317 aa12.78□□□□□ -0.36
HERC3-204ENST00000422770 NEUROD2Q15784 382 aa12.77□□□□□ -0.37
HERC3-204ENST00000422770 KLHL34Q8N239 644 aa12.77□□□□□ -0.37
HERC3-204ENST00000422770 NFE2L2Q16236 605 aa12.76□□□□□ -0.37
HERC3-204ENST00000422770 MSL1Q68DK7 614 aa12.76□□□□□ -0.37
HERC3-204ENST00000422770 SMIM5Q71RC9 77 aa12.76□□□□□ -0.37
HERC3-204ENST00000422770 MTFR1LQ9H019 292 aa12.76□□□□□ -0.37
HERC3-204ENST00000422770 KCPQ6ZWJ8 1503 aa12.76□□□□□ -0.37
HERC3-204ENST00000422770 C4AP0C0L4 1744 aa12.76□□□□□ -0.37
HERC3-204ENST00000422770 MYH14Q7Z406 1995 aaKnown RBP12.76□□□□□ -0.37
HERC3-204ENST00000422770 BTBD11A6QL63 1104 aa12.75□□□□□ -0.37
HERC3-204ENST00000422770 COL23A1Q86Y22 540 aaPredicted RBP12.75□□□□□ -0.37
HERC3-204ENST00000422770 SLC4A9Q96Q91 983 aa12.75□□□□□ -0.37
HERC3-204ENST00000422770 CICQ96RK0 1608 aaPredicted RBP12.75□□□□□ -0.37
HERC3-204ENST00000422770 PLEKHF1Q96S99 279 aa12.75□□□□□ -0.37
HERC3-204ENST00000422770 RRP7AQ9Y3A4 280 aaKnown RBP12.75□□□□□ -0.37
HERC3-204ENST00000422770 CEMIPQ8WUJ3 1361 aa12.74□□□□□ -0.37
HERC3-204ENST00000422770 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP12.74□□□□□ -0.37
HERC3-204ENST00000422770 FLAD1Q8NFF5 587 aa12.74□□□□□ -0.37
HERC3-204ENST00000422770 MRS2Q9HD23 443 aa12.74□□□□□ -0.37
HERC3-204ENST00000422770 ADAMTS8Q9UP79 889 aa12.74□□□□□ -0.37
HERC3-204ENST00000422770 RTCBQ9Y3I0 505 aaKnown RBP12.74□□□□□ -0.37
HERC3-204ENST00000422770 KDM3BQ7LBC6 1761 aa12.74□□□□□ -0.37
HERC3-204ENST00000422770 HTATSF1O43719 755 aaKnown RBP12.73□□□□□ -0.37
HERC3-204ENST00000422770 POLD1P28340 1107 aa12.73□□□□□ -0.37
HERC3-204ENST00000422770 CRKLP46109 303 aaKnown RBP12.73□□□□□ -0.37
HERC3-204ENST00000422770 RIPK4P57078 832 aa12.73□□□□□ -0.37
HERC3-204ENST00000422770 ZNF790Q6PG37 636 aa12.73□□□□□ -0.37
HERC3-204ENST00000422770 DNAJC10Q8IXB1 793 aa12.73□□□□□ -0.37
HERC3-204ENST00000422770 RUNDC1Q96C34 613 aa12.73□□□□□ -0.37
HERC3-204ENST00000422770 THUMPD2Q9BTF0 503 aaKnown RBP12.73□□□□□ -0.37
HERC3-204ENST00000422770 SSFA2P28290 1259 aa12.72□□□□□ -0.37
HERC3-204ENST00000422770 CCDC184Q52MB2 194 aa12.72□□□□□ -0.37
HERC3-204ENST00000422770 SLC16A10Q8TF71 515 aa12.72□□□□□ -0.37
HERC3-204ENST00000422770 ZNF330Q9Y3S2 320 aaPredicted RBP12.72□□□□□ -0.37
HERC3-204ENST00000422770 LAMB4A4D0S4 1761 aa12.71□□□□□ -0.37
HERC3-204ENST00000422770 CNTNAP4Q9C0A0 1308 aa12.71□□□□□ -0.37
HERC3-204ENST00000422770 KCNQ3O43525 872 aa12.71□□□□□ -0.37
HERC3-204ENST00000422770 TMPOP42166 694 aaKnown RBP12.71□□□□□ -0.37
HERC3-204ENST00000422770 LMOD3Q0VAK6 560 aa12.71□□□□□ -0.37
HERC3-204ENST00000422770 AMIGO3Q86WK7 504 aa12.71□□□□□ -0.37
HERC3-204ENST00000422770 ZNF496Q96IT1 587 aaPredicted RBP12.71□□□□□ -0.37
HERC3-204ENST00000422770 FMNL2Q96PY5 1086 aa12.71□□□□□ -0.37
HERC3-204ENST00000422770 CCDC87Q9NVE4 849 aa12.71□□□□□ -0.37
HERC3-204ENST00000422770 MIS18AQ9NYP9 233 aa12.71□□□□□ -0.37
HERC3-204ENST00000422770 HEG1Q9ULI3 1381 aa12.7□□□□□ -0.38
HERC3-204ENST00000422770 SENP3-EIF4A1A0A087X0R7 540 aa12.7□□□□□ -0.38
HERC3-204ENST00000422770 RFC4P35249 363 aa12.7□□□□□ -0.38
HERC3-204ENST00000422770 TAF7Q15545 349 aaPredicted RBP12.7□□□□□ -0.38
HERC3-204ENST00000422770 TRAPPC3LQ5T215 181 aa12.7□□□□□ -0.38
HERC3-204ENST00000422770 LAS1LQ9Y4W2 734 aaKnown RBP12.7□□□□□ -0.38
HERC3-204ENST00000422770 COL24A1Q17RW2 1714 aa12.7□□□□□ -0.38
HERC3-204ENST00000422770 RPS6KA4O75676 772 aa12.69□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 12.1 ms