RNA–Protein interactions for RNA: ENST00000421999.7

CMSS1-201, Transcript of cms1 ribosomal small subunit homolog (yeast), humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CMSS1, Length 4,330 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CMSS1-201ENST00000421999 SAMD1Q6SPF0 538 aaPredicted RBP11.9□□□□□ -0.5
CMSS1-201ENST00000421999 PDZRN3Q9UPQ7 1066 aa11.9□□□□□ -0.5
CMSS1-201ENST00000421999 ANKARQ7Z5J8 1434 aa11.9□□□□□ -0.51
CMSS1-201ENST00000421999 MROH2AA6NES4 1674 aa11.9□□□□□ -0.51
CMSS1-201ENST00000421999 QRICH2Q9H0J4 1663 aa11.9□□□□□ -0.51
CMSS1-201ENST00000421999 CLSTN1O94985 981 aa11.9□□□□□ -0.51
CMSS1-201ENST00000421999 CCDC57Q2TAC2 916 aa11.9□□□□□ -0.51
CMSS1-201ENST00000421999 INSRP06213 1382 aa11.89□□□□□ -0.51
CMSS1-201ENST00000421999 VAMP4O75379 141 aa11.89□□□□□ -0.51
CMSS1-201ENST00000421999 PIP4K2AP48426 406 aaPredicted RBP11.89□□□□□ -0.51
CMSS1-201ENST00000421999 ERC2O15083 957 aa11.89□□□□□ -0.51
CMSS1-201ENST00000421999 RNMTO43148 476 aaKnown RBP11.89□□□□□ -0.51
CMSS1-201ENST00000421999 FAM161AQ3B820 660 aa11.89□□□□□ -0.51
CMSS1-201ENST00000421999 TNNQ9UQP3 1299 aa11.89□□□□□ -0.51
CMSS1-201ENST00000421999 SNRPA1P09661 255 aaKnown RBP11.89□□□□□ -0.51
CMSS1-201ENST00000421999 FER1L4A9Z1Z3 1794 aa11.89□□□□□ -0.51
CMSS1-201ENST00000421999 ADGRB1O14514 1584 aa11.88□□□□□ -0.51
CMSS1-201ENST00000421999 DCAF5Q96JK2 942 aa11.88□□□□□ -0.51
CMSS1-201ENST00000421999 ANO2Q9NQ90 1003 aa11.88□□□□□ -0.51
CMSS1-201ENST00000421999 REREQ9P2R6 1566 aa11.88□□□□□ -0.51
CMSS1-201ENST00000421999 LAMC1P11047 1609 aa11.88□□□□□ -0.51
CMSS1-201ENST00000421999 PI4KAP2A4QPH2 592 aa11.88□□□□□ -0.51
CMSS1-201ENST00000421999 PI4KAP1Q8N8J0 262 aa11.88□□□□□ -0.51
CMSS1-201ENST00000421999 CHPF2Q9P2E5 772 aa11.88□□□□□ -0.51
CMSS1-201ENST00000421999 ZNF652Q9Y2D9 606 aa11.88□□□□□ -0.51
CMSS1-201ENST00000421999 VPS53Q5VIR6 699 aa11.88□□□□□ -0.51
CMSS1-201ENST00000421999 FOXD4L1Q9NU39 408 aa11.88□□□□□ -0.51
CMSS1-201ENST00000421999 SRGAP3O43295 1099 aa11.87□□□□□ -0.51
CMSS1-201ENST00000421999 LARP1Q6PKG0 1096 aaKnown RBP11.87□□□□□ -0.51
CMSS1-201ENST00000421999 DNAAF4Q8WXU2 420 aa11.87□□□□□ -0.51
CMSS1-201ENST00000421999 ZBTB3Q9H5J0 574 aa11.87□□□□□ -0.51
CMSS1-201ENST00000421999 MYD88Q99836 296 aa11.87□□□□□ -0.51
CMSS1-201ENST00000421999 KIF13AQ9H1H9 1805 aa11.87□□□□□ -0.51
CMSS1-201ENST00000421999 PTCH1Q13635 1447 aa11.87□□□□□ -0.51
CMSS1-201ENST00000421999 DHX16O60231 1041 aaKnown RBP11.87□□□□□ -0.51
CMSS1-201ENST00000421999 ZKSCAN1P17029 563 aaPredicted RBP11.87□□□□□ -0.51
CMSS1-201ENST00000421999 AK7Q96M32 723 aa11.87□□□□□ -0.51
CMSS1-201ENST00000421999 HYPKQ9NX55 129 aa11.87□□□□□ -0.51
CMSS1-201ENST00000421999 PHF14O94880 888 aa11.87□□□□□ -0.51
CMSS1-201ENST00000421999 TRDNQ13061 729 aa11.87□□□□□ -0.51
CMSS1-201ENST00000421999 SKAP1Q86WV1 359 aa11.87□□□□□ -0.51
CMSS1-201ENST00000421999 PLEKHF1Q96S99 279 aa11.86□□□□□ -0.51
CMSS1-201ENST00000421999 DNAJC2Q99543 621 aaKnown RBP11.86□□□□□ -0.51
CMSS1-201ENST00000421999 CTDP1Q9Y5B0 961 aaPredicted RBP11.86□□□□□ -0.51
CMSS1-201ENST00000421999 SPATA31A3Q5VYP0 1347 aa11.86□□□□□ -0.51
CMSS1-201ENST00000421999 GPTP24298 496 aa11.86□□□□□ -0.51
CMSS1-201ENST00000421999 NCBP3Q53F19 620 aaKnown RBP11.86□□□□□ -0.51
CMSS1-201ENST00000421999 SYNE3Q6ZMZ3 975 aa11.86□□□□□ -0.51
CMSS1-201ENST00000421999 BLMP54132 1417 aaPredicted RBP11.86□□□□□ -0.51
CMSS1-201ENST00000421999 ST18O60284 1047 aa11.85□□□□□ -0.51
CMSS1-201ENST00000421999 PCDH11XQ9BZA7 1347 aa11.85□□□□□ -0.51
CMSS1-201ENST00000421999 PCDH11YQ9BZA8 1340 aa11.85□□□□□ -0.51
CMSS1-201ENST00000421999 MARCH6O60337 910 aa11.85□□□□□ -0.51
CMSS1-201ENST00000421999 AKAP17AQ02040 695 aaKnown RBP11.85□□□□□ -0.51
CMSS1-201ENST00000421999 MAP3K2Q9Y2U5 619 aa11.85□□□□□ -0.51
CMSS1-201ENST00000421999 PTPRCP08575 1304 aa11.85□□□□□ -0.51
CMSS1-201ENST00000421999 ATP5J2-PTCD1G3V325 749 aa11.85□□□□□ -0.51
CMSS1-201ENST00000421999 CHL1O00533 1208 aa11.85□□□□□ -0.51
CMSS1-201ENST00000421999 FAM98CQ17RN3 349 aaKnown RBP11.85□□□□□ -0.51
CMSS1-201ENST00000421999 IL17REQ8NFR9 667 aa11.85□□□□□ -0.51
CMSS1-201ENST00000421999 GCC1Q96CN9 775 aa11.85□□□□□ -0.51
CMSS1-201ENST00000421999 TBC1D2BQ9UPU7 963 aa11.85□□□□□ -0.51
CMSS1-201ENST00000421999 EXOC6BQ9Y2D4 811 aa11.85□□□□□ -0.51
CMSS1-201ENST00000421999 MRPL50Q8N5N7 158 aaKnown RBP11.85□□□□□ -0.51
CMSS1-201ENST00000421999 FSD1Q9BTV5 496 aa11.85□□□□□ -0.51
CMSS1-201ENST00000421999 DLC1Q96QB1 1528 aa11.84□□□□□ -0.51
CMSS1-201ENST00000421999 REC8O95072 547 aa11.84□□□□□ -0.51
CMSS1-201ENST00000421999 RASSF8Q8NHQ8 419 aa11.84□□□□□ -0.51
CMSS1-201ENST00000421999 CEP126Q9P2H0 1117 aa11.84□□□□□ -0.51
CMSS1-201ENST00000421999 PTMAP06454 111 aaKnown RBP11.84□□□□□ -0.51
CMSS1-201ENST00000421999 COPS6Q7L5N1 327 aa11.84□□□□□ -0.51
CMSS1-201ENST00000421999 RPAP2Q8IXW5 612 aaPredicted RBP11.84□□□□□ -0.51
CMSS1-201ENST00000421999 ZNF219Q9P2Y4 722 aaPredicted RBP11.84□□□□□ -0.51
CMSS1-201ENST00000421999 RLBP1P12271 317 aa11.84□□□□□ -0.51
CMSS1-201ENST00000421999 AXIN2Q9Y2T1 843 aa11.84□□□□□ -0.51
CMSS1-201ENST00000421999 IGSF1Q8N6C5 1336 aa11.83□□□□□ -0.51
CMSS1-201ENST00000421999 CPLX2Q6PUV4 134 aaKnown RBP11.83□□□□□ -0.52
CMSS1-201ENST00000421999 IL1RAPL2Q9NP60 686 aa11.83□□□□□ -0.52
CMSS1-201ENST00000421999 GNL3LQ9NVN8 582 aaKnown RBP11.83□□□□□ -0.52
CMSS1-201ENST00000421999 ERBB3P21860 1342 aa11.83□□□□□ -0.52
CMSS1-201ENST00000421999 PPLO60437 1756 aa11.83□□□□□ -0.52
CMSS1-201ENST00000421999 XAGE3Q8WTP9 111 aa11.83□□□□□ -0.52
CMSS1-201ENST00000421999 JARID2Q92833 1246 aaPredicted RBP11.83□□□□□ -0.52
CMSS1-201ENST00000421999 TRMT112Q9UI30 125 aaKnown RBP11.83□□□□□ -0.52
CMSS1-201ENST00000421999 NOP58Q9Y2X3 529 aaKnown RBP11.83□□□□□ -0.52
CMSS1-201ENST00000421999 CPSF1Q10570 1443 aaKnown RBP11.83□□□□□ -0.52
CMSS1-201ENST00000421999 C1orf167Q5SNV9 1468 aa11.83□□□□□ -0.52
CMSS1-201ENST00000421999 ZNF790Q6PG37 636 aa11.83□□□□□ -0.52
CMSS1-201ENST00000421999 MTMR7Q9Y216 660 aa11.83□□□□□ -0.52
CMSS1-201ENST00000421999 LRRFIP2Q9Y608 721 aaKnown RBP11.83□□□□□ -0.52
CMSS1-201ENST00000421999 CCDC158Q5M9N0 1113 aa11.82□□□□□ -0.52
CMSS1-201ENST00000421999 KIF3AQ9Y496 699 aa11.82□□□□□ -0.52
CMSS1-201ENST00000421999 TECPR2O15040 1411 aa11.82□□□□□ -0.52
CMSS1-201ENST00000421999 IGHMBP2P38935 993 aaKnown RBP11.82□□□□□ -0.52
CMSS1-201ENST00000421999 ANKRD13DQ6ZTN6 518 aa11.82□□□□□ -0.52
CMSS1-201ENST00000421999 TEX13AQ9BXU3 409 aaPredicted RBP11.82□□□□□ -0.52
CMSS1-201ENST00000421999 USP21Q9UK80 565 aa11.82□□□□□ -0.52
CMSS1-201ENST00000421999 A0A087WZG4 1122 aa11.82□□□□□ -0.52
CMSS1-201ENST00000421999 RFC4P35249 363 aa11.82□□□□□ -0.52
CMSS1-201ENST00000421999 PRKCSHP14314 528 aaPredicted RBP11.82□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms