RNA–Protein interactions for RNA: ENST00000418628.5

PTCD3-204, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 4

Gene PTCD3, Length 532 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-204ENST00000418628 COL24A1Q17RW2 1714 aa24.81■■□□□ 1.56
PTCD3-204ENST00000418628 GNAT3A8MTJ3 354 aa24.81■■□□□ 1.56
PTCD3-204ENST00000418628 LGR6Q9HBX8 967 aa24.81■■□□□ 1.56
PTCD3-204ENST00000418628 LRRC4BQ9NT99 713 aa24.81■■□□□ 1.56
PTCD3-204ENST00000418628 SLC27A3Q5K4L6 730 aa24.8■■□□□ 1.56
PTCD3-204ENST00000418628 SMARCC1Q92922 1105 aaPredicted RBP24.79■■□□□ 1.56
PTCD3-204ENST00000418628 SLC52A2Q9HAB3 445 aa24.79■■□□□ 1.56
PTCD3-204ENST00000418628 ANO8Q9HCE9 1232 aaPredicted RBP24.79■■□□□ 1.56
PTCD3-204ENST00000418628 IL17REQ8NFR9 667 aa24.78■■□□□ 1.56
PTCD3-204ENST00000418628 PNNQ9H307 717 aaKnown RBP24.78■■□□□ 1.56
PTCD3-204ENST00000418628 LRP5O75197 1615 aa24.78■■□□□ 1.56
PTCD3-204ENST00000418628 CABP4P57796 275 aa24.77■■□□□ 1.56
PTCD3-204ENST00000418628 ATG3Q9NT62 314 aa24.77■■□□□ 1.56
PTCD3-204ENST00000418628 ASAP1Q9ULH1 1129 aa24.77■■□□□ 1.56
PTCD3-204ENST00000418628 ADAMTS8Q9UP79 889 aa24.76■■□□□ 1.55
PTCD3-204ENST00000418628 LAMB4A4D0S4 1761 aa24.75■■□□□ 1.55
PTCD3-204ENST00000418628 HTATSF1O43719 755 aaKnown RBP24.75■■□□□ 1.55
PTCD3-204ENST00000418628 WDR43Q15061 677 aaKnown RBP eCLIP24.75■■□□□ 1.55
PTCD3-204ENST00000418628 NFE2L2Q16236 605 aa24.75■■□□□ 1.55
PTCD3-204ENST00000418628 NFATC2IPQ8NCF5 419 aa24.75■■□□□ 1.55
PTCD3-204ENST00000418628 MAPK8IP3Q9UPT6 1336 aa24.74■■□□□ 1.55
PTCD3-204ENST00000418628 C4AP0C0L4 1744 aa24.73■■□□□ 1.55
PTCD3-204ENST00000418628 CCNL1Q9UK58 526 aaPredicted RBP24.73■■□□□ 1.55
PTCD3-204ENST00000418628 PNISRQ8TF01 805 aaKnown RBP24.72■■□□□ 1.55
PTCD3-204ENST00000418628 LOC102724428A0A0B4J2F2 783 aa24.71■■□□□ 1.55
PTCD3-204ENST00000418628 NEFMP07197 916 aa24.71■■□□□ 1.55
PTCD3-204ENST00000418628 SIK1P57059 783 aa24.71■■□□□ 1.55
PTCD3-204ENST00000418628 AKT1S1Q96B36 256 aa24.71■■□□□ 1.55
PTCD3-204ENST00000418628 RUNDC1Q96C34 613 aa24.71■■□□□ 1.55
PTCD3-204ENST00000418628 KCNQ4P56696 695 aa24.7■■□□□ 1.54
PTCD3-204ENST00000418628 ZNF827Q17R98 1081 aa24.7■■□□□ 1.54
PTCD3-204ENST00000418628 SLC4A9Q96Q91 983 aa24.7■■□□□ 1.54
PTCD3-204ENST00000418628 MRS2Q9HD23 443 aa24.7■■□□□ 1.54
PTCD3-204ENST00000418628 NBPF14Q5TI25 921 aa24.69■■□□□ 1.54
PTCD3-204ENST00000418628 TMPOP42166 694 aaKnown RBP24.68■■□□□ 1.54
PTCD3-204ENST00000418628 SLC15A2Q16348 729 aa24.68■■□□□ 1.54
PTCD3-204ENST00000418628 MCM10Q7L590 875 aa24.68■■□□□ 1.54
PTCD3-204ENST00000418628 CCDC146Q8IYE0 955 aa24.68■■□□□ 1.54
PTCD3-204ENST00000418628 R3HDM1Q15032 1099 aaKnown RBP24.67■■□□□ 1.54
PTCD3-204ENST00000418628 PSDA5PKW4 1024 aaPredicted RBP24.66■■□□□ 1.54
PTCD3-204ENST00000418628 TEFQ10587 303 aa24.66■■□□□ 1.54
PTCD3-204ENST00000418628 ITPK1Q13572 414 aa24.66■■□□□ 1.54
PTCD3-204ENST00000418628 DCTN1Q14203 1278 aa24.66■■□□□ 1.54
PTCD3-204ENST00000418628 RTF1Q92541 710 aaKnown RBP24.66■■□□□ 1.54
PTCD3-204ENST00000418628 STK32BQ9NY57 414 aa24.65■■□□□ 1.54
PTCD3-204ENST00000418628 SLC39A6Q13433 755 aa24.63■■□□□ 1.53
PTCD3-204ENST00000418628 LINC00116Q8NCU8 138 aa24.63■■□□□ 1.53
PTCD3-204ENST00000418628 HMGB2P26583 209 aaKnown RBP24.62■■□□□ 1.53
PTCD3-204ENST00000418628 ATP6V1AP38606 617 aa24.62■■□□□ 1.53
PTCD3-204ENST00000418628 RIPK4P57078 832 aa24.61■■□□□ 1.53
PTCD3-204ENST00000418628 ZNF790Q6PG37 636 aa24.61■■□□□ 1.53
PTCD3-204ENST00000418628 PNPLA7Q6ZV29 1317 aa24.61■■□□□ 1.53
PTCD3-204ENST00000418628 TRIM35Q9UPQ4 493 aa24.6■■□□□ 1.53
PTCD3-204ENST00000418628 CNTNAP4Q9C0A0 1308 aa24.6■■□□□ 1.53
PTCD3-204ENST00000418628 PTCD1O75127 700 aaKnown RBP24.59■■□□□ 1.53
PTCD3-204ENST00000418628 LMOD3Q0VAK6 560 aa24.59■■□□□ 1.53
PTCD3-204ENST00000418628 RBM42Q9BTD8 480 aaKnown RBP24.59■■□□□ 1.53
PTCD3-204ENST00000418628 THUMPD2Q9BTF0 503 aaKnown RBP24.59■■□□□ 1.53
PTCD3-204ENST00000418628 RRP7AQ9Y3A4 280 aaKnown RBP24.59■■□□□ 1.53
PTCD3-204ENST00000418628 HEG1Q9ULI3 1381 aa24.58■■□□□ 1.53
PTCD3-204ENST00000418628 VSIG10Q8N0Z9 540 aa24.58■■□□□ 1.53
PTCD3-204ENST00000418628 BTBD11A6QL63 1104 aa24.57■■□□□ 1.52
PTCD3-204ENST00000418628 DIEXFQ68CQ4 756 aaKnown RBP24.57■■□□□ 1.52
PTCD3-204ENST00000418628 ZNF496Q96IT1 587 aaPredicted RBP24.57■■□□□ 1.52
PTCD3-204ENST00000418628 PDGFDQ9GZP0 370 aaPredicted RBP24.57■■□□□ 1.52
PTCD3-204ENST00000418628 CCER2I3L3R5 266 aa24.56■■□□□ 1.52
PTCD3-204ENST00000418628 APAF1O14727 1248 aa24.56■■□□□ 1.52
PTCD3-204ENST00000418628 TAF7Q15545 349 aaPredicted RBP24.56■■□□□ 1.52
PTCD3-204ENST00000418628 AMIGO3Q86WK7 504 aa24.56■■□□□ 1.52
PTCD3-204ENST00000418628 BCORQ6W2J9 1755 aa24.56■■□□□ 1.52
PTCD3-204ENST00000418628 KCNQ3O43525 872 aa24.55■■□□□ 1.52
PTCD3-204ENST00000418628 RC3H1Q5TC82 1133 aaKnown RBP24.55■■□□□ 1.52
PTCD3-204ENST00000418628 TTC5Q8N0Z6 440 aa24.55■■□□□ 1.52
PTCD3-204ENST00000418628 SCN7AQ01118 1682 aa24.55■■□□□ 1.52
PTCD3-204ENST00000418628 NCBP3Q53F19 620 aaKnown RBP24.54■■□□□ 1.52
PTCD3-204ENST00000418628 DNAJC10Q8IXB1 793 aa24.53■■□□□ 1.52
PTCD3-204ENST00000418628 SRCAPQ6ZRS2 3230 aa24.53■■□□□ 1.52
PTCD3-204ENST00000418628 TFCP2L1Q9NZI6 479 aa24.52■■□□□ 1.52
PTCD3-204ENST00000418628 NEUROD2Q15784 382 aa24.51■■□□□ 1.51
PTCD3-204ENST00000418628 AK7Q96M32 723 aa24.51■■□□□ 1.51
PTCD3-204ENST00000418628 FMNL2Q96PY5 1086 aa24.51■■□□□ 1.51
PTCD3-204ENST00000418628 BABAM1Q9NWV8 329 aa24.51■■□□□ 1.51
PTCD3-204ENST00000418628 CYP19A1P11511 503 aaPredicted RBP24.5■■□□□ 1.51
PTCD3-204ENST00000418628 SSFA2P28290 1259 aa24.5■■□□□ 1.51
PTCD3-204ENST00000418628 CRKLP46109 303 aaKnown RBP24.5■■□□□ 1.51
PTCD3-204ENST00000418628 CCDC27Q2M243 656 aa24.49■■□□□ 1.51
PTCD3-204ENST00000418628 COL23A1Q86Y22 540 aaPredicted RBP24.49■■□□□ 1.51
PTCD3-204ENST00000418628 GNPATO15228 680 aa24.48■■□□□ 1.51
PTCD3-204ENST00000418628 INTS5Q6P9B9 1019 aaKnown RBP24.48■■□□□ 1.51
PTCD3-204ENST00000418628 MIS18AQ9NYP9 233 aa24.48■■□□□ 1.51
PTCD3-204ENST00000418628 FLAD1Q8NFF5 587 aa24.47■■□□□ 1.51
PTCD3-204ENST00000418628 SLC16A10Q8TF71 515 aa24.47■■□□□ 1.51
PTCD3-204ENST00000418628 RPS6KA4O75676 772 aa24.46■■□□□ 1.51
PTCD3-204ENST00000418628 SGIP1Q9BQI5 828 aa24.46■■□□□ 1.51
PTCD3-204ENST00000418628 CCDC87Q9NVE4 849 aa24.46■■□□□ 1.51
PTCD3-204ENST00000418628 KIF13BQ9NQT8 1826 aa24.46■■□□□ 1.51
PTCD3-204ENST00000418628 CACNA1FO60840 1977 aa24.45■■□□□ 1.51
PTCD3-204ENST00000418628 SOS1Q07889 1333 aaPredicted RBP24.45■■□□□ 1.5
PTCD3-204ENST00000418628 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP24.45■■□□□ 1.5
PTCD3-204ENST00000418628 CHL1O00533 1208 aa24.45■■□□□ 1.5
Retrieved 100 of 20,778 RNA–protein pairs in 41 ms