RNA–Protein interactions for RNA: ENST00000415148.6

CD44-206, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 2,369 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-206ENST00000415148 ZSCAN30Q86W11 494 aa11.98□□□□□ -0.49
CD44-206ENST00000415148 KDRP35968 1356 aa11.98□□□□□ -0.49
CD44-206ENST00000415148 FMN2Q9NZ56 1722 aa11.98□□□□□ -0.49
CD44-206ENST00000415148 GNAI2P04899 355 aa11.98□□□□□ -0.49
CD44-206ENST00000415148 MLECQ14165 292 aa11.98□□□□□ -0.49
CD44-206ENST00000415148 SBNO1A3KN83 1393 aa11.97□□□□□ -0.49
CD44-206ENST00000415148 PLEKHG1Q9ULL1 1385 aa11.97□□□□□ -0.49
CD44-206ENST00000415148 EPB41L2O43491 1005 aaKnown RBP11.97□□□□□ -0.49
CD44-206ENST00000415148 GNAI3P08754 354 aa11.97□□□□□ -0.49
CD44-206ENST00000415148 RBM10P98175 930 aaKnown RBP11.97□□□□□ -0.49
CD44-206ENST00000415148 TSPYL4Q9UJ04 414 aa11.97□□□□□ -0.49
CD44-206ENST00000415148 SALL3Q9BXA9 1300 aa11.97□□□□□ -0.49
CD44-206ENST00000415148 TRHP20396 242 aaPredicted RBP11.97□□□□□ -0.49
CD44-206ENST00000415148 MTHFSDQ2M296 383 aaKnown RBP11.97□□□□□ -0.49
CD44-206ENST00000415148 HS1BP3Q53T59 392 aa11.97□□□□□ -0.49
CD44-206ENST00000415148 IL17RAQ96F46 866 aa11.97□□□□□ -0.49
CD44-206ENST00000415148 PKNOX2Q96KN3 472 aa11.97□□□□□ -0.49
CD44-206ENST00000415148 BABAM1Q9NWV8 329 aa11.97□□□□□ -0.49
CD44-206ENST00000415148 FLT4P35916 1363 aa11.96□□□□□ -0.49
CD44-206ENST00000415148 ANAPC15P60006 121 aa11.96□□□□□ -0.49
CD44-206ENST00000415148 TSHZ3Q63HK5 1081 aa11.96□□□□□ -0.49
CD44-206ENST00000415148 STK31Q9BXU1 1019 aa11.96□□□□□ -0.49
CD44-206ENST00000415148 SRCIN1Q9C0H9 1055 aa11.96□□□□□ -0.49
CD44-206ENST00000415148 OFD1O75665 1012 aa11.96□□□□□ -0.5
CD44-206ENST00000415148 XPCQ01831 940 aaPredicted RBP11.96□□□□□ -0.5
CD44-206ENST00000415148 TMEM63CQ9P1W3 806 aa11.96□□□□□ -0.5
CD44-206ENST00000415148 MAP3K19Q56UN5 1328 aa11.95□□□□□ -0.5
CD44-206ENST00000415148 TUBGCP6Q96RT7 1819 aa11.95□□□□□ -0.5
CD44-206ENST00000415148 PTPRUQ92729 1446 aa11.95□□□□□ -0.5
CD44-206ENST00000415148 MCCP23508 829 aa11.95□□□□□ -0.5
CD44-206ENST00000415148 ATP8B2P98198 1209 aa11.95□□□□□ -0.5
CD44-206ENST00000415148 CCDC30Q5VVM6 783 aa11.95□□□□□ -0.5
CD44-206ENST00000415148 LRRCC1Q9C099 1032 aa11.95□□□□□ -0.5
CD44-206ENST00000415148 IGSF1Q8N6C5 1336 aa11.95□□□□□ -0.5
CD44-206ENST00000415148 LRRC37A3O60309 1634 aa11.95□□□□□ -0.5
CD44-206ENST00000415148 G2E3Q7L622 706 aa11.94□□□□□ -0.5
CD44-206ENST00000415148 STAP2Q9UGK3 403 aa11.94□□□□□ -0.5
CD44-206ENST00000415148 AOX1Q06278 1338 aa11.94□□□□□ -0.5
CD44-206ENST00000415148 TPM2P07951 284 aa11.94□□□□□ -0.5
CD44-206ENST00000415148 SLC4A10Q6U841 1118 aa11.94□□□□□ -0.5
CD44-206ENST00000415148 INTS4Q96HW7 963 aaKnown RBP11.94□□□□□ -0.5
CD44-206ENST00000415148 ESYT1Q9BSJ8 1104 aa11.94□□□□□ -0.5
CD44-206ENST00000415148 R3HCC1Q9Y3T6 440 aaKnown RBP11.94□□□□□ -0.5
CD44-206ENST00000415148 CACNA1FO60840 1977 aa11.94□□□□□ -0.5
CD44-206ENST00000415148 N4BP2Q86UW6 1770 aaPredicted RBP11.94□□□□□ -0.5
CD44-206ENST00000415148 SYCE3A1L190 88 aa11.93□□□□□ -0.5
CD44-206ENST00000415148 CUL4AQ13619 759 aa11.93□□□□□ -0.5
CD44-206ENST00000415148 XRN1Q8IZH2 1706 aaKnown RBP11.93□□□□□ -0.5
CD44-206ENST00000415148 PXDNLA1KZ92 1463 aa11.93□□□□□ -0.5
CD44-206ENST00000415148 PDLIM2Q96JY6 352 aa11.93□□□□□ -0.5
CD44-206ENST00000415148 MIS18AQ9NYP9 233 aa11.93□□□□□ -0.5
CD44-206ENST00000415148 F6X3S4 739 aa11.92□□□□□ -0.5
CD44-206ENST00000415148 MX1P20591 662 aa11.92□□□□□ -0.5
CD44-206ENST00000415148 GLIPR1L2Q4G1C9 344 aa11.92□□□□□ -0.5
CD44-206ENST00000415148 FAM208AQ9UK61 1670 aaKnown RBP11.92□□□□□ -0.5
CD44-206ENST00000415148 FOXO3O43524 673 aa11.92□□□□□ -0.5
CD44-206ENST00000415148 MBD3O95983 291 aa11.92□□□□□ -0.5
CD44-206ENST00000415148 MSNP26038 577 aaKnown RBP11.92□□□□□ -0.5
CD44-206ENST00000415148 NEK4P51957 841 aa11.92□□□□□ -0.5
CD44-206ENST00000415148 FLIIQ13045 1269 aa11.92□□□□□ -0.5
CD44-206ENST00000415148 NOL8Q76FK4 1167 aaKnown RBP11.92□□□□□ -0.5
CD44-206ENST00000415148 RNF214Q8ND24 703 aa11.92□□□□□ -0.5
CD44-206ENST00000415148 TMX3Q96JJ7 454 aa11.92□□□□□ -0.5
CD44-206ENST00000415148 EYA1Q99502 592 aa11.92□□□□□ -0.5
CD44-206ENST00000415148 RIMS1Q86UR5 1692 aaKnown RBP11.92□□□□□ -0.5
CD44-206ENST00000415148 ZBTB7CA1YPR0 619 aa11.91□□□□□ -0.5
CD44-206ENST00000415148 CHMLP26374 656 aa11.91□□□□□ -0.5
CD44-206ENST00000415148 FOXD4L6Q3SYB3 417 aaPredicted RBP11.91□□□□□ -0.5
CD44-206ENST00000415148 FOXD4L3Q6VB84 417 aaPredicted RBP11.91□□□□□ -0.5
CD44-206ENST00000415148 PALD1Q9ULE6 856 aa11.91□□□□□ -0.5
CD44-206ENST00000415148 GNAT3A8MTJ3 354 aa11.91□□□□□ -0.5
CD44-206ENST00000415148 MPNDQ8N594 471 aa11.91□□□□□ -0.5
CD44-206ENST00000415148 NOL7Q9UMY1 257 aaKnown RBP11.91□□□□□ -0.5
CD44-206ENST00000415148 BRD1O95696 1058 aa11.9□□□□□ -0.5
CD44-206ENST00000415148 AMPHP49418 695 aa11.9□□□□□ -0.5
CD44-206ENST00000415148 LRSAM1Q6UWE0 723 aa11.9□□□□□ -0.5
CD44-206ENST00000415148 EXOC6BQ9Y2D4 811 aa11.9□□□□□ -0.5
CD44-206ENST00000415148 RAB11FIP3O75154 756 aa11.9□□□□□ -0.51
CD44-206ENST00000415148 LTKP29376 864 aa11.9□□□□□ -0.51
CD44-206ENST00000415148 TERF1P54274 439 aa11.9□□□□□ -0.51
CD44-206ENST00000415148 FKBP5Q13451 457 aaPredicted RBP11.9□□□□□ -0.51
CD44-206ENST00000415148 JARID2Q92833 1246 aaPredicted RBP11.9□□□□□ -0.51
CD44-206ENST00000415148 TBX22Q9Y458 520 aa11.9□□□□□ -0.51
CD44-206ENST00000415148 CEP170BQ9Y4F5 1589 aaPredicted RBP11.89□□□□□ -0.51
CD44-206ENST00000415148 USP54Q70EL1 1684 aa11.89□□□□□ -0.51
CD44-206ENST00000415148 ARID3AQ99856 593 aa11.89□□□□□ -0.51
CD44-206ENST00000415148 CHMP4AQ9BY43 222 aa11.89□□□□□ -0.51
CD44-206ENST00000415148 TAF7Q15545 349 aaPredicted RBP11.89□□□□□ -0.51
CD44-206ENST00000415148 GDPD2Q9HCC8 539 aa11.89□□□□□ -0.51
CD44-206ENST00000415148 FAM13BQ9NYF5 915 aa11.89□□□□□ -0.51
CD44-206ENST00000415148 EID1Q9Y6B2 187 aa11.89□□□□□ -0.51
CD44-206ENST00000415148 PNMA6EA0A0J9YXQ4 647 aa11.88□□□□□ -0.51
CD44-206ENST00000415148 SSH3Q8TE77 659 aa11.88□□□□□ -0.51
CD44-206ENST00000415148 PDCL3Q9H2J4 239 aa11.88□□□□□ -0.51
CD44-206ENST00000415148 PIK3C2AO00443 1686 aa11.88□□□□□ -0.51
CD44-206ENST00000415148 ZNF500O60304 480 aaPredicted RBP11.87□□□□□ -0.51
CD44-206ENST00000415148 DTNBO60941 627 aa11.87□□□□□ -0.51
CD44-206ENST00000415148 MCM5P33992 734 aa11.87□□□□□ -0.51
CD44-206ENST00000415148 PDZRN4Q6ZMN7 1036 aaPredicted RBP11.87□□□□□ -0.51
CD44-206ENST00000415148 NGDNQ8NEJ9 315 aaKnown RBP11.87□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 210.4 ms