RNA–Protein interactions for RNA: ENST00000411525.1

LINC00539-201, long intergenic non-protein coding RNA 539, humanhuman

TSL 3

Gene LINC00539, Length 664 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00539-201ENST00000411525 SLFN5Q08AF3 891 aa14.72□□□□□ -0.05
LINC00539-201ENST00000411525 LMOD3Q0VAK6 560 aa14.72□□□□□ -0.05
LINC00539-201ENST00000411525 NBPF6Q5VWK0 638 aa14.72□□□□□ -0.05
LINC00539-201ENST00000411525 USHBP1Q8N6Y0 703 aa14.72□□□□□ -0.05
LINC00539-201ENST00000411525 ZCRB1Q8TBF4 217 aaKnown RBP14.72□□□□□ -0.05
LINC00539-201ENST00000411525 NBPF4Q96M43 638 aa14.72□□□□□ -0.05
LINC00539-201ENST00000411525 LRRC4BQ9NT99 713 aa14.72□□□□□ -0.05
LINC00539-201ENST00000411525 LY75O60449 1722 aa14.72□□□□□ -0.05
LINC00539-201ENST00000411525 DOT1LQ8TEK3 1739 aa14.72□□□□□ -0.05
LINC00539-201ENST00000411525 MAP3K5Q99683 1374 aa14.72□□□□□ -0.05
LINC00539-201ENST00000411525 UTRNP46939 3433 aa14.71□□□□□ -0.05
LINC00539-201ENST00000411525 ZNF827Q17R98 1081 aa14.71□□□□□ -0.05
LINC00539-201ENST00000411525 SYTL4Q96C24 671 aaPredicted RBP14.71□□□□□ -0.05
LINC00539-201ENST00000411525 SHANK3Q9BYB0 1731 aa14.7□□□□□ -0.06
LINC00539-201ENST00000411525 POLD1P28340 1107 aa14.7□□□□□ -0.06
LINC00539-201ENST00000411525 PRIM1P49642 420 aaKnown RBP14.7□□□□□ -0.06
LINC00539-201ENST00000411525 DUSP27Q5VZP5 1158 aa14.7□□□□□ -0.06
LINC00539-201ENST00000411525 TRMT2AQ8IZ69 625 aaKnown RBP14.7□□□□□ -0.06
LINC00539-201ENST00000411525 AKT1S1Q96B36 256 aa14.7□□□□□ -0.06
LINC00539-201ENST00000411525 COL24A1Q17RW2 1714 aa14.69□□□□□ -0.06
LINC00539-201ENST00000411525 IL16Q14005 1332 aa14.69□□□□□ -0.06
LINC00539-201ENST00000411525 GAS2L2Q8NHY3 880 aa14.69□□□□□ -0.06
LINC00539-201ENST00000411525 SPINK5Q9NQ38 1064 aaPredicted RBP14.69□□□□□ -0.06
LINC00539-201ENST00000411525 TFCP2L1Q9NZI6 479 aa14.69□□□□□ -0.06
LINC00539-201ENST00000411525 RAPGEF4Q8WZA2 1011 aa14.68□□□□□ -0.06
LINC00539-201ENST00000411525 PLEKHG2Q9H7P9 1386 aa14.68□□□□□ -0.06
LINC00539-201ENST00000411525 TUBGCP6Q96RT7 1819 aa14.68□□□□□ -0.06
LINC00539-201ENST00000411525 CALD1Q05682 793 aaKnown RBP14.67□□□□□ -0.06
LINC00539-201ENST00000411525 MTHFSDQ2M296 383 aaKnown RBP14.67□□□□□ -0.06
LINC00539-201ENST00000411525 MEGF6O75095 1541 aa14.66□□□□□ -0.06
LINC00539-201ENST00000411525 PKD1L3Q7Z443 1732 aa14.66□□□□□ -0.06
LINC00539-201ENST00000411525 ZNF784Q8NCA9 323 aaPredicted RBP14.66□□□□□ -0.06
LINC00539-201ENST00000411525 MYH16Q9H6N6 1097 aa14.66□□□□□ -0.06
LINC00539-201ENST00000411525 PNPLA7Q6ZV29 1317 aa14.66□□□□□ -0.06
LINC00539-201ENST00000411525 TATP17735 454 aaPredicted RBP14.65□□□□□ -0.06
LINC00539-201ENST00000411525 GPR162Q16538 588 aa14.65□□□□□ -0.06
LINC00539-201ENST00000411525 CCNL1Q9UK58 526 aaPredicted RBP14.65□□□□□ -0.06
LINC00539-201ENST00000411525 FANCIQ9NVI1 1328 aa14.65□□□□□ -0.06
LINC00539-201ENST00000411525 RCAN3Q9UKA8 241 aa14.64□□□□□ -0.07
LINC00539-201ENST00000411525 SUPT16HQ9Y5B9 1047 aaKnown RBP14.64□□□□□ -0.07
LINC00539-201ENST00000411525 PCDH11XQ9BZA7 1347 aa14.64□□□□□ -0.07
LINC00539-201ENST00000411525 PCDH11YQ9BZA8 1340 aa14.64□□□□□ -0.07
LINC00539-201ENST00000411525 HTATSF1O43719 755 aaKnown RBP14.63□□□□□ -0.07
LINC00539-201ENST00000411525 AMOTQ4VCS5 1084 aa14.63□□□□□ -0.07
LINC00539-201ENST00000411525 PLEKHO1Q53GL0 409 aaPredicted RBP14.63□□□□□ -0.07
LINC00539-201ENST00000411525 KLHL34Q8N239 644 aa14.63□□□□□ -0.07
LINC00539-201ENST00000411525 THUMPD2Q9BTF0 503 aaKnown RBP14.63□□□□□ -0.07
LINC00539-201ENST00000411525 GTF3C3Q9Y5Q9 886 aa14.63□□□□□ -0.07
LINC00539-201ENST00000411525 GOLGB1Q14789 3259 aaKnown RBP14.63□□□□□ -0.07
LINC00539-201ENST00000411525 KCNQ4P56696 695 aa14.62□□□□□ -0.07
LINC00539-201ENST00000411525 DCTN1Q14203 1278 aa14.62□□□□□ -0.07
LINC00539-201ENST00000411525 RTF1Q92541 710 aaKnown RBP14.62□□□□□ -0.07
LINC00539-201ENST00000411525 IFT57Q9NWB7 429 aa14.62□□□□□ -0.07
LINC00539-201ENST00000411525 VIRMAQ69YN4 1812 aaKnown RBP14.62□□□□□ -0.07
LINC00539-201ENST00000411525 TAF1LQ8IZX4 1826 aa14.62□□□□□ -0.07
LINC00539-201ENST00000411525 GNAT3A8MTJ3 354 aa14.61□□□□□ -0.07
LINC00539-201ENST00000411525 MSH5O43196 834 aa14.61□□□□□ -0.07
LINC00539-201ENST00000411525 NEFLP07196 543 aa14.61□□□□□ -0.07
LINC00539-201ENST00000411525 FLAD1Q8NFF5 587 aa14.61□□□□□ -0.07
LINC00539-201ENST00000411525 ITGB4P16144 1822 aa14.61□□□□□ -0.07
LINC00539-201ENST00000411525 C5P01031 1676 aa14.61□□□□□ -0.07
LINC00539-201ENST00000411525 ADAMTS7Q9UKP4 1686 aa14.61□□□□□ -0.07
LINC00539-201ENST00000411525 RNF123Q5XPI4 1314 aa14.61□□□□□ -0.07
LINC00539-201ENST00000411525 GNAI1P63096 354 aa14.6□□□□□ -0.07
LINC00539-201ENST00000411525 ZNF530Q6P9A1 599 aaPredicted RBP14.6□□□□□ -0.07
LINC00539-201ENST00000411525 MCM10Q7L590 875 aa14.6□□□□□ -0.07
LINC00539-201ENST00000411525 TSR2Q969E8 191 aaKnown RBP14.6□□□□□ -0.07
LINC00539-201ENST00000411525 ZNF853P0CG23 659 aa14.59□□□□□ -0.07
LINC00539-201ENST00000411525 AKAP4Q5JQC9 854 aa14.59□□□□□ -0.07
LINC00539-201ENST00000411525 SMARCC1Q92922 1105 aaPredicted RBP14.59□□□□□ -0.07
LINC00539-201ENST00000411525 C1orf141Q5JVX7 400 aa14.58□□□□□ -0.08
LINC00539-201ENST00000411525 COL23A1Q86Y22 540 aaPredicted RBP14.58□□□□□ -0.08
LINC00539-201ENST00000411525 PELP1Q8IZL8 1130 aaKnown RBP14.58□□□□□ -0.08
LINC00539-201ENST00000411525 CFAP44Q96MT7 982 aa14.58□□□□□ -0.08
LINC00539-201ENST00000411525 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP14.58□□□□□ -0.08
LINC00539-201ENST00000411525 LAS1LQ9Y4W2 734 aaKnown RBP14.58□□□□□ -0.08
LINC00539-201ENST00000411525 GRIN3BO60391 1043 aa14.57□□□□□ -0.08
LINC00539-201ENST00000411525 CT47B1P0C2W7 299 aaPredicted RBP14.57□□□□□ -0.08
LINC00539-201ENST00000411525 RRP1P56182 461 aaKnown RBP14.57□□□□□ -0.08
LINC00539-201ENST00000411525 MPRIPQ6WCQ1 1025 aa14.57□□□□□ -0.08
LINC00539-201ENST00000411525 SPG7Q9UQ90 795 aa14.57□□□□□ -0.08
LINC00539-201ENST00000411525 CEMIPQ8WUJ3 1361 aa14.57□□□□□ -0.08
LINC00539-201ENST00000411525 PALLDQ8WX93 1383 aa14.57□□□□□ -0.08
LINC00539-201ENST00000411525 SCN11AQ9UI33 1791 aa14.57□□□□□ -0.08
LINC00539-201ENST00000411525 SIPA1L3O60292 1781 aaPredicted RBP14.56□□□□□ -0.08
LINC00539-201ENST00000411525 EXOSC9Q06265 439 aaKnown RBP14.56□□□□□ -0.08
LINC00539-201ENST00000411525 MBIPQ9NS73 344 aa14.56□□□□□ -0.08
LINC00539-201ENST00000411525 KDM3BQ7LBC6 1761 aa14.55□□□□□ -0.08
LINC00539-201ENST00000411525 CYP27B1O15528 508 aa14.55□□□□□ -0.08
LINC00539-201ENST00000411525 IL17REQ8NFR9 667 aa14.55□□□□□ -0.08
LINC00539-201ENST00000411525 NLGN2Q8NFZ4 835 aa14.55□□□□□ -0.08
LINC00539-201ENST00000411525 CHL1O00533 1208 aa14.54□□□□□ -0.08
LINC00539-201ENST00000411525 FKBP8Q14318 412 aa14.54□□□□□ -0.08
LINC00539-201ENST00000411525 NKX1-1Q15270 411 aaPredicted RBP14.54□□□□□ -0.08
LINC00539-201ENST00000411525 MRC1P22897 1456 aa14.54□□□□□ -0.08
LINC00539-201ENST00000411525 C4BP0C0L5 1744 aa14.54□□□□□ -0.08
LINC00539-201ENST00000411525 UBR3Q6ZT12 1888 aa14.53□□□□□ -0.08
LINC00539-201ENST00000411525 TOGARAM1Q9Y4F4 1720 aa14.53□□□□□ -0.08
LINC00539-201ENST00000411525 KDM6AO15550 1401 aaPredicted RBP14.53□□□□□ -0.08
LINC00539-201ENST00000411525 PHKG2P15735 406 aa14.53□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms