RNA–Protein interactions for RNA: ENST00000409441.5

LIMS1-204, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 1,627 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-204ENST00000409441 SYTL4Q96C24 671 aaPredicted RBP17.44■□□□□ 0.38
LIMS1-204ENST00000409441 CEMIPQ8WUJ3 1361 aa17.44■□□□□ 0.38
LIMS1-204ENST00000409441 KCNQ2O43526 872 aa17.43■□□□□ 0.38
LIMS1-204ENST00000409441 TEFQ10587 303 aa17.43■□□□□ 0.38
LIMS1-204ENST00000409441 SLC52A2Q9HAB3 445 aa17.43■□□□□ 0.38
LIMS1-204ENST00000409441 BCL9O00512 1426 aa17.43■□□□□ 0.38
LIMS1-204ENST00000409441 CALD1Q05682 793 aaKnown RBP17.42■□□□□ 0.38
LIMS1-204ENST00000409441 TAF7Q15545 349 aaPredicted RBP17.42■□□□□ 0.38
LIMS1-204ENST00000409441 WDR63Q8IWG1 891 aa17.42■□□□□ 0.38
LIMS1-204ENST00000409441 TMOD3Q9NYL9 352 aa17.42■□□□□ 0.38
LIMS1-204ENST00000409441 DLG5Q8TDM6 1919 aa17.41■□□□□ 0.38
LIMS1-204ENST00000409441 PIGBQ92521 554 aa17.41■□□□□ 0.38
LIMS1-204ENST00000409441 ZNF521Q96K83 1311 aa17.41■□□□□ 0.38
LIMS1-204ENST00000409441 PTF1AQ7RTS3 328 aa17.4■□□□□ 0.38
LIMS1-204ENST00000409441 TRIM37O94972 964 aa17.39■□□□□ 0.38
LIMS1-204ENST00000409441 BCL11BQ9C0K0 894 aaPredicted RBP17.39■□□□□ 0.38
LIMS1-204ENST00000409441 MIS18AQ9NYP9 233 aa17.39■□□□□ 0.38
LIMS1-204ENST00000409441 LAS1LQ9Y4W2 734 aaKnown RBP17.39■□□□□ 0.38
LIMS1-204ENST00000409441 BTBD11A6QL63 1104 aa17.39■□□□□ 0.37
LIMS1-204ENST00000409441 CFAP44Q96MT7 982 aa17.38■□□□□ 0.37
LIMS1-204ENST00000409441 ADAMTS7Q9UKP4 1686 aa17.37■□□□□ 0.37
LIMS1-204ENST00000409441 IL16Q14005 1332 aa17.37■□□□□ 0.37
LIMS1-204ENST00000409441 CHL1O00533 1208 aa17.37■□□□□ 0.37
LIMS1-204ENST00000409441 GOLGA2Q08379 1002 aa17.37■□□□□ 0.37
LIMS1-204ENST00000409441 RCAN3Q9UKA8 241 aa17.37■□□□□ 0.37
LIMS1-204ENST00000409441 KAT6BQ8WYB5 2073 aa17.37■□□□□ 0.37
LIMS1-204ENST00000409441 SCN11AQ9UI33 1791 aa17.37■□□□□ 0.37
LIMS1-204ENST00000409441 ZNF853P0CG23 659 aa17.36■□□□□ 0.37
LIMS1-204ENST00000409441 GNAI1P63096 354 aa17.36■□□□□ 0.37
LIMS1-204ENST00000409441 IFT57Q9NWB7 429 aa17.36■□□□□ 0.37
LIMS1-204ENST00000409441 SLC39A6Q13433 755 aa17.36■□□□□ 0.37
LIMS1-204ENST00000409441 ILDR2Q71H61 639 aa17.36■□□□□ 0.37
LIMS1-204ENST00000409441 SPINK5Q9NQ38 1064 aaPredicted RBP17.36■□□□□ 0.37
LIMS1-204ENST00000409441 ATG3Q9NT62 314 aa17.36■□□□□ 0.37
LIMS1-204ENST00000409441 BABAM1Q9NWV8 329 aa17.36■□□□□ 0.37
LIMS1-204ENST00000409441 ASAP1Q9ULH1 1129 aa17.36■□□□□ 0.37
LIMS1-204ENST00000409441 RRP1P56182 461 aaKnown RBP17.35■□□□□ 0.37
LIMS1-204ENST00000409441 CDCA7LQ96GN5 454 aa17.35■□□□□ 0.37
LIMS1-204ENST00000409441 TSPYL4Q9UJ04 414 aa17.35■□□□□ 0.37
LIMS1-204ENST00000409441 TOGARAM1Q9Y4F4 1720 aa17.35■□□□□ 0.37
LIMS1-204ENST00000409441 MRC1P22897 1456 aa17.34■□□□□ 0.37
LIMS1-204ENST00000409441 KCNQ3O43525 872 aa17.34■□□□□ 0.37
LIMS1-204ENST00000409441 ZNF790Q6PG37 636 aa17.34■□□□□ 0.37
LIMS1-204ENST00000409441 PPP4R3CPQ6ZMV5 832 aa17.34■□□□□ 0.37
LIMS1-204ENST00000409441 DOT1LQ8TEK3 1739 aa17.33■□□□□ 0.37
LIMS1-204ENST00000409441 SLFN5Q08AF3 891 aa17.33■□□□□ 0.37
LIMS1-204ENST00000409441 MBIPQ9NS73 344 aa17.33■□□□□ 0.37
LIMS1-204ENST00000409441 E9PSI1 815 aa17.32■□□□□ 0.36
LIMS1-204ENST00000409441 TTC5Q8N0Z6 440 aa17.32■□□□□ 0.36
LIMS1-204ENST00000409441 APBA3O96018 575 aa17.32■□□□□ 0.36
LIMS1-204ENST00000409441 SMARCC1Q92922 1105 aaPredicted RBP17.32■□□□□ 0.36
LIMS1-204ENST00000409441 TSR2Q969E8 191 aaKnown RBP17.32■□□□□ 0.36
LIMS1-204ENST00000409441 MYH16Q9H6N6 1097 aa17.32■□□□□ 0.36
LIMS1-204ENST00000409441 ITGB4P16144 1822 aa17.31■□□□□ 0.36
LIMS1-204ENST00000409441 PTCD1O75127 700 aaKnown RBP17.3■□□□□ 0.36
LIMS1-204ENST00000409441 VIRMAQ69YN4 1812 aaKnown RBP17.3■□□□□ 0.36
LIMS1-204ENST00000409441 SBF2Q86WG5 1849 aa17.3■□□□□ 0.36
LIMS1-204ENST00000409441 EIF4A1P60842 406 aaKnown RBP17.29■□□□□ 0.36
LIMS1-204ENST00000409441 B4GALNT3Q6L9W6 998 aa17.29■□□□□ 0.36
LIMS1-204ENST00000409441 TRMT2AQ8IZ69 625 aaKnown RBP17.29■□□□□ 0.36
LIMS1-204ENST00000409441 ZNF496Q96IT1 587 aaPredicted RBP17.29■□□□□ 0.36
LIMS1-204ENST00000409441 NHSQ6T4R5 1651 aa17.29■□□□□ 0.36
LIMS1-204ENST00000409441 FANCIQ9NVI1 1328 aa17.29■□□□□ 0.36
LIMS1-204ENST00000409441 EP400Q96L91 3159 aa17.29■□□□□ 0.36
LIMS1-204ENST00000409441 SF3B2Q13435 895 aaKnown RBP17.29■□□□□ 0.36
LIMS1-204ENST00000409441 CCDC125Q86Z20 511 aa17.29■□□□□ 0.36
LIMS1-204ENST00000409441 FMNL2Q96PY5 1086 aa17.29■□□□□ 0.36
LIMS1-204ENST00000409441 RBM42Q9BTD8 480 aaKnown RBP17.29■□□□□ 0.36
LIMS1-204ENST00000409441 PALLDQ8WX93 1383 aa17.28■□□□□ 0.36
LIMS1-204ENST00000409441 SIPA1L3O60292 1781 aaPredicted RBP17.27■□□□□ 0.36
LIMS1-204ENST00000409441 PLSCR1O15162 318 aa17.27■□□□□ 0.36
LIMS1-204ENST00000409441 LOC102724428A0A0B4J2F2 783 aa17.26■□□□□ 0.35
LIMS1-204ENST00000409441 SIK1P57059 783 aa17.26■□□□□ 0.35
LIMS1-204ENST00000409441 KRT24Q2M2I5 525 aa17.26■□□□□ 0.35
LIMS1-204ENST00000409441 DUSP27Q5VZP5 1158 aa17.26■□□□□ 0.35
LIMS1-204ENST00000409441 EXOSC9Q06265 439 aaKnown RBP17.25■□□□□ 0.35
LIMS1-204ENST00000409441 C1QBPQ07021 282 aaKnown RBP17.25■□□□□ 0.35
LIMS1-204ENST00000409441 C8orf58Q8NAV2 365 aa17.25■□□□□ 0.35
LIMS1-204ENST00000409441 UPF1Q92900 1129 aaKnown RBP eCLIP17.25■□□□□ 0.35
LIMS1-204ENST00000409441 SLC4A9Q96Q91 983 aa17.25■□□□□ 0.35
LIMS1-204ENST00000409441 ELL2O00472 640 aaPredicted RBP17.25■□□□□ 0.35
LIMS1-204ENST00000409441 GIGYF1O75420 1035 aaPredicted RBP17.25■□□□□ 0.35
LIMS1-204ENST00000409441 ATP6V1AP38606 617 aa17.25■□□□□ 0.35
LIMS1-204ENST00000409441 CCDC136Q96JN2 1154 aa17.25■□□□□ 0.35
LIMS1-204ENST00000409441 BTAF1O14981 1849 aa17.25■□□□□ 0.35
LIMS1-204ENST00000409441 SNRPA1P09661 255 aaKnown RBP17.24■□□□□ 0.35
LIMS1-204ENST00000409441 KCNQ4P56696 695 aa17.24■□□□□ 0.35
LIMS1-204ENST00000409441 VSIG10Q8N0Z9 540 aa17.24■□□□□ 0.35
LIMS1-204ENST00000409441 PROM2Q8N271 834 aa17.24■□□□□ 0.35
LIMS1-204ENST00000409441 HEG1Q9ULI3 1381 aa17.24■□□□□ 0.35
LIMS1-204ENST00000409441 PRAMEF22A3QJZ6 481 aa17.23■□□□□ 0.35
LIMS1-204ENST00000409441 EN1Q05925 392 aaPredicted RBP17.23■□□□□ 0.35
LIMS1-204ENST00000409441 TSPYL6Q8N831 410 aa17.23■□□□□ 0.35
LIMS1-204ENST00000409441 CCNL1Q9UK58 526 aaPredicted RBP17.23■□□□□ 0.35
LIMS1-204ENST00000409441 BAG6P46379 1132 aa17.22■□□□□ 0.35
LIMS1-204ENST00000409441 TXNRD1Q16881 649 aa17.22■□□□□ 0.35
LIMS1-204ENST00000409441 DEFB132Q7Z7B7 95 aa17.22■□□□□ 0.35
LIMS1-204ENST00000409441 KCPQ6ZWJ8 1503 aa17.22■□□□□ 0.35
LIMS1-204ENST00000409441 SLC27A3Q5K4L6 730 aa17.21■□□□□ 0.35
LIMS1-204ENST00000409441 DNAJC10Q8IXB1 793 aa17.21■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms