RNA–Protein interactions for RNA: ENST00000404008.6

USP42-202, Transcript of ubiquitin specific peptidase 42, humanhuman

TSL 2

Gene USP42, Length 1,380 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP42-202ENST00000404008 PAPPAQ13219 1627 aa38.58■■■■□ 3.77
USP42-202ENST00000404008 SF3B2Q13435 895 aaKnown RBP38.57■■■■□ 3.77
USP42-202ENST00000404008 SENP3-EIF4A1A0A087X0R7 540 aa38.57■■■■□ 3.76
USP42-202ENST00000404008 TEFQ10587 303 aa38.57■■■■□ 3.76
USP42-202ENST00000404008 APBA3O96018 575 aa38.56■■■■□ 3.76
USP42-202ENST00000404008 NCBP3Q53F19 620 aaKnown RBP38.55■■■■□ 3.76
USP42-202ENST00000404008 THUMPD2Q9BTF0 503 aaKnown RBP38.55■■■■□ 3.76
USP42-202ENST00000404008 LY75O60449 1722 aa38.54■■■■□ 3.76
USP42-202ENST00000404008 CCDC27Q2M243 656 aa38.51■■■■□ 3.76
USP42-202ENST00000404008 PLSCR1O15162 318 aa38.49■■■■□ 3.75
USP42-202ENST00000404008 BAG6P46379 1132 aa38.48■■■■□ 3.75
USP42-202ENST00000404008 ASAP1Q9ULH1 1129 aa38.48■■■■□ 3.75
USP42-202ENST00000404008 UBR2Q8IWV8 1755 aa38.48■■■■□ 3.75
USP42-202ENST00000404008 SOCS7O14512 581 aa38.47■■■■□ 3.75
USP42-202ENST00000404008 NGEFQ8N5V2 710 aa38.47■■■■□ 3.75
USP42-202ENST00000404008 ATG3Q9NT62 314 aa38.47■■■■□ 3.75
USP42-202ENST00000404008 KDM3BQ7LBC6 1761 aa38.47■■■■□ 3.75
USP42-202ENST00000404008 DEFB132Q7Z7B7 95 aa38.45■■■■□ 3.75
USP42-202ENST00000404008 PALLDQ8WX93 1383 aa38.45■■■■□ 3.75
USP42-202ENST00000404008 RREB1Q92766 1687 aa38.45■■■■□ 3.75
USP42-202ENST00000404008 TAF7Q15545 349 aaPredicted RBP38.44■■■■□ 3.74
USP42-202ENST00000404008 WWC1Q8IX03 1113 aa38.44■■■■□ 3.74
USP42-202ENST00000404008 SMARCC1Q92922 1105 aaPredicted RBP38.44■■■■□ 3.74
USP42-202ENST00000404008 SALL2Q9Y467 1007 aaPredicted RBP38.44■■■■□ 3.74
USP42-202ENST00000404008 EN1Q05925 392 aaPredicted RBP38.44■■■■□ 3.74
USP42-202ENST00000404008 BTBD11A6QL63 1104 aa38.43■■■■□ 3.74
USP42-202ENST00000404008 CAMKK2Q96RR4 588 aa38.42■■■■□ 3.74
USP42-202ENST00000404008 SLC39A6Q13433 755 aa38.41■■■■□ 3.74
USP42-202ENST00000404008 KCPQ6ZWJ8 1503 aa38.41■■■■□ 3.74
USP42-202ENST00000404008 ZNF831Q5JPB2 1677 aa38.4■■■■□ 3.74
USP42-202ENST00000404008 CALD1Q05682 793 aaKnown RBP38.38■■■■□ 3.73
USP42-202ENST00000404008 EZH2Q15910 746 aaKnown RBP38.38■■■■□ 3.73
USP42-202ENST00000404008 ZNF790Q6PG37 636 aa38.37■■■■□ 3.73
USP42-202ENST00000404008 MIS18AQ9NYP9 233 aa38.37■■■■□ 3.73
USP42-202ENST00000404008 NUP188Q5SRE5 1749 aa38.36■■■■□ 3.73
USP42-202ENST00000404008 PROM2Q8N271 834 aa38.35■■■■□ 3.73
USP42-202ENST00000404008 CICQ96RK0 1608 aaPredicted RBP38.35■■■■□ 3.73
USP42-202ENST00000404008 TXNRD1Q16881 649 aa38.34■■■■□ 3.73
USP42-202ENST00000404008 TTC5Q8N0Z6 440 aa38.34■■■■□ 3.73
USP42-202ENST00000404008 BABAM1Q9NWV8 329 aa38.34■■■■□ 3.73
USP42-202ENST00000404008 TAF1LQ8IZX4 1826 aa38.34■■■■□ 3.73
USP42-202ENST00000404008 ZNF521Q96K83 1311 aa38.33■■■■□ 3.73
USP42-202ENST00000404008 KCNQ3O43525 872 aa38.32■■■■□ 3.73
USP42-202ENST00000404008 C5P01031 1676 aa38.32■■■■□ 3.72
USP42-202ENST00000404008 LOC102724428A0A0B4J2F2 783 aa38.31■■■■□ 3.72
USP42-202ENST00000404008 PTCD1O75127 700 aaKnown RBP38.31■■■■□ 3.72
USP42-202ENST00000404008 SIK1P57059 783 aa38.31■■■■□ 3.72
USP42-202ENST00000404008 SLC27A3Q5K4L6 730 aa38.31■■■■□ 3.72
USP42-202ENST00000404008 CFAP44Q96MT7 982 aa38.31■■■■□ 3.72
USP42-202ENST00000404008 TJP1Q07157 1748 aa38.31■■■■□ 3.72
USP42-202ENST00000404008 CHL1O00533 1208 aa38.31■■■■□ 3.72
USP42-202ENST00000404008 ZNF853P0CG23 659 aa38.31■■■■□ 3.72
USP42-202ENST00000404008 WDR63Q8IWG1 891 aa38.31■■■■□ 3.72
USP42-202ENST00000404008 RBM42Q9BTD8 480 aaKnown RBP38.31■■■■□ 3.72
USP42-202ENST00000404008 IFT57Q9NWB7 429 aa38.31■■■■□ 3.72
USP42-202ENST00000404008 TSPYL4Q9UJ04 414 aa38.31■■■■□ 3.72
USP42-202ENST00000404008 LAS1LQ9Y4W2 734 aaKnown RBP38.31■■■■□ 3.72
USP42-202ENST00000404008 IL16Q14005 1332 aa38.3■■■■□ 3.72
USP42-202ENST00000404008 CCNL1Q9UK58 526 aaPredicted RBP38.3■■■■□ 3.72
USP42-202ENST00000404008 SLC4A9Q96Q91 983 aa38.29■■■■□ 3.72
USP42-202ENST00000404008 LRRC4BQ9NT99 713 aa38.29■■■■□ 3.72
USP42-202ENST00000404008 COL5A3P25940 1745 aaPredicted RBP38.28■■■■□ 3.72
USP42-202ENST00000404008 HNRNPUQ00839 825 aaKnown RBP eCLIP38.28■■■■□ 3.72
USP42-202ENST00000404008 ZNF496Q96IT1 587 aaPredicted RBP38.28■■■■□ 3.72
USP42-202ENST00000404008 GNAI1P63096 354 aa38.27■■■■□ 3.72
USP42-202ENST00000404008 KCNQ4P56696 695 aa38.26■■■■□ 3.72
USP42-202ENST00000404008 FMNL2Q96PY5 1086 aa38.25■■■■□ 3.71
USP42-202ENST00000404008 ATP6V1AP38606 617 aa38.24■■■■□ 3.71
USP42-202ENST00000404008 HEG1Q9ULI3 1381 aa38.24■■■■□ 3.71
USP42-202ENST00000404008 MBIPQ9NS73 344 aa38.23■■■■□ 3.71
USP42-202ENST00000404008 VSIG10Q8N0Z9 540 aa38.22■■■■□ 3.71
USP42-202ENST00000404008 EIF4A1P60842 406 aaKnown RBP38.21■■■■□ 3.71
USP42-202ENST00000404008 ITPK1Q13572 414 aa38.21■■■■□ 3.71
USP42-202ENST00000404008 C4BP0C0L5 1744 aa38.2■■■■□ 3.71
USP42-202ENST00000404008 LAMB4A4D0S4 1761 aa38.19■■■■□ 3.7
USP42-202ENST00000404008 SPINK5Q9NQ38 1064 aaPredicted RBP38.18■■■■□ 3.7
USP42-202ENST00000404008 GOLGA2Q08379 1002 aa38.16■■■■□ 3.7
USP42-202ENST00000404008 LINC00116Q8NCU8 138 aa38.16■■■■□ 3.7
USP42-202ENST00000404008 DNAJC10Q8IXB1 793 aa38.15■■■■□ 3.7
USP42-202ENST00000404008 TSR2Q969E8 191 aaKnown RBP38.15■■■■□ 3.7
USP42-202ENST00000404008 SNRPA1P09661 255 aaKnown RBP38.13■■■■□ 3.69
USP42-202ENST00000404008 HMGB2P26583 209 aaKnown RBP38.13■■■■□ 3.69
USP42-202ENST00000404008 ZBED9Q6R2W3 1325 aa38.12■■■■□ 3.69
USP42-202ENST00000404008 FANCIQ9NVI1 1328 aa38.12■■■■□ 3.69
USP42-202ENST00000404008 MYH14Q7Z406 1995 aaKnown RBP38.11■■■■□ 3.69
USP42-202ENST00000404008 GIGYF1O75420 1035 aaPredicted RBP38.11■■■■□ 3.69
USP42-202ENST00000404008 TEX13AQ9BXU3 409 aaPredicted RBP38.11■■■■□ 3.69
USP42-202ENST00000404008 PRAMEF22A3QJZ6 481 aa38.1■■■■□ 3.69
USP42-202ENST00000404008 MYH16Q9H6N6 1097 aa38.1■■■■□ 3.69
USP42-202ENST00000404008 TUBGCP6Q96RT7 1819 aa38.1■■■■□ 3.69
USP42-202ENST00000404008 KRT24Q2M2I5 525 aa38.09■■■■□ 3.69
USP42-202ENST00000404008 E9PSI1 815 aa38.08■■■■□ 3.69
USP42-202ENST00000404008 CYP19A1P11511 503 aaPredicted RBP38.08■■■■□ 3.69
USP42-202ENST00000404008 ANO8Q9HCE9 1232 aaPredicted RBP38.08■■■■□ 3.69
USP42-202ENST00000404008 AKT1S1Q96B36 256 aa38.07■■■■□ 3.69
USP42-202ENST00000404008 UBR3Q6ZT12 1888 aa38.07■■■■□ 3.69
USP42-202ENST00000404008 CNTNAP4Q9C0A0 1308 aa38.06■■■■□ 3.68
USP42-202ENST00000404008 SLFN5Q08AF3 891 aa38.06■■■■□ 3.68
USP42-202ENST00000404008 ZNF827Q17R98 1081 aa38.06■■■■□ 3.68
USP42-202ENST00000404008 CDCA7LQ96GN5 454 aa38.06■■■■□ 3.68
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms