RNA–Protein interactions for RNA: ENST00000401394.5

CTCF-202, Transcript of CCCTC-binding factor, humanhuman

TSL 1 (best) BASIC

Gene CTCF, Length 2,978 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-202ENST00000401394 CPSF1Q10570 1443 aaKnown RBP25.58■■□□□ 1.69
CTCF-202ENST00000401394 MTHFSDQ2M296 383 aaKnown RBP25.58■■□□□ 1.69
CTCF-202ENST00000401394 CPA1P15085 419 aa25.57■■□□□ 1.68
CTCF-202ENST00000401394 PDZRN4Q6ZMN7 1036 aaPredicted RBP25.57■■□□□ 1.68
CTCF-202ENST00000401394 ZKSCAN5Q9Y2L8 839 aa25.57■■□□□ 1.68
CTCF-202ENST00000401394 ARHGAP31Q2M1Z3 1444 aa25.57■■□□□ 1.68
CTCF-202ENST00000401394 EDC4Q6P2E9 1401 aaKnown RBP25.56■■□□□ 1.68
CTCF-202ENST00000401394 DDX54Q8TDD1 881 aaKnown RBP25.56■■□□□ 1.68
CTCF-202ENST00000401394 CLTCQ00610 1675 aaKnown RBP25.55■■□□□ 1.68
CTCF-202ENST00000401394 CDK12Q9NYV4 1490 aaPredicted RBP25.55■■□□□ 1.68
CTCF-202ENST00000401394 BRD1O95696 1058 aa25.55■■□□□ 1.68
CTCF-202ENST00000401394 PDCL3Q9H2J4 239 aa25.55■■□□□ 1.68
CTCF-202ENST00000401394 FKBP5Q13451 457 aaPredicted RBP25.54■■□□□ 1.68
CTCF-202ENST00000401394 MAP3K19Q56UN5 1328 aa25.54■■□□□ 1.68
CTCF-202ENST00000401394 TSPOAP1O95153 1857 aa25.54■■□□□ 1.68
CTCF-202ENST00000401394 PTMAP06454 111 aaKnown RBP25.53■■□□□ 1.68
CTCF-202ENST00000401394 MX1P20591 662 aa25.53■■□□□ 1.68
CTCF-202ENST00000401394 CHMLP26374 656 aa25.53■■□□□ 1.68
CTCF-202ENST00000401394 USP48Q86UV5 1035 aa25.53■■□□□ 1.68
CTCF-202ENST00000401394 LRRFIP2Q9Y608 721 aaKnown RBP25.53■■□□□ 1.68
CTCF-202ENST00000401394 ATP7BP35670 1465 aa25.52■■□□□ 1.68
CTCF-202ENST00000401394 PREX1Q8TCU6 1659 aa25.52■■□□□ 1.68
CTCF-202ENST00000401394 NUTM2GQ5VZR2 741 aa25.52■■□□□ 1.68
CTCF-202ENST00000401394 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP25.51■■□□□ 1.671e-5■□□□□ 10.5
CTCF-202ENST00000401394 ZNF500O60304 480 aaPredicted RBP25.51■■□□□ 1.67
CTCF-202ENST00000401394 USP25Q9UHP3 1055 aa25.51■■□□□ 1.67
CTCF-202ENST00000401394 LRRCC1Q9C099 1032 aa25.5■■□□□ 1.67
CTCF-202ENST00000401394 GNAI2P04899 355 aa25.5■■□□□ 1.67
CTCF-202ENST00000401394 PLCB2Q00722 1185 aa25.5■■□□□ 1.67
CTCF-202ENST00000401394 HMMRO75330 724 aa25.5■■□□□ 1.67
CTCF-202ENST00000401394 TTC12Q9H892 705 aaPredicted RBP25.5■■□□□ 1.67
CTCF-202ENST00000401394 CNPY2Q9Y2B0 182 aa25.5■■□□□ 1.67
CTCF-202ENST00000401394 PRDM10Q9NQV6 1147 aa25.49■■□□□ 1.67
CTCF-202ENST00000401394 PTPRCP08575 1304 aa25.49■■□□□ 1.67
CTCF-202ENST00000401394 ACEP12821 1306 aa25.49■■□□□ 1.67
CTCF-202ENST00000401394 AATKQ6ZMQ8 1374 aa25.49■■□□□ 1.67
CTCF-202ENST00000401394 SALL3Q9BXA9 1300 aa25.48■■□□□ 1.67
CTCF-202ENST00000401394 TSPY26PQ9H489 355 aa25.47■■□□□ 1.67
CTCF-202ENST00000401394 TTC21BQ7Z4L5 1316 aa25.47■■□□□ 1.67
CTCF-202ENST00000401394 KIF24Q5T7B8 1368 aa25.47■■□□□ 1.67
CTCF-202ENST00000401394 CRB1P82279 1406 aa25.47■■□□□ 1.67
CTCF-202ENST00000401394 PLPPR3Q6T4P5 718 aa25.47■■□□□ 1.67
CTCF-202ENST00000401394 FLIIQ13045 1269 aa25.46■■□□□ 1.67
CTCF-202ENST00000401394 LTV1Q96GA3 475 aaPredicted RBP25.46■■□□□ 1.67
CTCF-202ENST00000401394 OSBPL3Q9H4L5 887 aa25.46■■□□□ 1.67
CTCF-202ENST00000401394 RTF1Q92541 710 aaKnown RBP25.46■■□□□ 1.67
CTCF-202ENST00000401394 SRCIN1Q9C0H9 1055 aa25.46■■□□□ 1.67
CTCF-202ENST00000401394 HCLS1P14317 486 aaPredicted RBP25.45■■□□□ 1.67
CTCF-202ENST00000401394 RASEFQ8IZ41 740 aa25.45■■□□□ 1.67
CTCF-202ENST00000401394 PHAXQ9H814 394 aaKnown RBP25.45■■□□□ 1.67
CTCF-202ENST00000401394 CUL4AQ13619 759 aa25.45■■□□□ 1.66
CTCF-202ENST00000401394 COL9A3Q14050 684 aaPredicted RBP25.45■■□□□ 1.66
CTCF-202ENST00000401394 SPG7Q9UQ90 795 aa25.44■■□□□ 1.66
CTCF-202ENST00000401394 RIMS1Q86UR5 1692 aaKnown RBP25.44■■□□□ 1.66
CTCF-202ENST00000401394 DNTTIP2Q5QJE6 756 aaKnown RBP25.44■■□□□ 1.66
CTCF-202ENST00000401394 A2ML1A8K2U0 1454 aa25.44■■□□□ 1.66
CTCF-202ENST00000401394 PLEKHG5O94827 1062 aa25.43■■□□□ 1.66
CTCF-202ENST00000401394 ANXA1P04083 346 aa25.43■■□□□ 1.66
CTCF-202ENST00000401394 FIBPO43427 364 aa25.42■■□□□ 1.66
CTCF-202ENST00000401394 LARGE1O95461 756 aa25.42■■□□□ 1.66
CTCF-202ENST00000401394 TCHHQ07283 1943 aa25.42■■□□□ 1.66
CTCF-202ENST00000401394 HS1BP3Q53T59 392 aa25.42■■□□□ 1.66
CTCF-202ENST00000401394 CHMP3Q9Y3E7 222 aa25.42■■□□□ 1.66
CTCF-202ENST00000401394 CCDC39Q9UFE4 941 aa25.41■■□□□ 1.66
CTCF-202ENST00000401394 CCT4P50991 539 aaKnown RBP25.41■■□□□ 1.66
CTCF-202ENST00000401394 EYA1Q99502 592 aa25.41■■□□□ 1.66
CTCF-202ENST00000401394 USHBP1Q8N6Y0 703 aa25.41■■□□□ 1.66
CTCF-202ENST00000401394 USP44Q9H0E7 712 aa25.4■■□□□ 1.66
CTCF-202ENST00000401394 KIAA0232Q92628 1395 aa25.4■■□□□ 1.66
CTCF-202ENST00000401394 MBD3O95983 291 aa25.4■■□□□ 1.66
CTCF-202ENST00000401394 STK31Q9BXU1 1019 aa25.4■■□□□ 1.66
CTCF-202ENST00000401394 DLC1Q96QB1 1528 aa25.39■■□□□ 1.66
CTCF-202ENST00000401394 ATP8B2P98198 1209 aa25.39■■□□□ 1.66
CTCF-202ENST00000401394 GIMAP6Q6P9H5 292 aa25.39■■□□□ 1.66
CTCF-202ENST00000401394 CWC27Q6UX04 472 aaKnown RBP25.39■■□□□ 1.66
CTCF-202ENST00000401394 ROBO2Q9HCK4 1378 aa25.39■■□□□ 1.66
CTCF-202ENST00000401394 SURF6O75683 361 aaKnown RBP25.39■■□□□ 1.65
CTCF-202ENST00000401394 EIF2S2P20042 333 aaKnown RBP25.38■■□□□ 1.65
CTCF-202ENST00000401394 AP5Z1O43299 807 aa25.38■■□□□ 1.65
CTCF-202ENST00000401394 SLC26A8Q96RN1 970 aa25.38■■□□□ 1.65
CTCF-202ENST00000401394 REREQ9P2R6 1566 aa25.38■■□□□ 1.65
CTCF-202ENST00000401394 RPAP1Q9BWH6 1393 aaPredicted RBP25.37■■□□□ 1.65
CTCF-202ENST00000401394 MCCP23508 829 aa25.37■■□□□ 1.65
CTCF-202ENST00000401394 AK2P54819 239 aa25.37■■□□□ 1.65
CTCF-202ENST00000401394 ADCY5O95622 1261 aa25.36■■□□□ 1.65
CTCF-202ENST00000401394 BCL11BQ9C0K0 894 aaPredicted RBP25.36■■□□□ 1.65
CTCF-202ENST00000401394 FAM173BQ6P4H8 233 aa25.36■■□□□ 1.65
CTCF-202ENST00000401394 PPP1R42Q7Z4L9 355 aa25.36■■□□□ 1.65
CTCF-202ENST00000401394 NBPF7P0C2Y1 421 aaPredicted RBP25.35■■□□□ 1.65
CTCF-202ENST00000401394 RUFY3Q7L099 469 aa25.35■■□□□ 1.65
CTCF-202ENST00000401394 SNX14Q9Y5W7 946 aa25.35■■□□□ 1.65
CTCF-202ENST00000401394 AGLP35573 1532 aa25.34■■□□□ 1.65
CTCF-202ENST00000401394 SOS1Q07889 1333 aaPredicted RBP25.34■■□□□ 1.65
CTCF-202ENST00000401394 SYT1P21579 422 aa25.33■■□□□ 1.65
CTCF-202ENST00000401394 AMPHP49418 695 aa25.33■■□□□ 1.65
CTCF-202ENST00000401394 ADCK5Q3MIX3 580 aa25.33■■□□□ 1.65
CTCF-202ENST00000401394 SPC24Q8NBT2 197 aa25.33■■□□□ 1.65
CTCF-202ENST00000401394 IL17REQ8NFR9 667 aa25.33■■□□□ 1.65
CTCF-202ENST00000401394 HSPA4P34932 840 aa25.32■■□□□ 1.64
CTCF-202ENST00000401394 KIAA2012Q0VF49 1180 aa25.32■■□□□ 1.64
Retrieved 100 of 20,778 RNA–protein pairs in 11.9 ms