RNA–Protein interactions for RNA: ENST00000397606.7

PTPRD-204, Transcript of protein tyrosine phosphatase, receptor type D, humanhuman

TSL 1 (best) BASIC

Gene PTPRD, Length 5,038 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRD-204ENST00000397606 KIAA1210Q9ULL0 1709 aa10.13□□□□□ -0.79
PTPRD-204ENST00000397606 F6X3S4 739 aa10.13□□□□□ -0.79
PTPRD-204ENST00000397606 BICDL1Q6ZP65 573 aa10.13□□□□□ -0.79
PTPRD-204ENST00000397606 DIP2AQ14689 1571 aa10.12□□□□□ -0.79
PTPRD-204ENST00000397606 ATP6V1AP38606 617 aa10.12□□□□□ -0.79
PTPRD-204ENST00000397606 CDC42BPGQ6DT37 1551 aa10.12□□□□□ -0.79
PTPRD-204ENST00000397606 LRRCC1Q9C099 1032 aa10.12□□□□□ -0.79
PTPRD-204ENST00000397606 C1orf167Q5SNV9 1468 aa10.12□□□□□ -0.79
PTPRD-204ENST00000397606 PI4KAP2A4QPH2 592 aa10.12□□□□□ -0.79
PTPRD-204ENST00000397606 ANKRD13DQ6ZTN6 518 aa10.12□□□□□ -0.79
PTPRD-204ENST00000397606 PI4KAP1Q8N8J0 262 aa10.12□□□□□ -0.79
PTPRD-204ENST00000397606 ANP32BQ92688 251 aaKnown RBP10.12□□□□□ -0.79
PTPRD-204ENST00000397606 CARD10Q9BWT7 1032 aa10.12□□□□□ -0.79
PTPRD-204ENST00000397606 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP10.12□□□□□ -0.79
PTPRD-204ENST00000397606 FAM98CQ17RN3 349 aaKnown RBP10.12□□□□□ -0.79
PTPRD-204ENST00000397606 ZBTB3Q9H5J0 574 aa10.12□□□□□ -0.79
PTPRD-204ENST00000397606 PDE4AP27815 886 aa10.11□□□□□ -0.79
PTPRD-204ENST00000397606 CHPF2Q9P2E5 772 aa10.11□□□□□ -0.79
PTPRD-204ENST00000397606 MAP3K2Q9Y2U5 619 aa10.11□□□□□ -0.79
PTPRD-204ENST00000397606 IGSF1Q8N6C5 1336 aa10.11□□□□□ -0.79
PTPRD-204ENST00000397606 HOXB7P09629 217 aa10.11□□□□□ -0.79
PTPRD-204ENST00000397606 INTS3Q68E01 1043 aaKnown RBP10.11□□□□□ -0.79
PTPRD-204ENST00000397606 PDZRN3Q9UPQ7 1066 aa10.11□□□□□ -0.79
PTPRD-204ENST00000397606 WDR17Q8IZU2 1322 aa10.11□□□□□ -0.79
PTPRD-204ENST00000397606 VAMP4O75379 141 aa10.11□□□□□ -0.79
PTPRD-204ENST00000397606 ZNF790Q6PG37 636 aa10.11□□□□□ -0.79
PTPRD-204ENST00000397606 CEP126Q9P2H0 1117 aa10.11□□□□□ -0.79
PTPRD-204ENST00000397606 TRIM35Q9UPQ4 493 aa10.11□□□□□ -0.79
PTPRD-204ENST00000397606 ERBB3P21860 1342 aa10.11□□□□□ -0.79
PTPRD-204ENST00000397606 SLC52A2Q9HAB3 445 aa10.1□□□□□ -0.79
PTPRD-204ENST00000397606 TRMT112Q9UI30 125 aaKnown RBP10.1□□□□□ -0.79
PTPRD-204ENST00000397606 BLMP54132 1417 aaPredicted RBP10.1□□□□□ -0.79
PTPRD-204ENST00000397606 NCOA3Q9Y6Q9 1424 aa10.1□□□□□ -0.79
PTPRD-204ENST00000397606 CHL1O00533 1208 aa10.1□□□□□ -0.79
PTPRD-204ENST00000397606 BCL11BQ9C0K0 894 aaPredicted RBP10.1□□□□□ -0.79
PTPRD-204ENST00000397606 ISY1Q9ULR0 285 aaKnown RBP10.1□□□□□ -0.79
PTPRD-204ENST00000397606 CDK12Q9NYV4 1490 aaPredicted RBP10.1□□□□□ -0.79
PTPRD-204ENST00000397606 SLIT1O75093 1534 aa10.1□□□□□ -0.79
PTPRD-204ENST00000397606 CCDC158Q5M9N0 1113 aa10.1□□□□□ -0.79
PTPRD-204ENST00000397606 CNTROBQ8N137 903 aa10.1□□□□□ -0.79
PTPRD-204ENST00000397606 SIL1Q9H173 461 aa10.1□□□□□ -0.79
PTPRD-204ENST00000397606 GNL3LQ9NVN8 582 aaKnown RBP10.1□□□□□ -0.79
PTPRD-204ENST00000397606 TNS3Q68CZ2 1445 aa10.1□□□□□ -0.79
PTPRD-204ENST00000397606 IGHMBP2P38935 993 aaKnown RBP10.1□□□□□ -0.79
PTPRD-204ENST00000397606 AMOTL1Q8IY63 956 aa10.1□□□□□ -0.79
PTPRD-204ENST00000397606 TOMM22Q9NS69 142 aa10.1□□□□□ -0.79
PTPRD-204ENST00000397606 ST18O60284 1047 aa10.09□□□□□ -0.79
PTPRD-204ENST00000397606 ANXA1P04083 346 aa10.09□□□□□ -0.79
PTPRD-204ENST00000397606 COPS6Q7L5N1 327 aa10.09□□□□□ -0.79
PTPRD-204ENST00000397606 XAGE3Q8WTP9 111 aa10.09□□□□□ -0.79
PTPRD-204ENST00000397606 PTPRUQ92729 1446 aa10.09□□□□□ -0.79
PTPRD-204ENST00000397606 ANP32EQ9BTT0 268 aa10.09□□□□□ -0.79
PTPRD-204ENST00000397606 CWC25Q9NXE8 425 aaPredicted RBP10.09□□□□□ -0.79
PTPRD-204ENST00000397606 RBM19Q9Y4C8 960 aaKnown RBP10.09□□□□□ -0.79
PTPRD-204ENST00000397606 ADGRB1O14514 1584 aa10.09□□□□□ -0.79
PTPRD-204ENST00000397606 USP31Q70CQ4 1352 aa10.09□□□□□ -0.79
PTPRD-204ENST00000397606 ERVV-2B6SEH9 535 aa10.09□□□□□ -0.79
PTPRD-204ENST00000397606 ZKSCAN1P17029 563 aaPredicted RBP10.09□□□□□ -0.79
PTPRD-204ENST00000397606 RFC4P35249 363 aa10.09□□□□□ -0.79
PTPRD-204ENST00000397606 C20orf194Q5TEA3 1177 aa10.09□□□□□ -0.79
PTPRD-204ENST00000397606 LGR6Q9HBX8 967 aa10.09□□□□□ -0.79
PTPRD-204ENST00000397606 TRPC5Q9UL62 973 aaPredicted RBP10.09□□□□□ -0.79
PTPRD-204ENST00000397606 MRPL50Q8N5N7 158 aaKnown RBP10.09□□□□□ -0.79
PTPRD-204ENST00000397606 CERKQ8TCT0 537 aa10.09□□□□□ -0.79
PTPRD-204ENST00000397606 KIF13AQ9H1H9 1805 aa10.09□□□□□ -0.79
PTPRD-204ENST00000397606 KSR2Q6VAB6 950 aa10.09□□□□□ -0.79
PTPRD-204ENST00000397606 TBC1D2BQ9UPU7 963 aa10.09□□□□□ -0.79
PTPRD-204ENST00000397606 ARHGAP23Q9P227 1491 aa10.08□□□□□ -0.8
PTPRD-204ENST00000397606 PHKG2P15735 406 aa10.08□□□□□ -0.8
PTPRD-204ENST00000397606 PPP1R42Q7Z4L9 355 aa10.08□□□□□ -0.8
PTPRD-204ENST00000397606 FBXW7Q969H0 707 aa10.08□□□□□ -0.8
PTPRD-204ENST00000397606 TAOK2Q9UL54 1235 aa10.08□□□□□ -0.8
PTPRD-204ENST00000397606 BCORL1Q5H9F3 1711 aa10.08□□□□□ -0.8
PTPRD-204ENST00000397606 CPSF1Q10570 1443 aaKnown RBP10.08□□□□□ -0.8
PTPRD-204ENST00000397606 TSPYL6Q8N831 410 aa10.08□□□□□ -0.8
PTPRD-204ENST00000397606 CDC45O75419 566 aa10.08□□□□□ -0.8
PTPRD-204ENST00000397606 ALDH1L1O75891 902 aa10.08□□□□□ -0.8
PTPRD-204ENST00000397606 RAB11FIP3O75154 756 aa10.08□□□□□ -0.8
PTPRD-204ENST00000397606 GPTP24298 496 aa10.08□□□□□ -0.8
PTPRD-204ENST00000397606 RNF20Q5VTR2 975 aa10.08□□□□□ -0.8
PTPRD-204ENST00000397606 HIP1O00291 1037 aa10.07□□□□□ -0.8
PTPRD-204ENST00000397606 APPP05067 770 aa10.07□□□□□ -0.8
PTPRD-204ENST00000397606 IFIT5Q13325 482 aaKnown RBP10.07□□□□□ -0.8
PTPRD-204ENST00000397606 CHD1LQ86WJ1 897 aa10.07□□□□□ -0.8
PTPRD-204ENST00000397606 KIF1BPQ96EK5 621 aa10.07□□□□□ -0.8
PTPRD-204ENST00000397606 FSD1Q9BTV5 496 aa10.07□□□□□ -0.8
PTPRD-204ENST00000397606 ANO2Q9NQ90 1003 aa10.07□□□□□ -0.8
PTPRD-204ENST00000397606 DDX21Q9NR30 783 aaKnown RBP eCLIP10.07□□□□□ -0.8
PTPRD-204ENST00000397606 PPP1R1BQ9UD71 204 aaPredicted RBP10.07□□□□□ -0.8
PTPRD-204ENST00000397606 LRRFIP2Q9Y608 721 aaKnown RBP10.07□□□□□ -0.8
PTPRD-204ENST00000397606 KAT6BQ8WYB5 2073 aa10.07□□□□□ -0.8
PTPRD-204ENST00000397606 PPLO60437 1756 aa10.07□□□□□ -0.8
PTPRD-204ENST00000397606 MED14O60244 1454 aa10.07□□□□□ -0.8
PTPRD-204ENST00000397606 PRIM1P49642 420 aaKnown RBP10.07□□□□□ -0.8
PTPRD-204ENST00000397606 CHMP4CQ96CF2 233 aa10.07□□□□□ -0.8
PTPRD-204ENST00000397606 MROH2AA6NES4 1674 aa10.07□□□□□ -0.8
PTPRD-204ENST00000397606 ATP5J2-PTCD1G3V325 749 aa10.07□□□□□ -0.8
PTPRD-204ENST00000397606 TTC39AQ5SRH9 613 aa10.07□□□□□ -0.8
PTPRD-204ENST00000397606 NOP58Q9Y2X3 529 aaKnown RBP10.07□□□□□ -0.8
PTPRD-204ENST00000397606 KRT24Q2M2I5 525 aa10.06□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 74 ms