RNA–Protein interactions for RNA: ENST00000397053.6

UPF2-203, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 5 BASIC

Gene UPF2, Length 5,369 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-203ENST00000397053 ZNF710Q8N1W2 664 aa8.39□□□□□ -1.07
UPF2-203ENST00000397053 SPATA32Q96LK8 384 aa8.39□□□□□ -1.07
UPF2-203ENST00000397053 CCDC194A0A1B0GVG4 234 aa8.39□□□□□ -1.07
UPF2-203ENST00000397053 CNTLNQ9NXG0 1405 aa8.39□□□□□ -1.07
UPF2-203ENST00000397053 NF2P35240 595 aa8.39□□□□□ -1.07
UPF2-203ENST00000397053 MRE11P49959 708 aa8.39□□□□□ -1.07
UPF2-203ENST00000397053 FAM193AP78312 1265 aa8.39□□□□□ -1.07
UPF2-203ENST00000397053 FKBP15Q5T1M5 1219 aa8.39□□□□□ -1.07
UPF2-203ENST00000397053 CCDC82Q8N4S0 544 aa8.39□□□□□ -1.07
UPF2-203ENST00000397053 PDRG1Q9NUG6 133 aa8.39□□□□□ -1.07
UPF2-203ENST00000397053 NOB1Q9ULX3 412 aaKnown RBP8.39□□□□□ -1.07
UPF2-203ENST00000397053 PPP6R1Q9UPN7 881 aa8.39□□□□□ -1.07
UPF2-203ENST00000397053 CCDC88BA6NC98 1476 aa8.38□□□□□ -1.07
UPF2-203ENST00000397053 HLA-DOAP06340 250 aa8.38□□□□□ -1.07
UPF2-203ENST00000397053 SLC5A1P13866 664 aa8.38□□□□□ -1.07
UPF2-203ENST00000397053 RRS1Q15050 365 aaKnown RBP8.38□□□□□ -1.07
UPF2-203ENST00000397053 DDX46Q7L014 1031 aaKnown RBP8.38□□□□□ -1.07
UPF2-203ENST00000397053 FERMT1Q9BQL6 677 aa8.38□□□□□ -1.07
UPF2-203ENST00000397053 UPF3BQ9BZI7 483 aaKnown RBP8.38□□□□□ -1.07
UPF2-203ENST00000397053 BIN2Q9UBW5 565 aaPredicted RBP8.38□□□□□ -1.07
UPF2-203ENST00000397053 FOXO3O43524 673 aa8.38□□□□□ -1.07
UPF2-203ENST00000397053 EIF3JO75822 258 aaKnown RBP8.38□□□□□ -1.07
UPF2-203ENST00000397053 SPA17Q15506 151 aa8.38□□□□□ -1.07
UPF2-203ENST00000397053 DHX37Q8IY37 1157 aaKnown RBP8.38□□□□□ -1.07
UPF2-203ENST00000397053 DYDC1Q8WWB3 177 aa8.38□□□□□ -1.07
UPF2-203ENST00000397053 ZSCAN31Q96LW9 406 aaPredicted RBP8.38□□□□□ -1.07
UPF2-203ENST00000397053 CCDC113Q9H0I3 377 aa8.38□□□□□ -1.07
UPF2-203ENST00000397053 INCENPQ9NQS7 918 aa8.38□□□□□ -1.07
UPF2-203ENST00000397053 BAG4O95429 457 aaKnown RBP8.38□□□□□ -1.07
UPF2-203ENST00000397053 RFX1P22670 979 aa8.38□□□□□ -1.07
UPF2-203ENST00000397053 FILIP1Q7Z7B0 1213 aa8.38□□□□□ -1.07
UPF2-203ENST00000397053 OGFOD1Q8N543 542 aa8.38□□□□□ -1.07
UPF2-203ENST00000397053 DDX11Q96FC9 970 aa8.38□□□□□ -1.07
UPF2-203ENST00000397053 CCDC61Q9Y6R9 512 aa8.38□□□□□ -1.07
UPF2-203ENST00000397053 BCAR3O75815 825 aa8.38□□□□□ -1.07
UPF2-203ENST00000397053 RFC4P35249 363 aa8.38□□□□□ -1.07
UPF2-203ENST00000397053 PDZRN3Q9UPQ7 1066 aa8.38□□□□□ -1.07
UPF2-203ENST00000397053 RAPGEF3O95398 923 aa8.37□□□□□ -1.07
UPF2-203ENST00000397053 USP8P40818 1118 aa8.37□□□□□ -1.07
UPF2-203ENST00000397053 RNF41Q9H4P4 317 aaPredicted RBP8.37□□□□□ -1.07
UPF2-203ENST00000397053 TTC21AQ8NDW8 1320 aa8.37□□□□□ -1.07
UPF2-203ENST00000397053 CFAP100Q494V2 611 aa8.37□□□□□ -1.07
UPF2-203ENST00000397053 FYCO1Q9BQS8 1478 aa8.37□□□□□ -1.07
UPF2-203ENST00000397053 GNAT3A8MTJ3 354 aa8.37□□□□□ -1.07
UPF2-203ENST00000397053 BAG3O95817 575 aa8.37□□□□□ -1.07
UPF2-203ENST00000397053 TCERG1LQ5VWI1 586 aa8.37□□□□□ -1.07
UPF2-203ENST00000397053 CKAP2LQ8IYA6 745 aa8.37□□□□□ -1.07
UPF2-203ENST00000397053 CDC5LQ99459 802 aaKnown RBP8.37□□□□□ -1.07
UPF2-203ENST00000397053 ANKRD50Q9ULJ7 1429 aa8.37□□□□□ -1.07
UPF2-203ENST00000397053 GOLGA6L10A0A0M3HER8 536 aa8.37□□□□□ -1.07
UPF2-203ENST00000397053 ANKRD18BA2A2Z9 1011 aa8.37□□□□□ -1.07
UPF2-203ENST00000397053 UBAP1LF5GYI3 381 aa8.37□□□□□ -1.07
UPF2-203ENST00000397053 FGFR1OPO95684 399 aaKnown RBP8.37□□□□□ -1.07
UPF2-203ENST00000397053 IDEP14735 1019 aa8.37□□□□□ -1.07
UPF2-203ENST00000397053 ACTN2P35609 894 aa8.37□□□□□ -1.07
UPF2-203ENST00000397053 KLHL10Q6JEL2 608 aa8.37□□□□□ -1.07
UPF2-203ENST00000397053 RGS22Q8NE09 1264 aa8.37□□□□□ -1.07
UPF2-203ENST00000397053 UTP14AQ9BVJ6 771 aaKnown RBP8.37□□□□□ -1.07
UPF2-203ENST00000397053 SMTNL1A8MU46 457 aa8.36□□□□□ -1.07
UPF2-203ENST00000397053 GPTP24298 496 aa8.36□□□□□ -1.07
UPF2-203ENST00000397053 NOP2P46087 812 aaKnown RBP8.36□□□□□ -1.07
UPF2-203ENST00000397053 SPTY2D1Q68D10 685 aaPredicted RBP8.36□□□□□ -1.07
UPF2-203ENST00000397053 ZNF354CQ86Y25 554 aa8.36□□□□□ -1.07
UPF2-203ENST00000397053 PUF60Q9UHX1 559 aaKnown RBP8.36□□□□□ -1.07
UPF2-203ENST00000397053 TRAK2O60296 914 aa8.36□□□□□ -1.07
UPF2-203ENST00000397053 STXBP4Q6ZWJ1 553 aa8.36□□□□□ -1.07
UPF2-203ENST00000397053 BEGAINQ9BUH8 593 aa8.36□□□□□ -1.07
UPF2-203ENST00000397053 POLD1P28340 1107 aa8.36□□□□□ -1.07
UPF2-203ENST00000397053 PHAXQ9H814 394 aaKnown RBP8.36□□□□□ -1.07
UPF2-203ENST00000397053 HDAC9Q9UKV0 1011 aa8.36□□□□□ -1.07
UPF2-203ENST00000397053 PPP2R1AP30153 589 aa8.35□□□□□ -1.07
UPF2-203ENST00000397053 TAF12Q16514 161 aa8.35□□□□□ -1.07
UPF2-203ENST00000397053 TDRD12Q587J7 1177 aaKnown RBP8.35□□□□□ -1.07
UPF2-203ENST00000397053 MYD88Q99836 296 aa8.35□□□□□ -1.07
UPF2-203ENST00000397053 CCDC66A2RUB6 948 aa8.35□□□□□ -1.07
UPF2-203ENST00000397053 TOM1O60784 492 aa8.35□□□□□ -1.07
UPF2-203ENST00000397053 NLRP5P59047 1200 aa8.35□□□□□ -1.07
UPF2-203ENST00000397053 NBPF8Q3BBV2 869 aa8.35□□□□□ -1.07
UPF2-203ENST00000397053 NBPF14Q5TI25 921 aa8.35□□□□□ -1.07
UPF2-203ENST00000397053 CCDC174Q6PII3 467 aa8.35□□□□□ -1.07
UPF2-203ENST00000397053 LUZP1Q86V48 1076 aa8.35□□□□□ -1.07
UPF2-203ENST00000397053 SYCP3Q8IZU3 236 aa8.35□□□□□ -1.07
UPF2-203ENST00000397053 VAT1LQ9HCJ6 419 aa8.35□□□□□ -1.07
UPF2-203ENST00000397053 MAP2K1Q02750 393 aaPredicted RBP8.35□□□□□ -1.07
UPF2-203ENST00000397053 CCDC12Q8WUD4 166 aaPredicted RBP8.35□□□□□ -1.07
UPF2-203ENST00000397053 NUP62CLQ9H1M0 184 aa8.35□□□□□ -1.07
UPF2-203ENST00000397053 PDIA4P13667 645 aaKnown RBP8.35□□□□□ -1.07
UPF2-203ENST00000397053 ARL1P40616 181 aaPredicted RBP8.35□□□□□ -1.07
UPF2-203ENST00000397053 MRPS9P82933 396 aaKnown RBP8.35□□□□□ -1.07
UPF2-203ENST00000397053 AMOTQ4VCS5 1084 aa8.35□□□□□ -1.07
UPF2-203ENST00000397053 PPM1EQ8WY54 764 aa8.35□□□□□ -1.07
UPF2-203ENST00000397053 GLRX3O76003 335 aaKnown RBP8.35□□□□□ -1.07
UPF2-203ENST00000397053 TNNT1P13805 278 aa8.35□□□□□ -1.07
UPF2-203ENST00000397053 KIF1BPQ96EK5 621 aa8.35□□□□□ -1.07
UPF2-203ENST00000397053 SLC12A7Q9Y666 1083 aa8.35□□□□□ -1.07
UPF2-203ENST00000397053 ABCC8Q09428 1581 aa8.34□□□□□ -1.07
UPF2-203ENST00000397053 IFIT3O14879 490 aaKnown RBP8.34□□□□□ -1.07
UPF2-203ENST00000397053 PDE3AQ14432 1141 aa8.34□□□□□ -1.07
UPF2-203ENST00000397053 CATIPQ7Z7H3 387 aa8.34□□□□□ -1.07
UPF2-203ENST00000397053 RPAP2Q8IXW5 612 aaPredicted RBP8.34□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 90.2 ms