RNA–Protein interactions for RNA: ENST00000395969.6

VPS41-203, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 5 BASIC

Gene VPS41, Length 3,181 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-203ENST00000395969 MVPQ14764 893 aaKnown RBP6.81□□□□□ -1.32
VPS41-203ENST00000395969 NAP1L5Q96NT1 182 aaPredicted RBP6.81□□□□□ -1.32
VPS41-203ENST00000395969 COL5A3P25940 1745 aaPredicted RBP6.81□□□□□ -1.32
VPS41-203ENST00000395969 TJP1Q07157 1748 aa6.81□□□□□ -1.32
VPS41-203ENST00000395969 IPO8O15397 1037 aaKnown RBP6.81□□□□□ -1.32
VPS41-203ENST00000395969 NKX1-1Q15270 411 aaPredicted RBP6.81□□□□□ -1.32
VPS41-203ENST00000395969 CCDC146Q8IYE0 955 aa6.8□□□□□ -1.32
VPS41-203ENST00000395969 PMFBP1Q8TBY8 1022 aa6.8□□□□□ -1.32
VPS41-203ENST00000395969 EYA1Q99502 592 aa6.8□□□□□ -1.32
VPS41-203ENST00000395969 RRAGDQ9NQL2 400 aaPredicted RBP6.8□□□□□ -1.32
VPS41-203ENST00000395969 SAFB2Q14151 953 aaKnown RBP eCLIP6.8□□□□□ -1.32
VPS41-203ENST00000395969 ZKSCAN2Q63HK3 967 aa6.8□□□□□ -1.32
VPS41-203ENST00000395969 ATF7IPQ6VMQ6 1270 aa6.8□□□□□ -1.32
VPS41-203ENST00000395969 ZBTB40Q9NUA8 1239 aa6.8□□□□□ -1.32
VPS41-203ENST00000395969 ZRANB1Q9UGI0 708 aa6.8□□□□□ -1.32
VPS41-203ENST00000395969 SMC5Q8IY18 1101 aa6.79□□□□□ -1.32
VPS41-203ENST00000395969 ERBB3P21860 1342 aa6.79□□□□□ -1.32
VPS41-203ENST00000395969 BCORQ6W2J9 1755 aa6.79□□□□□ -1.32
VPS41-203ENST00000395969 FRAT2O75474 233 aaPredicted RBP6.79□□□□□ -1.32
VPS41-203ENST00000395969 CLUAP1Q96AJ1 413 aa6.79□□□□□ -1.32
VPS41-203ENST00000395969 IL17RAQ96F46 866 aa6.79□□□□□ -1.32
VPS41-203ENST00000395969 MBIPQ9NS73 344 aa6.79□□□□□ -1.32
VPS41-203ENST00000395969 DDX19BQ9UMR2 479 aa6.79□□□□□ -1.32
VPS41-203ENST00000395969 RGPD3A6NKT7 1758 aaPredicted RBP6.79□□□□□ -1.32
VPS41-203ENST00000395969 RGPD4Q7Z3J3 1758 aa6.79□□□□□ -1.32
VPS41-203ENST00000395969 SUGP2Q8IX01 1082 aaKnown RBP eCLIP6.79□□□□□ -1.32
VPS41-203ENST00000395969 NGDNQ8NEJ9 315 aaKnown RBP6.79□□□□□ -1.32
VPS41-203ENST00000395969 CRBNQ96SW2 442 aa6.79□□□□□ -1.32
VPS41-203ENST00000395969 RRP9O43818 475 aaKnown RBP6.78□□□□□ -1.32
VPS41-203ENST00000395969 AKAP4Q5JQC9 854 aa6.78□□□□□ -1.32
VPS41-203ENST00000395969 KDM6AO15550 1401 aaPredicted RBP6.78□□□□□ -1.32
VPS41-203ENST00000395969 HSP90AB2PQ58FF8 381 aa6.78□□□□□ -1.32
VPS41-203ENST00000395969 GCP02774 474 aa6.77□□□□□ -1.32
VPS41-203ENST00000395969 TICAM2Q86XR7 235 aa6.77□□□□□ -1.32
VPS41-203ENST00000395969 API5Q9BZZ5 524 aaKnown RBP6.77□□□□□ -1.32
VPS41-203ENST00000395969 UTYO14607 1347 aa6.77□□□□□ -1.33
VPS41-203ENST00000395969 ERBB4Q15303 1308 aa6.77□□□□□ -1.33
VPS41-203ENST00000395969 SPEF2Q9C093 1822 aa6.77□□□□□ -1.33
VPS41-203ENST00000395969 MEGF6O75095 1541 aa6.77□□□□□ -1.33
VPS41-203ENST00000395969 RGL2O15211 777 aa6.77□□□□□ -1.33
VPS41-203ENST00000395969 RBM10P98175 930 aaKnown RBP6.77□□□□□ -1.33
VPS41-203ENST00000395969 HSP90AA2PQ14568 343 aaPredicted RBP6.77□□□□□ -1.33
VPS41-203ENST00000395969 SSH1Q8WYL5 1049 aa6.77□□□□□ -1.33
VPS41-203ENST00000395969 ARAP2Q8WZ64 1704 aa6.77□□□□□ -1.33
VPS41-203ENST00000395969 LRP5O75197 1615 aa6.77□□□□□ -1.33
VPS41-203ENST00000395969 GNAT3A8MTJ3 354 aa6.77□□□□□ -1.33
VPS41-203ENST00000395969 ZBTB7BO15156 539 aaPredicted RBP6.77□□□□□ -1.33
VPS41-203ENST00000395969 TRIM27P14373 513 aa6.77□□□□□ -1.33
VPS41-203ENST00000395969 MTHFSDQ2M296 383 aaKnown RBP6.77□□□□□ -1.33
VPS41-203ENST00000395969 C8orf34Q49A92 452 aa6.77□□□□□ -1.33
VPS41-203ENST00000395969 KRT28Q7Z3Y7 464 aa6.77□□□□□ -1.33
VPS41-203ENST00000395969 DZIP1LQ8IYY4 767 aaKnown RBP6.77□□□□□ -1.33
VPS41-203ENST00000395969 EXOSC9Q06265 439 aaKnown RBP6.76□□□□□ -1.33
VPS41-203ENST00000395969 RRS1Q15050 365 aaKnown RBP6.76□□□□□ -1.33
VPS41-203ENST00000395969 BRINP3Q76B58 766 aa6.76□□□□□ -1.33
VPS41-203ENST00000395969 PROSER2Q86WR7 435 aaPredicted RBP6.76□□□□□ -1.33
VPS41-203ENST00000395969 NHSQ6T4R5 1651 aa6.76□□□□□ -1.33
VPS41-203ENST00000395969 SLIT2O94813 1529 aa6.76□□□□□ -1.33
VPS41-203ENST00000395969 C20orf194Q5TEA3 1177 aa6.76□□□□□ -1.33
VPS41-203ENST00000395969 LY75O60449 1722 aa6.76□□□□□ -1.33
VPS41-203ENST00000395969 EPB41L2O43491 1005 aaKnown RBP6.75□□□□□ -1.33
VPS41-203ENST00000395969 BCAR3O75815 825 aa6.75□□□□□ -1.33
VPS41-203ENST00000395969 VASPP50552 380 aaPredicted RBP6.75□□□□□ -1.33
VPS41-203ENST00000395969 NLRP6P59044 892 aa6.75□□□□□ -1.33
VPS41-203ENST00000395969 SULT6B1Q6IMI4 303 aa6.75□□□□□ -1.33
VPS41-203ENST00000395969 ABTB2Q8N961 1025 aa6.75□□□□□ -1.33
VPS41-203ENST00000395969 CLCN1P35523 988 aa6.75□□□□□ -1.33
VPS41-203ENST00000395969 FAM161AQ3B820 660 aa6.75□□□□□ -1.33
VPS41-203ENST00000395969 L1TD1Q5T7N2 865 aaKnown RBP6.75□□□□□ -1.33
VPS41-203ENST00000395969 DDX60Q8IY21 1712 aaKnown RBP6.75□□□□□ -1.33
VPS41-203ENST00000395969 COL24A1Q17RW2 1714 aa6.74□□□□□ -1.33
VPS41-203ENST00000395969 RLBP1P12271 317 aa6.74□□□□□ -1.33
VPS41-203ENST00000395969 NEUROD2Q15784 382 aa6.74□□□□□ -1.33
VPS41-203ENST00000395969 GCC1Q96CN9 775 aa6.74□□□□□ -1.33
VPS41-203ENST00000395969 AFDNP55196 1824 aaKnown RBP6.74□□□□□ -1.33
VPS41-203ENST00000395969 U2SURPO15042 1029 aaKnown RBP6.74□□□□□ -1.33
VPS41-203ENST00000395969 ATF3P18847 181 aa6.74□□□□□ -1.33
VPS41-203ENST00000395969 PDE4CQ08493 712 aa6.74□□□□□ -1.33
VPS41-203ENST00000395969 TAF7Q15545 349 aaPredicted RBP6.74□□□□□ -1.33
VPS41-203ENST00000395969 SKAP1Q86WV1 359 aa6.74□□□□□ -1.33
VPS41-203ENST00000395969 AOX1Q06278 1338 aa6.74□□□□□ -1.33
VPS41-203ENST00000395969 WDR17Q8IZU2 1322 aa6.74□□□□□ -1.33
VPS41-203ENST00000395969 TWISTNBQ3B726 338 aaPredicted RBP6.73□□□□□ -1.33
VPS41-203ENST00000395969 AEBP1Q8IUX7 1158 aa6.73□□□□□ -1.33
VPS41-203ENST00000395969 IL17REQ8NFR9 667 aa6.73□□□□□ -1.33
VPS41-203ENST00000395969 DOT1LQ8TEK3 1739 aa6.73□□□□□ -1.33
VPS41-203ENST00000395969 SCN7AQ01118 1682 aa6.73□□□□□ -1.33
VPS41-203ENST00000395969 ZBTB7CA1YPR0 619 aa6.73□□□□□ -1.33
VPS41-203ENST00000395969 ABCB7O75027 752 aa6.73□□□□□ -1.33
VPS41-203ENST00000395969 MTX1Q13505 466 aa6.73□□□□□ -1.33
VPS41-203ENST00000395969 PLEKHO1Q53GL0 409 aaPredicted RBP6.73□□□□□ -1.33
VPS41-203ENST00000395969 ORAI2Q96SN7 254 aa6.73□□□□□ -1.33
VPS41-203ENST00000395969 RWDD1Q9H446 243 aaPredicted RBP6.73□□□□□ -1.33
VPS41-203ENST00000395969 A0A1B0GUL6 1792 aa6.73□□□□□ -1.33
VPS41-203ENST00000395969 QSER1Q2KHR3 1735 aa6.73□□□□□ -1.33
VPS41-203ENST00000395969 USP42Q9H9J4 1324 aaKnown RBP6.73□□□□□ -1.33
VPS41-203ENST00000395969 CASZ1Q86V15 1759 aa6.73□□□□□ -1.33
VPS41-203ENST00000395969 HSP90AB1P08238 724 aaKnown RBP6.73□□□□□ -1.33
VPS41-203ENST00000395969 AMPHP49418 695 aa6.73□□□□□ -1.33
VPS41-203ENST00000395969 NUCB1Q02818 461 aa6.73□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms