RNA–Protein interactions for RNA: ENST00000393368.2

HMGB3P1-201, Transcript of high mobility group box 3 pseudogene 1, humanhuman

BASIC

Gene HMGB3P1, Length 573 nt, Biotype processed pseudogene.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3P1-201ENST00000393368 AKAP4Q5JQC9 854 aa10.27□□□□□ -0.77
HMGB3P1-201ENST00000393368 AKT1S1Q96B36 256 aa10.27□□□□□ -0.77
HMGB3P1-201ENST00000393368 NUDCQ9Y266 331 aa10.27□□□□□ -0.77
HMGB3P1-201ENST00000393368 CASZ1Q86V15 1759 aa10.26□□□□□ -0.77
HMGB3P1-201ENST00000393368 KAT6BQ8WYB5 2073 aa10.26□□□□□ -0.77
HMGB3P1-201ENST00000393368 ZNF316A6NFI3 1004 aaPredicted RBP10.26□□□□□ -0.77
HMGB3P1-201ENST00000393368 ERVV-2B6SEH9 535 aa10.26□□□□□ -0.77
HMGB3P1-201ENST00000393368 SMIM5Q71RC9 77 aa10.26□□□□□ -0.77
HMGB3P1-201ENST00000393368 NFATC2IPQ8NCF5 419 aa10.26□□□□□ -0.77
HMGB3P1-201ENST00000393368 LRP5O75197 1615 aa10.25□□□□□ -0.77
HMGB3P1-201ENST00000393368 LOC102724428A0A0B4J2F2 783 aa10.25□□□□□ -0.77
HMGB3P1-201ENST00000393368 RNMTO43148 476 aaKnown RBP10.25□□□□□ -0.77
HMGB3P1-201ENST00000393368 SIK1P57059 783 aa10.25□□□□□ -0.77
HMGB3P1-201ENST00000393368 ITPK1Q13572 414 aa10.25□□□□□ -0.77
HMGB3P1-201ENST00000393368 AMIGO3Q86WK7 504 aa10.25□□□□□ -0.77
HMGB3P1-201ENST00000393368 LINC00116Q8NCU8 138 aa10.25□□□□□ -0.77
HMGB3P1-201ENST00000393368 SMARCC1Q92922 1105 aaPredicted RBP10.25□□□□□ -0.77
HMGB3P1-201ENST00000393368 SLC4A9Q96Q91 983 aa10.25□□□□□ -0.77
HMGB3P1-201ENST00000393368 RBM42Q9BTD8 480 aaKnown RBP10.25□□□□□ -0.77
HMGB3P1-201ENST00000393368 TFCP2L1Q9NZI6 479 aa10.25□□□□□ -0.77
HMGB3P1-201ENST00000393368 ATF5Q9Y2D1 282 aaPredicted RBP10.25□□□□□ -0.77
HMGB3P1-201ENST00000393368 PNPLA7Q6ZV29 1317 aa10.25□□□□□ -0.77
HMGB3P1-201ENST00000393368 MYBBP1AQ9BQG0 1328 aaKnown RBP10.25□□□□□ -0.77
HMGB3P1-201ENST00000393368 MAP3K5Q99683 1374 aa10.25□□□□□ -0.77
HMGB3P1-201ENST00000393368 C5P01031 1676 aa10.25□□□□□ -0.77
HMGB3P1-201ENST00000393368 PTCD1O75127 700 aaKnown RBP10.24□□□□□ -0.77
HMGB3P1-201ENST00000393368 ATP6V1AP38606 617 aa10.24□□□□□ -0.77
HMGB3P1-201ENST00000393368 SLC39A6Q13433 755 aa10.24□□□□□ -0.77
HMGB3P1-201ENST00000393368 GAS2L2Q8NHY3 880 aa10.24□□□□□ -0.77
HMGB3P1-201ENST00000393368 PRKRIP1Q9H875 184 aaPredicted RBP10.24□□□□□ -0.77
HMGB3P1-201ENST00000393368 MRC1P22897 1456 aa10.23□□□□□ -0.77
HMGB3P1-201ENST00000393368 IL17REQ8NFR9 667 aa10.23□□□□□ -0.77
HMGB3P1-201ENST00000393368 SLC52A2Q9HAB3 445 aa10.23□□□□□ -0.77
HMGB3P1-201ENST00000393368 TUBGCP6Q96RT7 1819 aa10.23□□□□□ -0.77
HMGB3P1-201ENST00000393368 C4BP0C0L5 1744 aa10.22□□□□□ -0.77
HMGB3P1-201ENST00000393368 SCN11AQ9UI33 1791 aa10.22□□□□□ -0.77
HMGB3P1-201ENST00000393368 GNAT3A8MTJ3 354 aa10.22□□□□□ -0.77
HMGB3P1-201ENST00000393368 FCHSD2O94868 740 aa10.22□□□□□ -0.77
HMGB3P1-201ENST00000393368 PHF14O94880 888 aa10.22□□□□□ -0.77
HMGB3P1-201ENST00000393368 DCTN1Q14203 1278 aa10.22□□□□□ -0.77
HMGB3P1-201ENST00000393368 SPON1Q9HCB6 807 aa10.22□□□□□ -0.77
HMGB3P1-201ENST00000393368 ADAMTS7Q9UKP4 1686 aa10.22□□□□□ -0.77
HMGB3P1-201ENST00000393368 PTGER2P43116 358 aa10.21□□□□□ -0.77
HMGB3P1-201ENST00000393368 MCM10Q7L590 875 aa10.21□□□□□ -0.77
HMGB3P1-201ENST00000393368 COL23A1Q86Y22 540 aaPredicted RBP10.21□□□□□ -0.77
HMGB3P1-201ENST00000393368 AK7Q96M32 723 aa10.21□□□□□ -0.77
HMGB3P1-201ENST00000393368 PLEKHF1Q96S99 279 aa10.21□□□□□ -0.77
HMGB3P1-201ENST00000393368 GNPATO15228 680 aa10.2□□□□□ -0.78
HMGB3P1-201ENST00000393368 MSL1Q68DK7 614 aa10.2□□□□□ -0.78
HMGB3P1-201ENST00000393368 KCPQ6ZWJ8 1503 aa10.2□□□□□ -0.78
HMGB3P1-201ENST00000393368 CCDC146Q8IYE0 955 aa10.2□□□□□ -0.78
HMGB3P1-201ENST00000393368 TAF1LQ8IZX4 1826 aa10.2□□□□□ -0.78
HMGB3P1-201ENST00000393368 MTFR1LQ9H019 292 aa10.2□□□□□ -0.78
HMGB3P1-201ENST00000393368 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP10.19□□□□□ -0.78
HMGB3P1-201ENST00000393368 KCNQ3O43525 872 aa10.19□□□□□ -0.78
HMGB3P1-201ENST00000393368 TEFQ10587 303 aa10.19□□□□□ -0.78
HMGB3P1-201ENST00000393368 CCDC184Q52MB2 194 aa10.19□□□□□ -0.78
HMGB3P1-201ENST00000393368 DNAJC10Q8IXB1 793 aa10.19□□□□□ -0.78
HMGB3P1-201ENST00000393368 THUMPD2Q9BTF0 503 aaKnown RBP10.19□□□□□ -0.78
HMGB3P1-201ENST00000393368 PPP1R1BQ9UD71 204 aaPredicted RBP10.19□□□□□ -0.78
HMGB3P1-201ENST00000393368 TJP1Q07157 1748 aa10.19□□□□□ -0.78
HMGB3P1-201ENST00000393368 CEMIPQ8WUJ3 1361 aa10.18□□□□□ -0.78
HMGB3P1-201ENST00000393368 MAPK8IP3Q9UPT6 1336 aa10.18□□□□□ -0.78
HMGB3P1-201ENST00000393368 SGIP1Q9BQI5 828 aa10.18□□□□□ -0.78
HMGB3P1-201ENST00000393368 RRP7AQ9Y3A4 280 aaKnown RBP10.18□□□□□ -0.78
HMGB3P1-201ENST00000393368 QSER1Q2KHR3 1735 aa10.18□□□□□ -0.78
HMGB3P1-201ENST00000393368 VIRMAQ69YN4 1812 aaKnown RBP10.17□□□□□ -0.78
HMGB3P1-201ENST00000393368 COL5A3P25940 1745 aaPredicted RBP10.17□□□□□ -0.78
HMGB3P1-201ENST00000393368 WDR43Q15061 677 aaKnown RBP eCLIP10.17□□□□□ -0.78
HMGB3P1-201ENST00000393368 NFE2L2Q16236 605 aa10.17□□□□□ -0.78
HMGB3P1-201ENST00000393368 RTF1Q92541 710 aaKnown RBP10.17□□□□□ -0.78
HMGB3P1-201ENST00000393368 MIS18AQ9NYP9 233 aa10.17□□□□□ -0.78
HMGB3P1-201ENST00000393368 ADAMTS8Q9UP79 889 aa10.17□□□□□ -0.78
HMGB3P1-201ENST00000393368 CNTNAP4Q9C0A0 1308 aa10.16□□□□□ -0.78
HMGB3P1-201ENST00000393368 SENP3-EIF4A1A0A087X0R7 540 aa10.16□□□□□ -0.78
HMGB3P1-201ENST00000393368 BTBD11A6QL63 1104 aa10.16□□□□□ -0.78
HMGB3P1-201ENST00000393368 NEFMP07197 916 aa10.16□□□□□ -0.78
HMGB3P1-201ENST00000393368 CRKLP46109 303 aaKnown RBP10.16□□□□□ -0.78
HMGB3P1-201ENST00000393368 ZNF790Q6PG37 636 aa10.16□□□□□ -0.78
HMGB3P1-201ENST00000393368 TTC5Q8N0Z6 440 aa10.16□□□□□ -0.78
HMGB3P1-201ENST00000393368 KLHL34Q8N239 644 aa10.16□□□□□ -0.78
HMGB3P1-201ENST00000393368 ZNF496Q96IT1 587 aaPredicted RBP10.16□□□□□ -0.78
HMGB3P1-201ENST00000393368 UBR3Q6ZT12 1888 aa10.16□□□□□ -0.78
HMGB3P1-201ENST00000393368 SIPA1L3O60292 1781 aaPredicted RBP10.16□□□□□ -0.78
HMGB3P1-201ENST00000393368 PRAMEF22A3QJZ6 481 aa10.15□□□□□ -0.78
HMGB3P1-201ENST00000393368 SSFA2P28290 1259 aa10.15□□□□□ -0.78
HMGB3P1-201ENST00000393368 NEUROD2Q15784 382 aa10.15□□□□□ -0.78
HMGB3P1-201ENST00000393368 INTS5Q6P9B9 1019 aaKnown RBP10.15□□□□□ -0.78
HMGB3P1-201ENST00000393368 SLC16A10Q8TF71 515 aa10.15□□□□□ -0.78
HMGB3P1-201ENST00000393368 ARXQ96QS3 562 aa10.15□□□□□ -0.78
HMGB3P1-201ENST00000393368 FHDC1Q9C0D6 1143 aaPredicted RBP10.15□□□□□ -0.78
HMGB3P1-201ENST00000393368 RTCBQ9Y3I0 505 aaKnown RBP10.15□□□□□ -0.78
HMGB3P1-201ENST00000393368 ZNF831Q5JPB2 1677 aa10.15□□□□□ -0.79
HMGB3P1-201ENST00000393368 UBR2Q8IWV8 1755 aa10.14□□□□□ -0.79
HMGB3P1-201ENST00000393368 ANP32CO43423 234 aa10.14□□□□□ -0.79
HMGB3P1-201ENST00000393368 CYP19A1P11511 503 aaPredicted RBP10.14□□□□□ -0.79
HMGB3P1-201ENST00000393368 RIPK4P57078 832 aa10.14□□□□□ -0.79
HMGB3P1-201ENST00000393368 SPINK5Q9NQ38 1064 aaPredicted RBP10.14□□□□□ -0.79
HMGB3P1-201ENST00000393368 ZBTB1Q9Y2K1 713 aa10.14□□□□□ -0.79
HMGB3P1-201ENST00000393368 CICQ96RK0 1608 aaPredicted RBP10.14□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 42.5 ms