RNA–Protein interactions for RNA: ENST00000393310.5

LIMS1-203, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMS1, Length 4,392 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-203ENST00000393310 ANP32AP39687 249 aaKnown RBP10.24□□□□□ -0.77
LIMS1-203ENST00000393310 C2orf69Q8N8R5 385 aa10.24□□□□□ -0.77
LIMS1-203ENST00000393310 GJA3Q9Y6H8 435 aa10.24□□□□□ -0.77
LIMS1-203ENST00000393310 LMTK2Q8IWU2 1503 aa10.24□□□□□ -0.77
LIMS1-203ENST00000393310 SAMD1Q6SPF0 538 aaPredicted RBP10.24□□□□□ -0.77
LIMS1-203ENST00000393310 C2CD5Q86YS7 1000 aa10.24□□□□□ -0.77
LIMS1-203ENST00000393310 IP6K1Q92551 441 aa10.24□□□□□ -0.77
LIMS1-203ENST00000393310 NOL10Q9BSC4 688 aaKnown RBP10.24□□□□□ -0.77
LIMS1-203ENST00000393310 TNIP1Q15025 636 aa10.23□□□□□ -0.77
LIMS1-203ENST00000393310 NBPF1Q3BBV0 1214 aa10.23□□□□□ -0.77
LIMS1-203ENST00000393310 ERFEQ4G0M1 354 aa10.23□□□□□ -0.77
LIMS1-203ENST00000393310 BIN2Q9UBW5 565 aaPredicted RBP10.23□□□□□ -0.77
LIMS1-203ENST00000393310 CFAP65Q6ZU64 1925 aaKnown RBP10.23□□□□□ -0.77
LIMS1-203ENST00000393310 PLXNC1O60486 1568 aa10.23□□□□□ -0.77
LIMS1-203ENST00000393310 DDX58O95786 925 aaKnown RBP10.23□□□□□ -0.77
LIMS1-203ENST00000393310 RTKN2Q8IZC4 609 aa10.23□□□□□ -0.77
LIMS1-203ENST00000393310 OGFOD1Q8N543 542 aa10.23□□□□□ -0.77
LIMS1-203ENST00000393310 CCDC93Q567U6 631 aa10.22□□□□□ -0.77
LIMS1-203ENST00000393310 POLR1AO95602 1720 aaPredicted RBP10.22□□□□□ -0.77
LIMS1-203ENST00000393310 ZNF142P52746 1687 aaPredicted RBP10.22□□□□□ -0.77
LIMS1-203ENST00000393310 ROBO2Q9HCK4 1378 aa10.22□□□□□ -0.77
LIMS1-203ENST00000393310 AKAP4Q5JQC9 854 aa10.22□□□□□ -0.77
LIMS1-203ENST00000393310 LARGE2Q8N3Y3 721 aa10.22□□□□□ -0.77
LIMS1-203ENST00000393310 TAOK3Q9H2K8 898 aa10.22□□□□□ -0.77
LIMS1-203ENST00000393310 ZNF408Q9H9D4 720 aa10.22□□□□□ -0.77
LIMS1-203ENST00000393310 PRDM10Q9NQV6 1147 aa10.22□□□□□ -0.77
LIMS1-203ENST00000393310 NEXNQ0ZGT2 675 aa10.21□□□□□ -0.77
LIMS1-203ENST00000393310 CNBD1Q8NA66 436 aa10.21□□□□□ -0.77
LIMS1-203ENST00000393310 CAMKK2Q96RR4 588 aa10.21□□□□□ -0.77
LIMS1-203ENST00000393310 MMP10P09238 476 aa10.21□□□□□ -0.77
LIMS1-203ENST00000393310 LMNB1P20700 586 aa10.21□□□□□ -0.77
LIMS1-203ENST00000393310 PPP1R42Q7Z4L9 355 aa10.21□□□□□ -0.77
LIMS1-203ENST00000393310 REM2Q8IYK8 340 aaPredicted RBP10.21□□□□□ -0.77
LIMS1-203ENST00000393310 DCPSQ96C86 337 aaKnown RBP10.21□□□□□ -0.77
LIMS1-203ENST00000393310 IGSF1Q8N6C5 1336 aa10.21□□□□□ -0.77
LIMS1-203ENST00000393310 FAM193AP78312 1265 aa10.21□□□□□ -0.78
LIMS1-203ENST00000393310 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP10.21□□□□□ -0.78
LIMS1-203ENST00000393310 C9orf131Q5VYM1 1079 aa10.21□□□□□ -0.78
LIMS1-203ENST00000393310 USP6P35125 1406 aa10.2□□□□□ -0.78
LIMS1-203ENST00000393310 SSH2Q76I76 1423 aa10.2□□□□□ -0.78
LIMS1-203ENST00000393310 PUS7Q96PZ0 661 aaKnown RBP10.2□□□□□ -0.78
LIMS1-203ENST00000393310 ROBO1Q9Y6N7 1651 aa10.2□□□□□ -0.78
LIMS1-203ENST00000393310 PTCD1O75127 700 aaKnown RBP10.2□□□□□ -0.78
LIMS1-203ENST00000393310 MLLT1Q03111 559 aaPredicted RBP10.2□□□□□ -0.78
LIMS1-203ENST00000393310 SULF1Q8IWU6 871 aa10.2□□□□□ -0.78
LIMS1-203ENST00000393310 ZC3H4Q9UPT8 1303 aaKnown RBP10.19□□□□□ -0.78
LIMS1-203ENST00000393310 DCAF5Q96JK2 942 aa10.19□□□□□ -0.78
LIMS1-203ENST00000393310 DDX46Q7L014 1031 aaKnown RBP10.19□□□□□ -0.78
LIMS1-203ENST00000393310 RBM17Q96I25 401 aaKnown RBP10.19□□□□□ -0.78
LIMS1-203ENST00000393310 HACL1Q9UJ83 578 aa10.19□□□□□ -0.78
LIMS1-203ENST00000393310 CTDP1Q9Y5B0 961 aaPredicted RBP10.19□□□□□ -0.78
LIMS1-203ENST00000393310 CNPY4Q8N129 248 aa10.18□□□□□ -0.78
LIMS1-203ENST00000393310 CLGNO14967 610 aa10.18□□□□□ -0.78
LIMS1-203ENST00000393310 TICAM2Q86XR7 235 aa10.18□□□□□ -0.78
LIMS1-203ENST00000393310 STK31Q9BXU1 1019 aa10.18□□□□□ -0.78
LIMS1-203ENST00000393310 NR2E3Q9Y5X4 410 aa10.18□□□□□ -0.78
LIMS1-203ENST00000393310 ONECUT3O60422 494 aaPredicted RBP10.17□□□□□ -0.78
LIMS1-203ENST00000393310 CHMP4BQ9H444 224 aaKnown RBP10.17□□□□□ -0.78
LIMS1-203ENST00000393310 AHDC1Q5TGY3 1603 aaPredicted RBP10.17□□□□□ -0.78
LIMS1-203ENST00000393310 CHADLQ6NUI6 762 aa10.17□□□□□ -0.78
LIMS1-203ENST00000393310 VPS37DQ86XT2 251 aa10.17□□□□□ -0.78
LIMS1-203ENST00000393310 FMNL2Q96PY5 1086 aa10.17□□□□□ -0.78
LIMS1-203ENST00000393310 NLRP3Q96P20 1036 aa10.16□□□□□ -0.78
LIMS1-203ENST00000393310 ADAMTS13Q76LX8 1427 aa10.16□□□□□ -0.78
LIMS1-203ENST00000393310 HOXD10P28358 340 aa10.16□□□□□ -0.78
LIMS1-203ENST00000393310 DEFB115Q30KQ5 88 aa10.16□□□□□ -0.78
LIMS1-203ENST00000393310 LOC102724428A0A0B4J2F2 783 aa10.15□□□□□ -0.78
LIMS1-203ENST00000393310 ERVV-2B6SEH9 535 aa10.15□□□□□ -0.78
LIMS1-203ENST00000393310 SIK1P57059 783 aa10.15□□□□□ -0.78
LIMS1-203ENST00000393310 USP19O94966 1318 aa10.15□□□□□ -0.78
LIMS1-203ENST00000393310 TNNT3P45378 269 aaPredicted RBP10.15□□□□□ -0.78
LIMS1-203ENST00000393310 TMC4Q7Z404 712 aa10.15□□□□□ -0.78
LIMS1-203ENST00000393310 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP10.15□□□□□ -0.78
LIMS1-203ENST00000393310 CDC42BPAQ5VT25 1732 aa10.15□□□□□ -0.78
LIMS1-203ENST00000393310 DIAPH1O60610 1272 aaKnown RBP10.15□□□□□ -0.78
LIMS1-203ENST00000393310 FTSJ3Q8IY81 847 aaKnown RBP10.14□□□□□ -0.79
LIMS1-203ENST00000393310 CC2D1BQ5T0F9 858 aaKnown RBP10.14□□□□□ -0.79
LIMS1-203ENST00000393310 RBM27Q9P2N5 1060 aaKnown RBP10.14□□□□□ -0.79
LIMS1-203ENST00000393310 CDC42BPBQ9Y5S2 1711 aa10.14□□□□□ -0.79
LIMS1-203ENST00000393310 ARMC9Q7Z3E5 817 aa10.14□□□□□ -0.79
LIMS1-203ENST00000393310 NBPF11Q86T75 865 aa10.14□□□□□ -0.79
LIMS1-203ENST00000393310 ARHGEF25Q86VW2 580 aa10.14□□□□□ -0.79
LIMS1-203ENST00000393310 PIK3C2BO00750 1634 aa10.14□□□□□ -0.79
LIMS1-203ENST00000393310 TET3O43151 1660 aa10.14□□□□□ -0.79
LIMS1-203ENST00000393310 C6orf229H3BNL8 230 aa10.14□□□□□ -0.79
LIMS1-203ENST00000393310 RRP9O43818 475 aaKnown RBP10.14□□□□□ -0.79
LIMS1-203ENST00000393310 FAM177BA6PVY3 158 aa10.13□□□□□ -0.79
LIMS1-203ENST00000393310 CCDC102AQ96A19 550 aa10.13□□□□□ -0.79
LIMS1-203ENST00000393310 NEURL4Q96JN8 1562 aa10.13□□□□□ -0.79
LIMS1-203ENST00000393310 TNNI2P48788 182 aa10.13□□□□□ -0.79
LIMS1-203ENST00000393310 RBM25P49756 843 aaKnown RBP10.13□□□□□ -0.79
LIMS1-203ENST00000393310 PRKAG2Q9UGJ0 569 aa10.13□□□□□ -0.79
LIMS1-203ENST00000393310 GGNBP2Q9H3C7 697 aa10.12□□□□□ -0.79
LIMS1-203ENST00000393310 RRAGCQ9HB90 399 aa10.12□□□□□ -0.79
LIMS1-203ENST00000393310 RPS6KA4O75676 772 aa10.12□□□□□ -0.79
LIMS1-203ENST00000393310 IPO4Q8TEX9 1081 aaKnown RBP10.12□□□□□ -0.79
LIMS1-203ENST00000393310 U2AF1L5P0DN76 240 aaPredicted RBP10.12□□□□□ -0.79
LIMS1-203ENST00000393310 U2AF1Q01081 240 aaKnown RBP eCLIP10.12□□□□□ -0.79
LIMS1-203ENST00000393310 SLC4A8Q2Y0W8 1093 aa10.12□□□□□ -0.79
LIMS1-203ENST00000393310 SMC4Q9NTJ3 1288 aa10.12□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 76.5 ms