RNA–Protein interactions for RNA: ENST00000389040.9

VPS53-202, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS53, Length 1,903 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-202ENST00000389040 SHANK3Q9BYB0 1731 aa13.26□□□□□ -0.29
VPS53-202ENST00000389040 KCNQ2O43526 872 aa13.26□□□□□ -0.29
VPS53-202ENST00000389040 CCDC27Q2M243 656 aa13.26□□□□□ -0.29
VPS53-202ENST00000389040 ACSBG1Q96GR2 724 aa13.26□□□□□ -0.29
VPS53-202ENST00000389040 BABAM1Q9NWV8 329 aa13.26□□□□□ -0.29
VPS53-202ENST00000389040 KDM6AO15550 1401 aaPredicted RBP13.26□□□□□ -0.29
VPS53-202ENST00000389040 CALD1Q05682 793 aaKnown RBP13.25□□□□□ -0.29
VPS53-202ENST00000389040 TEFQ10587 303 aa13.25□□□□□ -0.29
VPS53-202ENST00000389040 IL17REQ8NFR9 667 aa13.25□□□□□ -0.29
VPS53-202ENST00000389040 CDCA7LQ96GN5 454 aa13.25□□□□□ -0.29
VPS53-202ENST00000389040 CCDC146Q8IYE0 955 aa13.25□□□□□ -0.29
VPS53-202ENST00000389040 NFATC2IPQ8NCF5 419 aa13.25□□□□□ -0.29
VPS53-202ENST00000389040 PIGBQ92521 554 aa13.25□□□□□ -0.29
VPS53-202ENST00000389040 LGR6Q9HBX8 967 aa13.25□□□□□ -0.29
VPS53-202ENST00000389040 RCAN3Q9UKA8 241 aa13.25□□□□□ -0.29
VPS53-202ENST00000389040 APAF1O14727 1248 aa13.24□□□□□ -0.29
VPS53-202ENST00000389040 SLC27A3Q5K4L6 730 aa13.23□□□□□ -0.29
VPS53-202ENST00000389040 NHSQ6T4R5 1651 aa13.23□□□□□ -0.29
VPS53-202ENST00000389040 RRP1P56182 461 aaKnown RBP13.23□□□□□ -0.29
VPS53-202ENST00000389040 TAF7Q15545 349 aaPredicted RBP13.23□□□□□ -0.29
VPS53-202ENST00000389040 CAMKK2Q96RR4 588 aa13.23□□□□□ -0.29
VPS53-202ENST00000389040 MRC1P22897 1456 aa13.23□□□□□ -0.29
VPS53-202ENST00000389040 B4GALNT3Q6L9W6 998 aa13.22□□□□□ -0.29
VPS53-202ENST00000389040 ADAMTS7Q9UKP4 1686 aa13.22□□□□□ -0.29
VPS53-202ENST00000389040 MCM10Q7L590 875 aa13.21□□□□□ -0.3
VPS53-202ENST00000389040 ATG3Q9NT62 314 aa13.21□□□□□ -0.3
VPS53-202ENST00000389040 TRIM35Q9UPQ4 493 aa13.21□□□□□ -0.3
VPS53-202ENST00000389040 ZNF521Q96K83 1311 aa13.21□□□□□ -0.3
VPS53-202ENST00000389040 PTF1AQ7RTS3 328 aa13.2□□□□□ -0.3
VPS53-202ENST00000389040 VSIG10Q8N0Z9 540 aa13.19□□□□□ -0.3
VPS53-202ENST00000389040 SBF2Q86WG5 1849 aa13.19□□□□□ -0.3
VPS53-202ENST00000389040 BTBD11A6QL63 1104 aa13.19□□□□□ -0.3
VPS53-202ENST00000389040 EN1Q05925 392 aaPredicted RBP13.19□□□□□ -0.3
VPS53-202ENST00000389040 NEUROD2Q15784 382 aa13.19□□□□□ -0.3
VPS53-202ENST00000389040 TXNRD1Q16881 649 aa13.19□□□□□ -0.3
VPS53-202ENST00000389040 ZNF790Q6PG37 636 aa13.19□□□□□ -0.3
VPS53-202ENST00000389040 TTC5Q8N0Z6 440 aa13.19□□□□□ -0.3
VPS53-202ENST00000389040 ASAP1Q9ULH1 1129 aa13.19□□□□□ -0.3
VPS53-202ENST00000389040 PALLDQ8WX93 1383 aa13.19□□□□□ -0.3
VPS53-202ENST00000389040 WDR63Q8IWG1 891 aa13.18□□□□□ -0.3
VPS53-202ENST00000389040 TEX13AQ9BXU3 409 aaPredicted RBP13.18□□□□□ -0.3
VPS53-202ENST00000389040 RRP7AQ9Y3A4 280 aaKnown RBP13.18□□□□□ -0.3
VPS53-202ENST00000389040 IL16Q14005 1332 aa13.18□□□□□ -0.3
VPS53-202ENST00000389040 LOC102724428A0A0B4J2F2 783 aa13.17□□□□□ -0.3
VPS53-202ENST00000389040 RGPD3A6NKT7 1758 aaPredicted RBP13.17□□□□□ -0.3
VPS53-202ENST00000389040 SIK1P57059 783 aa13.17□□□□□ -0.3
VPS53-202ENST00000389040 GOLGA2Q08379 1002 aa13.17□□□□□ -0.3
VPS53-202ENST00000389040 DCTN1Q14203 1278 aa13.17□□□□□ -0.3
VPS53-202ENST00000389040 RGPD4Q7Z3J3 1758 aa13.17□□□□□ -0.3
VPS53-202ENST00000389040 DEFB132Q7Z7B7 95 aa13.17□□□□□ -0.3
VPS53-202ENST00000389040 WWC1Q8IX03 1113 aa13.17□□□□□ -0.3
VPS53-202ENST00000389040 DOT1LQ8TEK3 1739 aa13.17□□□□□ -0.3
VPS53-202ENST00000389040 CFAP44Q96MT7 982 aa13.17□□□□□ -0.3
VPS53-202ENST00000389040 SCN11AQ9UI33 1791 aa13.17□□□□□ -0.3
VPS53-202ENST00000389040 PROM2Q8N271 834 aa13.17□□□□□ -0.3
VPS53-202ENST00000389040 TNS1Q9HBL0 1735 aaKnown RBP13.16□□□□□ -0.3
VPS53-202ENST00000389040 GNAI1P63096 354 aa13.16□□□□□ -0.3
VPS53-202ENST00000389040 EZH2Q15910 746 aaKnown RBP13.16□□□□□ -0.3
VPS53-202ENST00000389040 IFT57Q9NWB7 429 aa13.16□□□□□ -0.3
VPS53-202ENST00000389040 CCNL1Q9UK58 526 aaPredicted RBP13.16□□□□□ -0.3
VPS53-202ENST00000389040 TOGARAM1Q9Y4F4 1720 aa13.16□□□□□ -0.3
VPS53-202ENST00000389040 CHL1O00533 1208 aa13.15□□□□□ -0.3
VPS53-202ENST00000389040 NBPF14Q5TI25 921 aa13.15□□□□□ -0.3
VPS53-202ENST00000389040 DUSP27Q5VZP5 1158 aa13.15□□□□□ -0.3
VPS53-202ENST00000389040 CCDC136Q96JN2 1154 aa13.15□□□□□ -0.3
VPS53-202ENST00000389040 FMNL2Q96PY5 1086 aa13.15□□□□□ -0.3
VPS53-202ENST00000389040 CHMP4AQ9BY43 222 aa13.15□□□□□ -0.3
VPS53-202ENST00000389040 BTAF1O14981 1849 aa13.14□□□□□ -0.31
VPS53-202ENST00000389040 ZNF853P0CG23 659 aa13.13□□□□□ -0.31
VPS53-202ENST00000389040 ATP6V1AP38606 617 aa13.13□□□□□ -0.31
VPS53-202ENST00000389040 SLFN5Q08AF3 891 aa13.13□□□□□ -0.31
VPS53-202ENST00000389040 RC3H1Q5TC82 1133 aaKnown RBP13.13□□□□□ -0.31
VPS53-202ENST00000389040 TSPYL4Q9UJ04 414 aa13.13□□□□□ -0.31
VPS53-202ENST00000389040 SOS1Q07889 1333 aaPredicted RBP13.13□□□□□ -0.31
VPS53-202ENST00000389040 PTCD1O75127 700 aaKnown RBP13.13□□□□□ -0.31
VPS53-202ENST00000389040 SLC39A6Q13433 755 aa13.13□□□□□ -0.31
VPS53-202ENST00000389040 TRMT2AQ8IZ69 625 aaKnown RBP13.13□□□□□ -0.31
VPS53-202ENST00000389040 RBM42Q9BTD8 480 aaKnown RBP13.13□□□□□ -0.31
VPS53-202ENST00000389040 THUMPD2Q9BTF0 503 aaKnown RBP13.13□□□□□ -0.31
VPS53-202ENST00000389040 ITGB4P16144 1822 aa13.12□□□□□ -0.31
VPS53-202ENST00000389040 STARD3NLO95772 234 aa13.12□□□□□ -0.31
VPS53-202ENST00000389040 SNRPA1P09661 255 aaKnown RBP13.12□□□□□ -0.31
VPS53-202ENST00000389040 ZNF496Q96IT1 587 aaPredicted RBP13.12□□□□□ -0.31
VPS53-202ENST00000389040 LRRC4BQ9NT99 713 aa13.12□□□□□ -0.31
VPS53-202ENST00000389040 RBM19Q9Y4C8 960 aaKnown RBP13.12□□□□□ -0.31
VPS53-202ENST00000389040 HEG1Q9ULI3 1381 aa13.12□□□□□ -0.31
VPS53-202ENST00000389040 ZNF831Q5JPB2 1677 aa13.12□□□□□ -0.31
VPS53-202ENST00000389040 HOXB7P09629 217 aa13.11□□□□□ -0.31
VPS53-202ENST00000389040 EIF4A1P60842 406 aaKnown RBP13.11□□□□□ -0.31
VPS53-202ENST00000389040 EXOC6Q8TAG9 804 aa13.11□□□□□ -0.31
VPS53-202ENST00000389040 E9PSI1 815 aa13.11□□□□□ -0.31
VPS53-202ENST00000389040 FLAD1Q8NFF5 587 aa13.11□□□□□ -0.31
VPS53-202ENST00000389040 MYH16Q9H6N6 1097 aa13.1□□□□□ -0.31
VPS53-202ENST00000389040 STK32BQ9NY57 414 aa13.1□□□□□ -0.31
VPS53-202ENST00000389040 CNTNAP4Q9C0A0 1308 aa13.1□□□□□ -0.31
VPS53-202ENST00000389040 SLC4A9Q96Q91 983 aa13.09□□□□□ -0.31
VPS53-202ENST00000389040 KCPQ6ZWJ8 1503 aa13.09□□□□□ -0.31
VPS53-202ENST00000389040 LY75O60449 1722 aa13.09□□□□□ -0.31
VPS53-202ENST00000389040 PLIN1O60240 522 aa13.09□□□□□ -0.31
VPS53-202ENST00000389040 GIGYF1O75420 1035 aaPredicted RBP13.09□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 46 ms