RNA–Protein interactions for RNA: ENST00000377797.7

TCOF1-202, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene TCOF1, Length 5,095 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-202ENST00000377797 SKOR2Q2VWA4 1001 aaPredicted RBP17.51■□□□□ 0.39
TCOF1-202ENST00000377797 CCDC158Q5M9N0 1113 aa17.51■□□□□ 0.39
TCOF1-202ENST00000377797 MAP3K4Q9Y6R4 1608 aa17.51■□□□□ 0.39
TCOF1-202ENST00000377797 SF3A1Q15459 793 aaKnown RBP17.51■□□□□ 0.39
TCOF1-202ENST00000377797 VPS37CA5D8V6 355 aaPredicted RBP17.5■□□□□ 0.39
TCOF1-202ENST00000377797 MCTP1Q6DN14 999 aa17.5■□□□□ 0.39
TCOF1-202ENST00000377797 SYNE3Q6ZMZ3 975 aa17.5■□□□□ 0.39
TCOF1-202ENST00000377797 CPLX1O14810 134 aa17.5■□□□□ 0.39
TCOF1-202ENST00000377797 TRPM1Q7Z4N2 1603 aa17.5■□□□□ 0.39
TCOF1-202ENST00000377797 A0A087WZG4 1122 aa17.5■□□□□ 0.39
TCOF1-202ENST00000377797 NGLY1Q96IV0 654 aa17.5■□□□□ 0.39
TCOF1-202ENST00000377797 SPHKAPQ2M3C7 1700 aa17.5■□□□□ 0.39
TCOF1-202ENST00000377797 ZBTB3Q9H5J0 574 aa17.5■□□□□ 0.39
TCOF1-202ENST00000377797 RALYLQ86SE5 291 aaKnown RBP17.49■□□□□ 0.39
TCOF1-202ENST00000377797 PSMA5P28066 241 aa17.49■□□□□ 0.39
TCOF1-202ENST00000377797 RNF123Q5XPI4 1314 aa17.49■□□□□ 0.39
TCOF1-202ENST00000377797 CWC27Q6UX04 472 aaKnown RBP17.49■□□□□ 0.39
TCOF1-202ENST00000377797 PPP1R42Q7Z4L9 355 aa17.49■□□□□ 0.39
TCOF1-202ENST00000377797 TBC1D2BQ9UPU7 963 aa17.49■□□□□ 0.39
TCOF1-202ENST00000377797 PRR36Q9H6K5 1346 aa17.48■□□□□ 0.39
TCOF1-202ENST00000377797 NFATC2IPQ8NCF5 419 aa17.48■□□□□ 0.39
TCOF1-202ENST00000377797 MPHOSPH8Q99549 860 aa17.48■□□□□ 0.39
TCOF1-202ENST00000377797 A2ML1A8K2U0 1454 aa17.48■□□□□ 0.39
TCOF1-202ENST00000377797 NLRP1Q9C000 1473 aa17.48■□□□□ 0.39
TCOF1-202ENST00000377797 ATP5J2-PTCD1G3V325 749 aa17.48■□□□□ 0.39
TCOF1-202ENST00000377797 GLRX3O76003 335 aaKnown RBP17.48■□□□□ 0.39
TCOF1-202ENST00000377797 MCM2P49736 904 aa17.48■□□□□ 0.39
TCOF1-202ENST00000377797 TTC39AQ5SRH9 613 aa17.48■□□□□ 0.39
TCOF1-202ENST00000377797 DRC7Q8IY82 874 aa17.48■□□□□ 0.39
TCOF1-202ENST00000377797 NOL10Q9BSC4 688 aaKnown RBP17.48■□□□□ 0.39
TCOF1-202ENST00000377797 BCORL1Q5H9F3 1711 aa17.48■□□□□ 0.39
TCOF1-202ENST00000377797 DDX17Q92841 729 aaKnown RBP17.48■□□□□ 0.39
TCOF1-202ENST00000377797 E9PCH4 1651 aa17.47■□□□□ 0.39
TCOF1-202ENST00000377797 ZBTB40Q9NUA8 1239 aa17.47■□□□□ 0.39
TCOF1-202ENST00000377797 GOLGA6L6A8MZA4 724 aa17.47■□□□□ 0.39
TCOF1-202ENST00000377797 CHL1O00533 1208 aa17.47■□□□□ 0.39
TCOF1-202ENST00000377797 NCBP3Q53F19 620 aaKnown RBP17.47■□□□□ 0.39
TCOF1-202ENST00000377797 KAT6BQ8WYB5 2073 aa17.47■□□□□ 0.39
TCOF1-202ENST00000377797 ANKRD44Q8N8A2 993 aa17.47■□□□□ 0.39
TCOF1-202ENST00000377797 BMP2KLQ5H9B9 411 aa17.46■□□□□ 0.39
TCOF1-202ENST00000377797 ANKRD13DQ6ZTN6 518 aa17.46■□□□□ 0.39
TCOF1-202ENST00000377797 MSNP26038 577 aaKnown RBP17.46■□□□□ 0.39
TCOF1-202ENST00000377797 NUCB1Q02818 461 aa17.46■□□□□ 0.39
TCOF1-202ENST00000377797 FKBP4Q02790 459 aaKnown RBP eCLIP17.46■□□□□ 0.38
TCOF1-202ENST00000377797 NBPF6Q5VWK0 638 aa17.46■□□□□ 0.38
TCOF1-202ENST00000377797 NBPF4Q96M43 638 aa17.46■□□□□ 0.38
TCOF1-202ENST00000377797 PHF14O94880 888 aa17.45■□□□□ 0.38
TCOF1-202ENST00000377797 AKAP17AQ02040 695 aaKnown RBP17.45■□□□□ 0.38
TCOF1-202ENST00000377797 COPS6Q7L5N1 327 aa17.45■□□□□ 0.38
TCOF1-202ENST00000377797 UBE3BQ7Z3V4 1068 aa17.45■□□□□ 0.38
TCOF1-202ENST00000377797 NRDCO43847 1150 aa17.45■□□□□ 0.38
TCOF1-202ENST00000377797 XAGE3Q8WTP9 111 aa17.45■□□□□ 0.38
TCOF1-202ENST00000377797 K7ELQ4 463 aaPredicted RBP17.45■□□□□ 0.38
TCOF1-202ENST00000377797 TULP1O00294 542 aaPredicted RBP17.45■□□□□ 0.38
TCOF1-202ENST00000377797 CCDC8Q9H0W5 538 aaPredicted RBP17.44■□□□□ 0.38
TCOF1-202ENST00000377797 RNMTO43148 476 aaKnown RBP17.44■□□□□ 0.38
TCOF1-202ENST00000377797 NFXL1Q6ZNB6 911 aa17.44■□□□□ 0.38
TCOF1-202ENST00000377797 BOLA2Q9H3K6 86 aa17.44■□□□□ 0.38
TCOF1-202ENST00000377797 ZSCAN21Q9Y5A6 473 aaPredicted RBP17.44■□□□□ 0.38
TCOF1-202ENST00000377797 FAM135BQ49AJ0 1406 aa17.43■□□□□ 0.38
TCOF1-202ENST00000377797 JARID2Q92833 1246 aaPredicted RBP17.43■□□□□ 0.38
TCOF1-202ENST00000377797 ATP7BP35670 1465 aa17.43■□□□□ 0.38
TCOF1-202ENST00000377797 IL2RBP14784 551 aa17.43■□□□□ 0.38
TCOF1-202ENST00000377797 BICDL1Q6ZP65 573 aa17.43■□□□□ 0.38
TCOF1-202ENST00000377797 INO80Q9ULG1 1556 aaPredicted RBP17.43■□□□□ 0.38
TCOF1-202ENST00000377797 PIP4K2AP48426 406 aaPredicted RBP17.43■□□□□ 0.38
TCOF1-202ENST00000377797 AMOTL1Q8IY63 956 aa17.43■□□□□ 0.38
TCOF1-202ENST00000377797 G2E3Q7L622 706 aa17.43■□□□□ 0.38
TCOF1-202ENST00000377797 TEX13AQ9BXU3 409 aaPredicted RBP17.43■□□□□ 0.38
TCOF1-202ENST00000377797 LMTK2Q8IWU2 1503 aa17.42■□□□□ 0.38
TCOF1-202ENST00000377797 LGR6Q9HBX8 967 aa17.42■□□□□ 0.38
TCOF1-202ENST00000377797 TOM1O60784 492 aa17.42■□□□□ 0.38
TCOF1-202ENST00000377797 GPTP24298 496 aa17.42■□□□□ 0.38
TCOF1-202ENST00000377797 TSHZ3Q63HK5 1081 aa17.42■□□□□ 0.38
TCOF1-202ENST00000377797 KSR2Q6VAB6 950 aa17.42■□□□□ 0.38
TCOF1-202ENST00000377797 FBXW7Q969H0 707 aa17.42■□□□□ 0.38
TCOF1-202ENST00000377797 PLEKHF1Q96S99 279 aa17.42■□□□□ 0.38
TCOF1-202ENST00000377797 CYP46A1Q9Y6A2 500 aa17.42■□□□□ 0.38
TCOF1-202ENST00000377797 DCAF5Q96JK2 942 aa17.42■□□□□ 0.38
TCOF1-202ENST00000377797 NAP1L5Q96NT1 182 aaPredicted RBP17.42■□□□□ 0.38
TCOF1-202ENST00000377797 TBC1D9Q6ZT07 1266 aa17.41■□□□□ 0.38
TCOF1-202ENST00000377797 CEP152O94986 1710 aa17.41■□□□□ 0.38
TCOF1-202ENST00000377797 PHAXQ9H814 394 aaKnown RBP17.41■□□□□ 0.38
TCOF1-202ENST00000377797 AATKQ6ZMQ8 1374 aa17.41■□□□□ 0.38
TCOF1-202ENST00000377797 FOSBP53539 338 aa17.41■□□□□ 0.38
TCOF1-202ENST00000377797 ZBTB7BO15156 539 aaPredicted RBP17.41■□□□□ 0.38
TCOF1-202ENST00000377797 SMC5Q8IY18 1101 aa17.4■□□□□ 0.38
TCOF1-202ENST00000377797 CCDC34Q96HJ3 373 aa17.4■□□□□ 0.38
TCOF1-202ENST00000377797 DDX24Q9GZR7 859 aaKnown RBP eCLIP17.4■□□□□ 0.381e-6■■■□□ 16.8
TCOF1-202ENST00000377797 MADDQ8WXG6 1647 aa17.4■□□□□ 0.38
TCOF1-202ENST00000377797 ERICH2A1L162 156 aa17.4■□□□□ 0.38
TCOF1-202ENST00000377797 UBAP1LF5GYI3 381 aa17.4■□□□□ 0.38
TCOF1-202ENST00000377797 CDK11BP21127 795 aaKnown RBP17.4■□□□□ 0.38
TCOF1-202ENST00000377797 METTL24Q5JXM2 366 aa17.4■□□□□ 0.38
TCOF1-202ENST00000377797 SLAIN2Q9P270 581 aa17.4■□□□□ 0.38
TCOF1-202ENST00000377797 TRMT112Q9UI30 125 aaKnown RBP17.4■□□□□ 0.38
TCOF1-202ENST00000377797 ADGRB3O60242 1522 aa17.4■□□□□ 0.38
TCOF1-202ENST00000377797 TRIM29Q14134 588 aa17.4■□□□□ 0.38
TCOF1-202ENST00000377797 HSP90AB3PQ58FF7 597 aa17.39■□□□□ 0.37
TCOF1-202ENST00000377797 CWC25Q9NXE8 425 aaPredicted RBP17.39■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 48.4 ms