RNA–Protein interactions for RNA: ENST00000375340.10

SMC1A-202, Transcript of structural maintenance of chromosomes 1A, humanhuman

TSL 1 (best) BASIC

Gene SMC1A, Length 9,930 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1A-202ENST00000375340 FAM177A1Q8N128 213 aaPredicted RBP7.77□□□□□ -1.17
SMC1A-202ENST00000375340 CCDC34Q96HJ3 373 aa7.77□□□□□ -1.17
SMC1A-202ENST00000375340 MEIS3Q99687 375 aa7.77□□□□□ -1.17
SMC1A-202ENST00000375340 KRT85P78386 507 aa7.77□□□□□ -1.17
SMC1A-202ENST00000375340 RRP12Q5JTH9 1297 aaKnown RBP7.77□□□□□ -1.17
SMC1A-202ENST00000375340 ZNF396Q96N95 335 aaPredicted RBP7.77□□□□□ -1.17
SMC1A-202ENST00000375340 TMX1Q9H3N1 280 aa7.77□□□□□ -1.17
SMC1A-202ENST00000375340 ADCY5O95622 1261 aa7.77□□□□□ -1.17
SMC1A-202ENST00000375340 ATP2B1P20020 1258 aa7.77□□□□□ -1.17
SMC1A-202ENST00000375340 RAB3GAP1Q15042 981 aa7.77□□□□□ -1.17
SMC1A-202ENST00000375340 ZNF692Q9BU19 519 aaPredicted RBP7.77□□□□□ -1.17
SMC1A-202ENST00000375340 STK38Q15208 465 aa7.77□□□□□ -1.17
SMC1A-202ENST00000375340 ABCC2Q92887 1545 aa7.77□□□□□ -1.17
SMC1A-202ENST00000375340 TEX35Q5T0J7 233 aa7.77□□□□□ -1.17
SMC1A-202ENST00000375340 MTERF4Q7Z6M4 381 aaKnown RBP7.77□□□□□ -1.17
SMC1A-202ENST00000375340 IL16Q14005 1332 aa7.77□□□□□ -1.17
SMC1A-202ENST00000375340 WASLO00401 505 aaPredicted RBP7.77□□□□□ -1.17
SMC1A-202ENST00000375340 ERICH4A6NGS2 130 aa7.76□□□□□ -1.17
SMC1A-202ENST00000375340 TPM1P09493 284 aa7.76□□□□□ -1.17
SMC1A-202ENST00000375340 WDR7Q9Y4E6 1490 aa7.76□□□□□ -1.17
SMC1A-202ENST00000375340 CHD1O14646 1710 aa7.76□□□□□ -1.17
SMC1A-202ENST00000375340 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP7.76□□□□□ -1.174e-6■■□□□ 14.1
SMC1A-202ENST00000375340 OTUD7AQ8TE49 926 aaPredicted RBP7.76□□□□□ -1.17
SMC1A-202ENST00000375340 CCDC85AQ96PX6 553 aaPredicted RBP7.76□□□□□ -1.17
SMC1A-202ENST00000375340 RBM33Q96EV2 1170 aaKnown RBP7.76□□□□□ -1.17
SMC1A-202ENST00000375340 TMX3Q96JJ7 454 aa7.76□□□□□ -1.17
SMC1A-202ENST00000375340 PHACTR3Q96KR7 559 aa7.76□□□□□ -1.17
SMC1A-202ENST00000375340 BOLA2Q9H3K6 86 aa7.76□□□□□ -1.17
SMC1A-202ENST00000375340 SPDYE4A6NLX3 237 aa7.76□□□□□ -1.17
SMC1A-202ENST00000375340 RAD21O60216 631 aa7.76□□□□□ -1.17
SMC1A-202ENST00000375340 BRPF1P55201 1214 aaPredicted RBP7.76□□□□□ -1.17
SMC1A-202ENST00000375340 MAP3K11Q16584 847 aa7.76□□□□□ -1.17
SMC1A-202ENST00000375340 HOOK1Q9UJC3 728 aaKnown RBP7.76□□□□□ -1.17
SMC1A-202ENST00000375340 DENND4BO75064 1496 aaPredicted RBP7.76□□□□□ -1.17
SMC1A-202ENST00000375340 CCDC8Q9H0W5 538 aaPredicted RBP7.76□□□□□ -1.17
SMC1A-202ENST00000375340 PLXNC1O60486 1568 aa7.76□□□□□ -1.17
SMC1A-202ENST00000375340 PTPRCP08575 1304 aa7.76□□□□□ -1.17
SMC1A-202ENST00000375340 PRIM1P49642 420 aaKnown RBP7.76□□□□□ -1.17
SMC1A-202ENST00000375340 BLOC1S2Q6QNY1 142 aa7.76□□□□□ -1.17
SMC1A-202ENST00000375340 TSR1Q2NL82 804 aaKnown RBP7.75□□□□□ -1.17
SMC1A-202ENST00000375340 LRRFIP1Q32MZ4 808 aaKnown RBP7.75□□□□□ -1.17
SMC1A-202ENST00000375340 ASXL2Q76L83 1435 aa7.75□□□□□ -1.17
SMC1A-202ENST00000375340 ADCY10Q96PN6 1610 aa7.75□□□□□ -1.17
SMC1A-202ENST00000375340 ERICH2A1L162 156 aa7.75□□□□□ -1.17
SMC1A-202ENST00000375340 FKBP4Q02790 459 aaKnown RBP eCLIP7.75□□□□□ -1.17
SMC1A-202ENST00000375340 USP48Q86UV5 1035 aa7.75□□□□□ -1.17
SMC1A-202ENST00000375340 JARID2Q92833 1246 aaPredicted RBP7.75□□□□□ -1.17
SMC1A-202ENST00000375340 GUCY1B3Q02153 619 aa7.75□□□□□ -1.17
SMC1A-202ENST00000375340 KLHL40Q2TBA0 621 aa7.75□□□□□ -1.17
SMC1A-202ENST00000375340 PDCP20941 246 aa7.75□□□□□ -1.17
SMC1A-202ENST00000375340 MPRIPQ6WCQ1 1025 aa7.75□□□□□ -1.17
SMC1A-202ENST00000375340 CCDC112Q8NEF3 446 aa7.75□□□□□ -1.17
SMC1A-202ENST00000375340 ANKRD1Q15327 319 aa7.75□□□□□ -1.17
SMC1A-202ENST00000375340 ZBTB40Q9NUA8 1239 aa7.75□□□□□ -1.17
SMC1A-202ENST00000375340 HMGN5P82970 282 aaKnown RBP7.75□□□□□ -1.17
SMC1A-202ENST00000375340 SNX21Q969T3 373 aa7.75□□□□□ -1.17
SMC1A-202ENST00000375340 SERPINC1P01008 464 aa7.75□□□□□ -1.17
SMC1A-202ENST00000375340 FLIIQ13045 1269 aa7.75□□□□□ -1.17
SMC1A-202ENST00000375340 MAPK8IP2Q13387 824 aaPredicted RBP7.75□□□□□ -1.17
SMC1A-202ENST00000375340 GIMAP6Q6P9H5 292 aa7.75□□□□□ -1.17
SMC1A-202ENST00000375340 LRSAM1Q6UWE0 723 aa7.75□□□□□ -1.17
SMC1A-202ENST00000375340 VPS37DQ86XT2 251 aa7.75□□□□□ -1.17
SMC1A-202ENST00000375340 MARCH6O60337 910 aa7.75□□□□□ -1.17
SMC1A-202ENST00000375340 UBE2Q2Q8WVN8 375 aa7.75□□□□□ -1.17
SMC1A-202ENST00000375340 TAF7Q15545 349 aaPredicted RBP7.74□□□□□ -1.17
SMC1A-202ENST00000375340 SPHKAPQ2M3C7 1700 aa7.74□□□□□ -1.17
SMC1A-202ENST00000375340 GTF2E1P29083 439 aaPredicted RBP7.74□□□□□ -1.17
SMC1A-202ENST00000375340 ZSCAN31Q96LW9 406 aaPredicted RBP7.74□□□□□ -1.17
SMC1A-202ENST00000375340 ARGLU1Q9NWB6 273 aaPredicted RBP7.74□□□□□ -1.17
SMC1A-202ENST00000375340 PPP4R3BQ5MIZ7 849 aa7.74□□□□□ -1.17
SMC1A-202ENST00000375340 NECAB1Q8N987 351 aa7.74□□□□□ -1.17
SMC1A-202ENST00000375340 MYD88Q99836 296 aa7.74□□□□□ -1.17
SMC1A-202ENST00000375340 PLEKHM2Q8IWE5 1019 aa7.74□□□□□ -1.17
SMC1A-202ENST00000375340 PDCL2Q8N4E4 241 aa7.74□□□□□ -1.17
SMC1A-202ENST00000375340 ZHX1Q9UKY1 873 aaPredicted RBP7.74□□□□□ -1.17
SMC1A-202ENST00000375340 NCKAP5LQ9HCH0 1330 aa7.74□□□□□ -1.17
SMC1A-202ENST00000375340 RAB11FIP3O75154 756 aa7.74□□□□□ -1.17
SMC1A-202ENST00000375340 ANXA1P04083 346 aa7.74□□□□□ -1.17
SMC1A-202ENST00000375340 C16orf45Q96MC5 204 aaPredicted RBP7.74□□□□□ -1.17
SMC1A-202ENST00000375340 DTNBO60941 627 aa7.74□□□□□ -1.17
SMC1A-202ENST00000375340 CLIP2Q9UDT6 1046 aa7.74□□□□□ -1.17
SMC1A-202ENST00000375340 MAP3K2Q9Y2U5 619 aa7.74□□□□□ -1.17
SMC1A-202ENST00000375340 RAB11FIP4Q86YS3 637 aa7.74□□□□□ -1.17
SMC1A-202ENST00000375340 KIF1BPQ96EK5 621 aa7.74□□□□□ -1.17
SMC1A-202ENST00000375340 TRIM35Q9UPQ4 493 aa7.74□□□□□ -1.17
SMC1A-202ENST00000375340 QRICH2Q9H0J4 1663 aa7.74□□□□□ -1.17
SMC1A-202ENST00000375340 FOXO3O43524 673 aa7.73□□□□□ -1.17
SMC1A-202ENST00000375340 STX6O43752 255 aa7.73□□□□□ -1.17
SMC1A-202ENST00000375340 CLCN1P35523 988 aa7.73□□□□□ -1.17
SMC1A-202ENST00000375340 CHMP4CQ96CF2 233 aa7.73□□□□□ -1.17
SMC1A-202ENST00000375340 FILIP1Q7Z7B0 1213 aa7.73□□□□□ -1.17
SMC1A-202ENST00000375340 SMC5Q8IY18 1101 aa7.73□□□□□ -1.17
SMC1A-202ENST00000375340 CABP4P57796 275 aa7.73□□□□□ -1.17
SMC1A-202ENST00000375340 SAFBQ15424 915 aaKnown RBP eCLIP7.73□□□□□ -1.17
SMC1A-202ENST00000375340 CPLX2Q6PUV4 134 aaKnown RBP7.73□□□□□ -1.17
SMC1A-202ENST00000375340 CLTCL1P53675 1640 aa7.73□□□□□ -1.17
SMC1A-202ENST00000375340 SKIDA1Q1XH10 827 aa7.73□□□□□ -1.17
SMC1A-202ENST00000375340 ABCA8O94911 1581 aa7.73□□□□□ -1.17
SMC1A-202ENST00000375340 CDC42BPBQ9Y5S2 1711 aa7.73□□□□□ -1.17
SMC1A-202ENST00000375340 ZCCHC11Q5TAX3 1644 aaKnown RBP7.73□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms