RNA–Protein interactions for RNA: ENST00000374116.3

HMGA1-203, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene HMGA1, Length 1,848 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-203ENST00000374116 PLIN1O60240 522 aa18.37■□□□□ 0.53
HMGA1-203ENST00000374116 PRIM1P49642 420 aaKnown RBP18.37■□□□□ 0.53
HMGA1-203ENST00000374116 AKAP4Q5JQC9 854 aa18.37■□□□□ 0.53
HMGA1-203ENST00000374116 GAS2L2Q8NHY3 880 aa18.37■□□□□ 0.53
HMGA1-203ENST00000374116 DOT1LQ8TEK3 1739 aa18.37■□□□□ 0.53
HMGA1-203ENST00000374116 TOGARAM1Q9Y4F4 1720 aa18.37■□□□□ 0.53
HMGA1-203ENST00000374116 MCM10Q7L590 875 aa18.37■□□□□ 0.53
HMGA1-203ENST00000374116 GOLGA6L2Q8N9W4 650 aaPredicted RBP18.37■□□□□ 0.53
HMGA1-203ENST00000374116 PNNQ9H307 717 aaKnown RBP18.37■□□□□ 0.53
HMGA1-203ENST00000374116 KDM6AO15550 1401 aaPredicted RBP18.37■□□□□ 0.53
HMGA1-203ENST00000374116 SBF2Q86WG5 1849 aa18.36■□□□□ 0.53
HMGA1-203ENST00000374116 TMPOP42166 694 aaKnown RBP18.36■□□□□ 0.53
HMGA1-203ENST00000374116 NFE2L2Q16236 605 aa18.36■□□□□ 0.53
HMGA1-203ENST00000374116 THUMPD2Q9BTF0 503 aaKnown RBP18.36■□□□□ 0.53
HMGA1-203ENST00000374116 GNAT3A8MTJ3 354 aa18.35■□□□□ 0.53
HMGA1-203ENST00000374116 RIPK4P57078 832 aa18.35■□□□□ 0.53
HMGA1-203ENST00000374116 VIRMAQ69YN4 1812 aaKnown RBP18.35■□□□□ 0.53
HMGA1-203ENST00000374116 MAP3K5Q99683 1374 aa18.35■□□□□ 0.53
HMGA1-203ENST00000374116 ANP32AP39687 249 aaKnown RBP18.35■□□□□ 0.53
HMGA1-203ENST00000374116 IL17REQ8NFR9 667 aa18.35■□□□□ 0.53
HMGA1-203ENST00000374116 UBE2Q2Q8WVN8 375 aa18.35■□□□□ 0.53
HMGA1-203ENST00000374116 CRBNQ96SW2 442 aa18.35■□□□□ 0.53
HMGA1-203ENST00000374116 NBR1Q14596 966 aa18.34■□□□□ 0.53
HMGA1-203ENST00000374116 NKX1-1Q15270 411 aaPredicted RBP18.34■□□□□ 0.53
HMGA1-203ENST00000374116 WDR63Q8IWG1 891 aa18.34■□□□□ 0.53
HMGA1-203ENST00000374116 RNMTO43148 476 aaKnown RBP18.33■□□□□ 0.53
HMGA1-203ENST00000374116 DCAF5Q96JK2 942 aa18.33■□□□□ 0.53
HMGA1-203ENST00000374116 ITGB4P16144 1822 aa18.32■□□□□ 0.52
HMGA1-203ENST00000374116 NFATC2IPQ8NCF5 419 aa18.32■□□□□ 0.52
HMGA1-203ENST00000374116 PLEKHG2Q9H7P9 1386 aa18.31■□□□□ 0.52
HMGA1-203ENST00000374116 SCN11AQ9UI33 1791 aa18.31■□□□□ 0.52
HMGA1-203ENST00000374116 RTF1Q92541 710 aaKnown RBP18.31■□□□□ 0.52
HMGA1-203ENST00000374116 PIGBQ92521 554 aa18.3■□□□□ 0.52
HMGA1-203ENST00000374116 TRIM35Q9UPQ4 493 aa18.3■□□□□ 0.52
HMGA1-203ENST00000374116 TCERG1O14776 1098 aaKnown RBP18.3■□□□□ 0.52
HMGA1-203ENST00000374116 HSP90AB1P08238 724 aaKnown RBP18.3■□□□□ 0.52
HMGA1-203ENST00000374116 CABP4P57796 275 aa18.3■□□□□ 0.52
HMGA1-203ENST00000374116 UPF1Q92900 1129 aaKnown RBP eCLIP18.3■□□□□ 0.527e-23■■■■□ 19.4
HMGA1-203ENST00000374116 APBA3O96018 575 aa18.28■□□□□ 0.52
HMGA1-203ENST00000374116 DEFB132Q7Z7B7 95 aa18.28■□□□□ 0.52
HMGA1-203ENST00000374116 TMOD3Q9NYL9 352 aa18.28■□□□□ 0.52
HMGA1-203ENST00000374116 MIS18AQ9NYP9 233 aa18.28■□□□□ 0.52
HMGA1-203ENST00000374116 NHSQ6T4R5 1651 aa18.28■□□□□ 0.52
HMGA1-203ENST00000374116 BCL9O00512 1426 aa18.28■□□□□ 0.52
HMGA1-203ENST00000374116 C20orf194Q5TEA3 1177 aa18.28■□□□□ 0.52
HMGA1-203ENST00000374116 BCL11BQ9C0K0 894 aaPredicted RBP18.28■□□□□ 0.52
HMGA1-203ENST00000374116 BTAF1O14981 1849 aa18.27■□□□□ 0.52
HMGA1-203ENST00000374116 KCNQ4P56696 695 aa18.27■□□□□ 0.52
HMGA1-203ENST00000374116 SLC39A6Q13433 755 aa18.27■□□□□ 0.52
HMGA1-203ENST00000374116 SLC52A2Q9HAB3 445 aa18.27■□□□□ 0.52
HMGA1-203ENST00000374116 ZBTB47Q9UFB7 747 aaPredicted RBP18.27■□□□□ 0.52
HMGA1-203ENST00000374116 ASAP1Q9ULH1 1129 aa18.27■□□□□ 0.52
HMGA1-203ENST00000374116 ERVV-2B6SEH9 535 aa18.26■□□□□ 0.51
HMGA1-203ENST00000374116 TNS1Q9HBL0 1735 aaKnown RBP18.26■□□□□ 0.51
HMGA1-203ENST00000374116 CEMIPQ8WUJ3 1361 aa18.26■□□□□ 0.51
HMGA1-203ENST00000374116 TEFQ10587 303 aa18.26■□□□□ 0.51
HMGA1-203ENST00000374116 ADAMTS7Q9UKP4 1686 aa18.25■□□□□ 0.51
HMGA1-203ENST00000374116 MS4A1P11836 297 aa18.25■□□□□ 0.51
HMGA1-203ENST00000374116 EN1Q05925 392 aaPredicted RBP18.25■□□□□ 0.51
HMGA1-203ENST00000374116 SF3B2Q13435 895 aaKnown RBP18.24■□□□□ 0.51
HMGA1-203ENST00000374116 LAS1LQ9Y4W2 734 aaKnown RBP18.24■□□□□ 0.51
HMGA1-203ENST00000374116 KCNQ3O43525 872 aa18.23■□□□□ 0.51
HMGA1-203ENST00000374116 HTATSF1O43719 755 aaKnown RBP18.23■□□□□ 0.51
HMGA1-203ENST00000374116 IL27Q8NEV9 243 aa18.23■□□□□ 0.51
HMGA1-203ENST00000374116 ATG3Q9NT62 314 aa18.23■□□□□ 0.51
HMGA1-203ENST00000374116 BTBD11A6QL63 1104 aa18.21■□□□□ 0.51
HMGA1-203ENST00000374116 PTCD1O75127 700 aaKnown RBP18.21■□□□□ 0.51
HMGA1-203ENST00000374116 BCAR3O75815 825 aa18.21■□□□□ 0.51
HMGA1-203ENST00000374116 EZH2Q15910 746 aaKnown RBP18.21■□□□□ 0.51
HMGA1-203ENST00000374116 SIPA1L3O60292 1781 aaPredicted RBP18.21■□□□□ 0.51
HMGA1-203ENST00000374116 LMOD3Q0VAK6 560 aa18.21■□□□□ 0.51
HMGA1-203ENST00000374116 IL16Q14005 1332 aa18.21■□□□□ 0.5
HMGA1-203ENST00000374116 MRC1P22897 1456 aa18.2■□□□□ 0.5
HMGA1-203ENST00000374116 CENPQQ7L2Z9 268 aaPredicted RBP18.2■□□□□ 0.5
HMGA1-203ENST00000374116 KDM2BQ8NHM5 1336 aa18.2■□□□□ 0.5
HMGA1-203ENST00000374116 PDE3AQ14432 1141 aa18.19■□□□□ 0.5
HMGA1-203ENST00000374116 PROM2Q8N271 834 aa18.19■□□□□ 0.5
HMGA1-203ENST00000374116 RBM42Q9BTD8 480 aaKnown RBP18.19■□□□□ 0.5
HMGA1-203ENST00000374116 MYH16Q9H6N6 1097 aa18.19■□□□□ 0.5
HMGA1-203ENST00000374116 PALLDQ8WX93 1383 aa18.19■□□□□ 0.5
HMGA1-203ENST00000374116 TAF7Q15545 349 aaPredicted RBP18.19■□□□□ 0.5
HMGA1-203ENST00000374116 BAG6P46379 1132 aa18.18■□□□□ 0.5
HMGA1-203ENST00000374116 RARSP54136 660 aaKnown RBP18.18■□□□□ 0.5
HMGA1-203ENST00000374116 CAMKK2Q96RR4 588 aa18.17■□□□□ 0.5
HMGA1-203ENST00000374116 CT47B1P0C2W7 299 aaPredicted RBP18.16■□□□□ 0.5
HMGA1-203ENST00000374116 ZNF790Q6PG37 636 aa18.16■□□□□ 0.5
HMGA1-203ENST00000374116 CCDC125Q86Z20 511 aa18.16■□□□□ 0.5
HMGA1-203ENST00000374116 SLC4A9Q96Q91 983 aa18.16■□□□□ 0.5
HMGA1-203ENST00000374116 LRRC4BQ9NT99 713 aa18.16■□□□□ 0.5
HMGA1-203ENST00000374116 TSPYL4Q9UJ04 414 aa18.16■□□□□ 0.5
HMGA1-203ENST00000374116 PLSCR1O15162 318 aa18.15■□□□□ 0.5
HMGA1-203ENST00000374116 TXNRD1Q16881 649 aa18.15■□□□□ 0.5
HMGA1-203ENST00000374116 TTC5Q8N0Z6 440 aa18.15■□□□□ 0.5
HMGA1-203ENST00000374116 ZNF496Q96IT1 587 aaPredicted RBP18.15■□□□□ 0.5
HMGA1-203ENST00000374116 LOC102724428A0A0B4J2F2 783 aa18.14■□□□□ 0.5
HMGA1-203ENST00000374116 PRAMEF22A3QJZ6 481 aa18.14■□□□□ 0.5
HMGA1-203ENST00000374116 SIK1P57059 783 aa18.14■□□□□ 0.5
HMGA1-203ENST00000374116 KRT24Q2M2I5 525 aa18.14■□□□□ 0.5
HMGA1-203ENST00000374116 TSR2Q969E8 191 aaKnown RBP18.14■□□□□ 0.5
HMGA1-203ENST00000374116 PAPPAQ13219 1627 aa18.14■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 37.9 ms