RNA–Protein interactions for RNA: ENST00000368531.6

TPM3-211, Transcript of tropomyosin 3, humanhuman

TSL 1 (best) BASIC

Gene TPM3, Length 1,115 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM3-211ENST00000368531 LMOD3Q0VAK6 560 aa18.26■□□□□ 0.51
TPM3-211ENST00000368531 SLC52A2Q9HAB3 445 aa18.26■□□□□ 0.51
TPM3-211ENST00000368531 TRIM35Q9UPQ4 493 aa18.26■□□□□ 0.51
TPM3-211ENST00000368531 DEFB132Q7Z7B7 95 aa18.24■□□□□ 0.51
TPM3-211ENST00000368531 SIPA1L3O60292 1781 aaPredicted RBP18.24■□□□□ 0.51
TPM3-211ENST00000368531 CEMIPQ8WUJ3 1361 aa18.23■□□□□ 0.51
TPM3-211ENST00000368531 CCDC125Q86Z20 511 aa18.23■□□□□ 0.51
TPM3-211ENST00000368531 ASAP1Q9ULH1 1129 aa18.23■□□□□ 0.51
TPM3-211ENST00000368531 BAG6P46379 1132 aa18.22■□□□□ 0.51
TPM3-211ENST00000368531 EN1Q05925 392 aaPredicted RBP18.22■□□□□ 0.51
TPM3-211ENST00000368531 SLC39A6Q13433 755 aa18.22■□□□□ 0.51
TPM3-211ENST00000368531 MIS18AQ9NYP9 233 aa18.22■□□□□ 0.51
TPM3-211ENST00000368531 LAS1LQ9Y4W2 734 aaKnown RBP18.22■□□□□ 0.51
TPM3-211ENST00000368531 MRC1P22897 1456 aa18.21■□□□□ 0.51
TPM3-211ENST00000368531 ATG3Q9NT62 314 aa18.21■□□□□ 0.51
TPM3-211ENST00000368531 BTBD11A6QL63 1104 aa18.2■□□□□ 0.5
TPM3-211ENST00000368531 TAF7Q15545 349 aaPredicted RBP18.2■□□□□ 0.5
TPM3-211ENST00000368531 EZH2Q15910 746 aaKnown RBP18.19■□□□□ 0.5
TPM3-211ENST00000368531 WWC1Q8IX03 1113 aa18.19■□□□□ 0.5
TPM3-211ENST00000368531 PALLDQ8WX93 1383 aa18.18■□□□□ 0.5
TPM3-211ENST00000368531 KCNQ3O43525 872 aa18.18■□□□□ 0.5
TPM3-211ENST00000368531 PTCD1O75127 700 aaKnown RBP18.18■□□□□ 0.5
TPM3-211ENST00000368531 KCNQ4P56696 695 aa18.18■□□□□ 0.5
TPM3-211ENST00000368531 SMARCC1Q92922 1105 aaPredicted RBP18.18■□□□□ 0.5
TPM3-211ENST00000368531 RBM42Q9BTD8 480 aaKnown RBP18.18■□□□□ 0.5
TPM3-211ENST00000368531 SOCS7O14512 581 aa18.17■□□□□ 0.5
TPM3-211ENST00000368531 HNRNPUQ00839 825 aaKnown RBP eCLIP18.17■□□□□ 0.5
TPM3-211ENST00000368531 LY75O60449 1722 aa18.17■□□□□ 0.5
TPM3-211ENST00000368531 PAPPAQ13219 1627 aa18.16■□□□□ 0.5
TPM3-211ENST00000368531 EP400Q96L91 3159 aa18.16■□□□□ 0.5
TPM3-211ENST00000368531 PLSCR1O15162 318 aa18.16■□□□□ 0.5
TPM3-211ENST00000368531 CCDC27Q2M243 656 aa18.16■□□□□ 0.5
TPM3-211ENST00000368531 TTC5Q8N0Z6 440 aa18.16■□□□□ 0.5
TPM3-211ENST00000368531 TXNRD1Q16881 649 aa18.15■□□□□ 0.5
TPM3-211ENST00000368531 ZNF790Q6PG37 636 aa18.15■□□□□ 0.5
TPM3-211ENST00000368531 CAMKK2Q96RR4 588 aa18.15■□□□□ 0.5
TPM3-211ENST00000368531 TSPYL4Q9UJ04 414 aa18.15■□□□□ 0.5
TPM3-211ENST00000368531 CALD1Q05682 793 aaKnown RBP18.14■□□□□ 0.49
TPM3-211ENST00000368531 PROM2Q8N271 834 aa18.14■□□□□ 0.49
TPM3-211ENST00000368531 CCNL1Q9UK58 526 aaPredicted RBP18.14■□□□□ 0.49
TPM3-211ENST00000368531 KDM3BQ7LBC6 1761 aa18.14■□□□□ 0.49
TPM3-211ENST00000368531 LOC102724428A0A0B4J2F2 783 aa18.13■□□□□ 0.49
TPM3-211ENST00000368531 SIK1P57059 783 aa18.13■□□□□ 0.49
TPM3-211ENST00000368531 NGEFQ8N5V2 710 aa18.13■□□□□ 0.49
TPM3-211ENST00000368531 RGPD3A6NKT7 1758 aaPredicted RBP18.12■□□□□ 0.49
TPM3-211ENST00000368531 RGPD4Q7Z3J3 1758 aa18.12■□□□□ 0.49
TPM3-211ENST00000368531 UBR2Q8IWV8 1755 aa18.12■□□□□ 0.49
TPM3-211ENST00000368531 ATP6V1AP38606 617 aa18.12■□□□□ 0.49
TPM3-211ENST00000368531 NCBP3Q53F19 620 aaKnown RBP18.12■□□□□ 0.49
TPM3-211ENST00000368531 ZNF496Q96IT1 587 aaPredicted RBP18.12■□□□□ 0.49
TPM3-211ENST00000368531 CHL1O00533 1208 aa18.11■□□□□ 0.49
TPM3-211ENST00000368531 WDR63Q8IWG1 891 aa18.11■□□□□ 0.49
TPM3-211ENST00000368531 CFAP44Q96MT7 982 aa18.11■□□□□ 0.49
TPM3-211ENST00000368531 SLC4A9Q96Q91 983 aa18.11■□□□□ 0.49
TPM3-211ENST00000368531 LRRC4BQ9NT99 713 aa18.11■□□□□ 0.49
TPM3-211ENST00000368531 KCPQ6ZWJ8 1503 aa18.11■□□□□ 0.49
TPM3-211ENST00000368531 RREB1Q92766 1687 aa18.1■□□□□ 0.49
TPM3-211ENST00000368531 GNAI1P63096 354 aa18.1■□□□□ 0.49
TPM3-211ENST00000368531 FMNL2Q96PY5 1086 aa18.1■□□□□ 0.49
TPM3-211ENST00000368531 MBIPQ9NS73 344 aa18.1■□□□□ 0.49
TPM3-211ENST00000368531 IFT57Q9NWB7 429 aa18.1■□□□□ 0.49
TPM3-211ENST00000368531 TAF1LQ8IZX4 1826 aa18.09■□□□□ 0.49
TPM3-211ENST00000368531 ITPK1Q13572 414 aa18.09■□□□□ 0.49
TPM3-211ENST00000368531 SLC27A3Q5K4L6 730 aa18.09■□□□□ 0.49
TPM3-211ENST00000368531 TSR2Q969E8 191 aaKnown RBP18.09■□□□□ 0.49
TPM3-211ENST00000368531 YTHDC1Q96MU7 727 aaKnown RBP18.09■□□□□ 0.49
TPM3-211ENST00000368531 NUP188Q5SRE5 1749 aa18.09■□□□□ 0.49
TPM3-211ENST00000368531 ZNF853P0CG23 659 aa18.08■□□□□ 0.48
TPM3-211ENST00000368531 EIF4A1P60842 406 aaKnown RBP18.08■□□□□ 0.48
TPM3-211ENST00000368531 DNAJC10Q8IXB1 793 aa18.08■□□□□ 0.48
TPM3-211ENST00000368531 SPINK5Q9NQ38 1064 aaPredicted RBP18.08■□□□□ 0.48
TPM3-211ENST00000368531 BABAM1Q9NWV8 329 aa18.08■□□□□ 0.48
TPM3-211ENST00000368531 C5P01031 1676 aa18.08■□□□□ 0.48
TPM3-211ENST00000368531 HEG1Q9ULI3 1381 aa18.07■□□□□ 0.48
TPM3-211ENST00000368531 TJP1Q07157 1748 aa18.07■□□□□ 0.48
TPM3-211ENST00000368531 IL16Q14005 1332 aa18.07■□□□□ 0.48
TPM3-211ENST00000368531 ZNF521Q96K83 1311 aa18.07■□□□□ 0.48
TPM3-211ENST00000368531 GOLGA2Q08379 1002 aa18.07■□□□□ 0.48
TPM3-211ENST00000368531 KRT24Q2M2I5 525 aa18.07■□□□□ 0.48
TPM3-211ENST00000368531 PRAMEF22A3QJZ6 481 aa18.06■□□□□ 0.48
TPM3-211ENST00000368531 LINC00116Q8NCU8 138 aa18.06■□□□□ 0.48
TPM3-211ENST00000368531 CDCA7LQ96GN5 454 aa18.06■□□□□ 0.48
TPM3-211ENST00000368531 ZNF831Q5JPB2 1677 aa18.04■□□□□ 0.48
TPM3-211ENST00000368531 ELL2O00472 640 aaPredicted RBP18.04■□□□□ 0.48
TPM3-211ENST00000368531 SNRPA1P09661 255 aaKnown RBP18.04■□□□□ 0.48
TPM3-211ENST00000368531 COL5A3P25940 1745 aaPredicted RBP18.03■□□□□ 0.48
TPM3-211ENST00000368531 FANCIQ9NVI1 1328 aa18.03■□□□□ 0.48
TPM3-211ENST00000368531 GIGYF1O75420 1035 aaPredicted RBP18.03■□□□□ 0.48
TPM3-211ENST00000368531 VSIG10Q8N0Z9 540 aa18.03■□□□□ 0.48
TPM3-211ENST00000368531 MYH16Q9H6N6 1097 aa18.03■□□□□ 0.48
TPM3-211ENST00000368531 USP16Q9Y5T5 823 aa18.03■□□□□ 0.48
TPM3-211ENST00000368531 C4BP0C0L5 1744 aa18.03■□□□□ 0.48
TPM3-211ENST00000368531 NBPF14Q5TI25 921 aa18.02■□□□□ 0.48
TPM3-211ENST00000368531 NECTIN2Q92692 538 aa18.02■□□□□ 0.48
TPM3-211ENST00000368531 ANO8Q9HCE9 1232 aaPredicted RBP18.02■□□□□ 0.48
TPM3-211ENST00000368531 MYH14Q7Z406 1995 aaKnown RBP18.01■□□□□ 0.47
TPM3-211ENST00000368531 CYP19A1P11511 503 aaPredicted RBP18.01■□□□□ 0.47
TPM3-211ENST00000368531 EIF2S2P20042 333 aaKnown RBP18.01■□□□□ 0.47
TPM3-211ENST00000368531 SLFN5Q08AF3 891 aa18.01■□□□□ 0.47
TPM3-211ENST00000368531 ZNF827Q17R98 1081 aa18.01■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms