RNA–Protein interactions for RNA: ENST00000367251.7

SYNE1-205, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 5,837 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-205ENST00000367251 CWC15Q9P013 229 aaKnown RBP10.62□□□□□ -0.71
SYNE1-205ENST00000367251 FOSBP53539 338 aa10.62□□□□□ -0.71
SYNE1-205ENST00000367251 TBC1D2Q9BYX2 928 aa10.62□□□□□ -0.71
SYNE1-205ENST00000367251 ADGRL2O95490 1459 aa10.62□□□□□ -0.71
SYNE1-205ENST00000367251 SMTNL1A8MU46 457 aa10.62□□□□□ -0.71
SYNE1-205ENST00000367251 TTLL12Q14166 644 aaPredicted RBP10.62□□□□□ -0.71
SYNE1-205ENST00000367251 CEP57L1Q8IYX8 460 aa10.62□□□□□ -0.71
SYNE1-205ENST00000367251 CCDC66A2RUB6 948 aa10.62□□□□□ -0.71
SYNE1-205ENST00000367251 NEBLO76041 1014 aa10.62□□□□□ -0.71
SYNE1-205ENST00000367251 HMGB1P09429 215 aaKnown RBP10.62□□□□□ -0.71
SYNE1-205ENST00000367251 KIF2AO00139 706 aaPredicted RBP10.61□□□□□ -0.71
SYNE1-205ENST00000367251 PDILTQ8N807 584 aa10.61□□□□□ -0.71
SYNE1-205ENST00000367251 CNNM1Q9NRU3 951 aa10.61□□□□□ -0.71
SYNE1-205ENST00000367251 MCM5P33992 734 aa10.61□□□□□ -0.71
SYNE1-205ENST00000367251 CCDC183Q5T5S1 534 aa10.61□□□□□ -0.71
SYNE1-205ENST00000367251 LARP1Q6PKG0 1096 aaKnown RBP10.61□□□□□ -0.71
SYNE1-205ENST00000367251 SCAND2PQ9GZW5 306 aaPredicted RBP10.61□□□□□ -0.71
SYNE1-205ENST00000367251 MAGEC2Q9UBF1 373 aaPredicted RBP10.61□□□□□ -0.71
SYNE1-205ENST00000367251 NPC1L1Q9UHC9 1359 aa10.61□□□□□ -0.71
SYNE1-205ENST00000367251 RRP9O43818 475 aaKnown RBP10.61□□□□□ -0.71
SYNE1-205ENST00000367251 PDCL3Q9H2J4 239 aa10.61□□□□□ -0.71
SYNE1-205ENST00000367251 CCDC57Q2TAC2 916 aa10.6□□□□□ -0.71
SYNE1-205ENST00000367251 SYCP2Q9BX26 1530 aa10.6□□□□□ -0.71
SYNE1-205ENST00000367251 MAP3K11Q16584 847 aa10.6□□□□□ -0.71
SYNE1-205ENST00000367251 NOL7Q9UMY1 257 aaKnown RBP10.6□□□□□ -0.71
SYNE1-205ENST00000367251 CWC27Q6UX04 472 aaKnown RBP10.6□□□□□ -0.71
SYNE1-205ENST00000367251 MYO6Q9UM54 1294 aa10.6□□□□□ -0.71
SYNE1-205ENST00000367251 ME1P48163 572 aa10.6□□□□□ -0.71
SYNE1-205ENST00000367251 PDCL2Q8N4E4 241 aa10.6□□□□□ -0.71
SYNE1-205ENST00000367251 CCDC112Q8NEF3 446 aa10.6□□□□□ -0.71
SYNE1-205ENST00000367251 CCDC69A6NI79 296 aa10.6□□□□□ -0.71
SYNE1-205ENST00000367251 NUCB1Q02818 461 aa10.6□□□□□ -0.71
SYNE1-205ENST00000367251 AKAP2Q9Y2D5 859 aa10.6□□□□□ -0.71
SYNE1-205ENST00000367251 ZSCAN29Q8IWY8 852 aaPredicted RBP10.59□□□□□ -0.71
SYNE1-205ENST00000367251 CEP126Q9P2H0 1117 aa10.59□□□□□ -0.71
SYNE1-205ENST00000367251 GRM1Q13255 1194 aa10.59□□□□□ -0.71
SYNE1-205ENST00000367251 CTAGE5O15320 804 aa10.59□□□□□ -0.71
SYNE1-205ENST00000367251 CASTP20810 708 aaKnown RBP10.59□□□□□ -0.71
SYNE1-205ENST00000367251 STIM1Q13586 685 aa10.59□□□□□ -0.71
SYNE1-205ENST00000367251 ZFYVE9O95405 1425 aa10.59□□□□□ -0.71
SYNE1-205ENST00000367251 KRT18P05783 430 aaKnown RBP10.59□□□□□ -0.71
SYNE1-205ENST00000367251 SYCP1Q15431 976 aa10.59□□□□□ -0.71
SYNE1-205ENST00000367251 HYPKQ9NX55 129 aa10.59□□□□□ -0.71
SYNE1-205ENST00000367251 SERPINC1P01008 464 aa10.58□□□□□ -0.72
SYNE1-205ENST00000367251 U3KPZ7 1027 aaPredicted RBP10.58□□□□□ -0.72
SYNE1-205ENST00000367251 COL17A1Q9UMD9 1497 aaPredicted RBP10.58□□□□□ -0.72
SYNE1-205ENST00000367251 IMMTQ16891 758 aaKnown RBP10.58□□□□□ -0.72
SYNE1-205ENST00000367251 SNX21Q969T3 373 aa10.58□□□□□ -0.72
SYNE1-205ENST00000367251 CEP131Q9UPN4 1083 aa10.58□□□□□ -0.72
SYNE1-205ENST00000367251 HMGB2P26583 209 aaKnown RBP10.58□□□□□ -0.72
SYNE1-205ENST00000367251 UVSSAQ2YD98 709 aa10.58□□□□□ -0.72
SYNE1-205ENST00000367251 TTC22Q5TAA0 569 aa10.58□□□□□ -0.72
SYNE1-205ENST00000367251 WDR78Q5VTH9 848 aa10.58□□□□□ -0.72
SYNE1-205ENST00000367251 TNPO1Q92973 898 aaKnown RBP10.58□□□□□ -0.72
SYNE1-205ENST00000367251 LIMCH1Q9UPQ0 1083 aa10.58□□□□□ -0.72
SYNE1-205ENST00000367251 ZNF518AQ6AHZ1 1483 aa10.58□□□□□ -0.72
SYNE1-205ENST00000367251 PPFIBP1Q86W92 1011 aa10.58□□□□□ -0.72
SYNE1-205ENST00000367251 LUC7LQ9NQ29 371 aaKnown RBP10.58□□□□□ -0.72
SYNE1-205ENST00000367251 ZNHIT6Q9NWK9 470 aaKnown RBP10.58□□□□□ -0.72
SYNE1-205ENST00000367251 PIK3R4Q99570 1358 aa10.57□□□□□ -0.72
SYNE1-205ENST00000367251 IDI1Q13907 227 aa10.57□□□□□ -0.72
SYNE1-205ENST00000367251 MCM10Q7L590 875 aa10.57□□□□□ -0.72
SYNE1-205ENST00000367251 NME9Q86XW9 330 aa10.57□□□□□ -0.72
SYNE1-205ENST00000367251 IL1RAPL2Q9NP60 686 aa10.57□□□□□ -0.72
SYNE1-205ENST00000367251 EXOC6BQ9Y2D4 811 aa10.57□□□□□ -0.72
SYNE1-205ENST00000367251 A2MP01023 1474 aa10.57□□□□□ -0.72
SYNE1-205ENST00000367251 DNAAF4Q8WXU2 420 aa10.57□□□□□ -0.72
SYNE1-205ENST00000367251 CDK5RAP3Q96JB5 506 aa10.57□□□□□ -0.72
SYNE1-205ENST00000367251 SIL1Q9H173 461 aa10.57□□□□□ -0.72
SYNE1-205ENST00000367251 TTC21AQ8NDW8 1320 aa10.57□□□□□ -0.72
SYNE1-205ENST00000367251 IGHDP01880 384 aa10.57□□□□□ -0.72
SYNE1-205ENST00000367251 PLCD3Q8N3E9 789 aa10.57□□□□□ -0.72
SYNE1-205ENST00000367251 CAGE1Q8TC20 777 aa10.57□□□□□ -0.72
SYNE1-205ENST00000367251 EVI5LQ96CN4 794 aa10.57□□□□□ -0.72
SYNE1-205ENST00000367251 CAVIN2O95810 425 aa10.57□□□□□ -0.72
SYNE1-205ENST00000367251 MAP4K4O95819 1239 aaPredicted RBP10.57□□□□□ -0.72
SYNE1-205ENST00000367251 STK3Q13188 491 aa10.57□□□□□ -0.72
SYNE1-205ENST00000367251 TBC1D9Q6ZT07 1266 aa10.57□□□□□ -0.72
SYNE1-205ENST00000367251 WAPLQ7Z5K2 1190 aa10.57□□□□□ -0.72
SYNE1-205ENST00000367251 PZPP20742 1482 aa10.57□□□□□ -0.72
SYNE1-205ENST00000367251 NEMFO60524 1076 aa10.56□□□□□ -0.72
SYNE1-205ENST00000367251 MAP3K9P80192 1104 aa10.56□□□□□ -0.72
SYNE1-205ENST00000367251 NUTM1Q86Y26 1132 aa10.56□□□□□ -0.72
SYNE1-205ENST00000367251 SCLT1Q96NL6 688 aa10.56□□□□□ -0.72
SYNE1-205ENST00000367251 DBF4Q9UBU7 674 aaPredicted RBP10.56□□□□□ -0.72
SYNE1-205ENST00000367251 GCC2Q8IWJ2 1684 aa10.56□□□□□ -0.72
SYNE1-205ENST00000367251 UQCRHLA0A096LP55 91 aa10.56□□□□□ -0.72
SYNE1-205ENST00000367251 UQCRHP07919 91 aa10.56□□□□□ -0.72
SYNE1-205ENST00000367251 SPC24Q8NBT2 197 aa10.56□□□□□ -0.72
SYNE1-205ENST00000367251 ERLIN1O75477 346 aa10.56□□□□□ -0.72
SYNE1-205ENST00000367251 KLHL40Q2TBA0 621 aa10.56□□□□□ -0.72
SYNE1-205ENST00000367251 UPF3BQ9BZI7 483 aaKnown RBP10.56□□□□□ -0.72
SYNE1-205ENST00000367251 EMILIN1Q9Y6C2 1016 aa10.56□□□□□ -0.72
SYNE1-205ENST00000367251 ANAPC15P60006 121 aa10.56□□□□□ -0.72
SYNE1-205ENST00000367251 MBIPQ9NS73 344 aa10.56□□□□□ -0.72
SYNE1-205ENST00000367251 SAMD9Q5K651 1589 aa10.56□□□□□ -0.72
SYNE1-205ENST00000367251 SYCE3A1L190 88 aa10.55□□□□□ -0.72
SYNE1-205ENST00000367251 ANO10Q9NW15 660 aa10.55□□□□□ -0.72
SYNE1-205ENST00000367251 TMOD2Q9NZR1 351 aa10.55□□□□□ -0.72
SYNE1-205ENST00000367251 SOS1Q07889 1333 aaPredicted RBP10.55□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms