RNA–Protein interactions for RNA: ENST00000359902.2

CCDC88B-203, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 2,326 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-203ENST00000359902 HDGFL1Q5TGJ6 251 aa25.76■■□□□ 1.71
CCDC88B-203ENST00000359902 RBM42Q9BTD8 480 aaKnown RBP25.76■■□□□ 1.71
CCDC88B-203ENST00000359902 PHRF1Q9P1Y6 1649 aaKnown RBP25.76■■□□□ 1.71
CCDC88B-203ENST00000359902 LRRC59Q96AG4 307 aaKnown RBP25.75■■□□□ 1.71
CCDC88B-203ENST00000359902 GCP02774 474 aa25.75■■□□□ 1.71
CCDC88B-203ENST00000359902 HSP90AB1P08238 724 aaKnown RBP25.75■■□□□ 1.71
CCDC88B-203ENST00000359902 ATP8B2P98198 1209 aa25.75■■□□□ 1.71
CCDC88B-203ENST00000359902 OSBPL3Q9H4L5 887 aa25.75■■□□□ 1.71
CCDC88B-203ENST00000359902 XPCQ01831 940 aaPredicted RBP25.74■■□□□ 1.71
CCDC88B-203ENST00000359902 MED1Q15648 1581 aaPredicted RBP25.74■■□□□ 1.71
CCDC88B-203ENST00000359902 EIF4A1P60842 406 aaKnown RBP25.74■■□□□ 1.71
CCDC88B-203ENST00000359902 ARHGEF25Q86VW2 580 aa25.74■■□□□ 1.71
CCDC88B-203ENST00000359902 USP26Q9BXU7 913 aa25.74■■□□□ 1.71
CCDC88B-203ENST00000359902 EXOC6BQ9Y2D4 811 aa25.74■■□□□ 1.71
CCDC88B-203ENST00000359902 RGPD2P0DJD1 1756 aa25.73■■□□□ 1.71
CCDC88B-203ENST00000359902 PHAXQ9H814 394 aaKnown RBP25.73■■□□□ 1.71
CCDC88B-203ENST00000359902 PXDNLA1KZ92 1463 aa25.73■■□□□ 1.71
CCDC88B-203ENST00000359902 PNMA6EA0A0J9YXQ4 647 aa25.72■■□□□ 1.71
CCDC88B-203ENST00000359902 PDE1AP54750 535 aa25.72■■□□□ 1.71
CCDC88B-203ENST00000359902 USP44Q9H0E7 712 aa25.72■■□□□ 1.71
CCDC88B-203ENST00000359902 K7ELQ4 463 aaPredicted RBP25.71■■□□□ 1.71
CCDC88B-203ENST00000359902 AKAP4Q5JQC9 854 aa25.71■■□□□ 1.71
CCDC88B-203ENST00000359902 N4BP2Q86UW6 1770 aaPredicted RBP25.71■■□□□ 1.71
CCDC88B-203ENST00000359902 PLEKHO1Q53GL0 409 aaPredicted RBP25.7■■□□□ 1.71
CCDC88B-203ENST00000359902 CASC1Q6TDU7 716 aa25.7■■□□□ 1.71
CCDC88B-203ENST00000359902 LRRFIP2Q9Y608 721 aaKnown RBP25.7■■□□□ 1.71
CCDC88B-203ENST00000359902 SLIT3O75094 1523 aa25.7■■□□□ 1.7
CCDC88B-203ENST00000359902 ZNF530Q6P9A1 599 aaPredicted RBP25.7■■□□□ 1.7
CCDC88B-203ENST00000359902 CIZ1Q9ULV3 898 aaPredicted RBP25.69■■□□□ 1.7
CCDC88B-203ENST00000359902 SALL3Q9BXA9 1300 aa25.69■■□□□ 1.7
CCDC88B-203ENST00000359902 HOXB7P09629 217 aa25.69■■□□□ 1.7
CCDC88B-203ENST00000359902 EIF2S2P20042 333 aaKnown RBP25.69■■□□□ 1.7
CCDC88B-203ENST00000359902 LRRCC1Q9C099 1032 aa25.69■■□□□ 1.7
CCDC88B-203ENST00000359902 KCNQ3O43525 872 aa25.68■■□□□ 1.7
CCDC88B-203ENST00000359902 LMO7Q8WWI1 1683 aa25.68■■□□□ 1.7
CCDC88B-203ENST00000359902 AMOTQ4VCS5 1084 aa25.68■■□□□ 1.7
CCDC88B-203ENST00000359902 KDM3BQ7LBC6 1761 aa25.68■■□□□ 1.7
CCDC88B-203ENST00000359902 NCAPD2Q15021 1401 aa25.67■■□□□ 1.7
CCDC88B-203ENST00000359902 PLEKHG5O94827 1062 aa25.67■■□□□ 1.7
CCDC88B-203ENST00000359902 RABEP1Q15276 862 aa25.67■■□□□ 1.7
CCDC88B-203ENST00000359902 IBTKQ9P2D0 1353 aaPredicted RBP25.67■■□□□ 1.7
CCDC88B-203ENST00000359902 TEFQ10587 303 aa25.66■■□□□ 1.7
CCDC88B-203ENST00000359902 LMOD2Q6P5Q4 547 aa25.66■■□□□ 1.7
CCDC88B-203ENST00000359902 MPRIPQ6WCQ1 1025 aa25.66■■□□□ 1.7
CCDC88B-203ENST00000359902 UBTFL1P0CB47 393 aaPredicted RBP25.66■■□□□ 1.7
CCDC88B-203ENST00000359902 BTBD11A6QL63 1104 aa25.65■■□□□ 1.7
CCDC88B-203ENST00000359902 PROSER2Q86WR7 435 aaPredicted RBP25.65■■□□□ 1.7
CCDC88B-203ENST00000359902 ANKRD24Q8TF21 1146 aa25.65■■□□□ 1.7
CCDC88B-203ENST00000359902 KRT28Q7Z3Y7 464 aa25.65■■□□□ 1.7
CCDC88B-203ENST00000359902 CHPF2Q9P2E5 772 aa25.65■■□□□ 1.7
CCDC88B-203ENST00000359902 IL27Q8NEV9 243 aa25.64■■□□□ 1.7
CCDC88B-203ENST00000359902 CHMP4AQ9BY43 222 aa25.64■■□□□ 1.7
CCDC88B-203ENST00000359902 RNMTO43148 476 aaKnown RBP25.64■■□□□ 1.69
CCDC88B-203ENST00000359902 HSP90AA1P07900 732 aaKnown RBP25.64■■□□□ 1.69
CCDC88B-203ENST00000359902 SRCIN1Q9C0H9 1055 aa25.64■■□□□ 1.69
CCDC88B-203ENST00000359902 BRPF3Q9ULD4 1205 aa25.64■■□□□ 1.69
CCDC88B-203ENST00000359902 AXIN2Q9Y2T1 843 aa25.63■■□□□ 1.69
CCDC88B-203ENST00000359902 REC8O95072 547 aa25.63■■□□□ 1.69
CCDC88B-203ENST00000359902 TRPM3Q9HCF6 1732 aaPredicted RBP25.62■■□□□ 1.69
CCDC88B-203ENST00000359902 ERC2O15083 957 aa25.62■■□□□ 1.69
CCDC88B-203ENST00000359902 MX1P20591 662 aa25.62■■□□□ 1.69
CCDC88B-203ENST00000359902 RAB3GAP1Q15042 981 aa25.62■■□□□ 1.69
CCDC88B-203ENST00000359902 TSHZ3Q63HK5 1081 aa25.62■■□□□ 1.69
CCDC88B-203ENST00000359902 SSH3Q8TE77 659 aa25.62■■□□□ 1.69
CCDC88B-203ENST00000359902 TNPO1Q92973 898 aaKnown RBP25.62■■□□□ 1.69
CCDC88B-203ENST00000359902 FOXD4L1Q9NU39 408 aa25.62■■□□□ 1.69
CCDC88B-203ENST00000359902 PXDNQ92626 1479 aa25.62■■□□□ 1.69
CCDC88B-203ENST00000359902 C1orf141Q5JVX7 400 aa25.62■■□□□ 1.69
CCDC88B-203ENST00000359902 C1orf167Q5SNV9 1468 aa25.6■■□□□ 1.69
CCDC88B-203ENST00000359902 TRAK2O60296 914 aa25.6■■□□□ 1.69
CCDC88B-203ENST00000359902 BEND3Q5T5X7 828 aa25.6■■□□□ 1.69
CCDC88B-203ENST00000359902 STAP2Q9UGK3 403 aa25.6■■□□□ 1.69
CCDC88B-203ENST00000359902 PI4KAP2A4QPH2 592 aa25.59■■□□□ 1.69
CCDC88B-203ENST00000359902 PI4KAP1Q8N8J0 262 aa25.59■■□□□ 1.69
CCDC88B-203ENST00000359902 DNAAF4Q8WXU2 420 aa25.59■■□□□ 1.69
CCDC88B-203ENST00000359902 C19orf44Q9H6X5 657 aa25.59■■□□□ 1.69
CCDC88B-203ENST00000359902 DDX11L8A8MPP1 907 aa25.59■■□□□ 1.69
CCDC88B-203ENST00000359902 OVOS2A0A0G2JMS6 1433 aa25.58■■□□□ 1.69
CCDC88B-203ENST00000359902 POLA2Q14181 598 aa25.58■■□□□ 1.68
CCDC88B-203ENST00000359902 PPP1R42Q7Z4L9 355 aa25.58■■□□□ 1.68
CCDC88B-203ENST00000359902 ANXA1P04083 346 aa25.57■■□□□ 1.68
CCDC88B-203ENST00000359902 TUBGCP6Q96RT7 1819 aa25.57■■□□□ 1.68
CCDC88B-203ENST00000359902 NBPF7P0C2Y1 421 aaPredicted RBP25.57■■□□□ 1.68
CCDC88B-203ENST00000359902 CAMTA1Q9Y6Y1 1673 aa25.56■■□□□ 1.68
CCDC88B-203ENST00000359902 DBF4Q9UBU7 674 aaPredicted RBP25.55■■□□□ 1.68
CCDC88B-203ENST00000359902 MST1RQ04912 1400 aa25.55■■□□□ 1.68
CCDC88B-203ENST00000359902 ADCY9O60503 1353 aa25.55■■□□□ 1.68
CCDC88B-203ENST00000359902 KIF1AQ12756 1690 aa25.55■■□□□ 1.68
CCDC88B-203ENST00000359902 GIGYF1O75420 1035 aaPredicted RBP25.55■■□□□ 1.68
CCDC88B-203ENST00000359902 HEG1Q9ULI3 1381 aa25.55■■□□□ 1.68
CCDC88B-203ENST00000359902 RAB11FIP3O75154 756 aa25.54■■□□□ 1.68
CCDC88B-203ENST00000359902 GBP4Q96PP9 640 aa25.54■■□□□ 1.68
CCDC88B-203ENST00000359902 ESYT1Q9BSJ8 1104 aa25.54■■□□□ 1.68
CCDC88B-203ENST00000359902 SURF6O75683 361 aaKnown RBP25.53■■□□□ 1.68
CCDC88B-203ENST00000359902 IL1RAPL2Q9NP60 686 aa25.53■■□□□ 1.68
CCDC88B-203ENST00000359902 GZF1Q9H116 711 aaPredicted RBP25.53■■□□□ 1.68
CCDC88B-203ENST00000359902 AOX1Q06278 1338 aa25.52■■□□□ 1.68
CCDC88B-203ENST00000359902 ZC3H6P61129 1189 aaKnown RBP25.52■■□□□ 1.68
CCDC88B-203ENST00000359902 ERBB3P21860 1342 aa25.52■■□□□ 1.68
CCDC88B-203ENST00000359902 SRGAP3O43295 1099 aa25.52■■□□□ 1.68
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms