RNA–Protein interactions for RNA: ENST00000358808.6

CLIP1-202, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene CLIP1, Length 5,880 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-202ENST00000358808 GNAI2P04899 355 aa11.92□□□□□ -0.5
CLIP1-202ENST00000358808 IL27Q8NEV9 243 aa11.92□□□□□ -0.5
CLIP1-202ENST00000358808 CCDC102AQ96A19 550 aa11.92□□□□□ -0.5
CLIP1-202ENST00000358808 AEBP1Q8IUX7 1158 aa11.91□□□□□ -0.5
CLIP1-202ENST00000358808 CFAP45Q9UL16 551 aa11.91□□□□□ -0.5
CLIP1-202ENST00000358808 THOC2Q8NI27 1593 aaKnown RBP11.91□□□□□ -0.5
CLIP1-202ENST00000358808 UBE4AQ14139 1066 aa11.91□□□□□ -0.5
CLIP1-202ENST00000358808 POLR3DP05423 398 aaPredicted RBP11.91□□□□□ -0.5
CLIP1-202ENST00000358808 CCDC192P0DO97 292 aa11.91□□□□□ -0.5
CLIP1-202ENST00000358808 MTERF4Q7Z6M4 381 aaKnown RBP11.91□□□□□ -0.5
CLIP1-202ENST00000358808 HOOK3Q86VS8 718 aa11.91□□□□□ -0.5
CLIP1-202ENST00000358808 GIMAP7Q8NHV1 300 aa11.91□□□□□ -0.5
CLIP1-202ENST00000358808 PPP6R1Q9UPN7 881 aa11.91□□□□□ -0.5
CLIP1-202ENST00000358808 MACROD2A1Z1Q3 448 aa11.91□□□□□ -0.5
CLIP1-202ENST00000358808 GOPCQ9HD26 462 aa11.91□□□□□ -0.5
CLIP1-202ENST00000358808 MCM2P49736 904 aa11.91□□□□□ -0.5
CLIP1-202ENST00000358808 LARP1Q6PKG0 1096 aaKnown RBP11.91□□□□□ -0.5
CLIP1-202ENST00000358808 MTHFSP49914 203 aa11.9□□□□□ -0.5
CLIP1-202ENST00000358808 CTNNA2P26232 953 aa11.9□□□□□ -0.5
CLIP1-202ENST00000358808 MRE11P49959 708 aa11.9□□□□□ -0.5
CLIP1-202ENST00000358808 ZNF692Q9BU19 519 aaPredicted RBP11.9□□□□□ -0.5
CLIP1-202ENST00000358808 C1orf115Q9H7X2 142 aa11.9□□□□□ -0.5
CLIP1-202ENST00000358808 CCDC148Q8NFR7 591 aa11.9□□□□□ -0.5
CLIP1-202ENST00000358808 CUL5Q93034 780 aa11.9□□□□□ -0.5
CLIP1-202ENST00000358808 TSG101Q99816 390 aa11.9□□□□□ -0.5
CLIP1-202ENST00000358808 FEZ1Q99689 392 aa11.89□□□□□ -0.51
CLIP1-202ENST00000358808 HFM1A2PYH4 1435 aa11.89□□□□□ -0.51
CLIP1-202ENST00000358808 WASF1Q92558 559 aa11.89□□□□□ -0.51
CLIP1-202ENST00000358808 FERP16591 822 aa11.89□□□□□ -0.51
CLIP1-202ENST00000358808 CCDC178Q5BJE1 867 aa11.89□□□□□ -0.51
CLIP1-202ENST00000358808 DMRT2Q9Y5R5 561 aa11.89□□□□□ -0.51
CLIP1-202ENST00000358808 ANKRD18BA2A2Z9 1011 aa11.89□□□□□ -0.51
CLIP1-202ENST00000358808 XPCQ01831 940 aaPredicted RBP11.89□□□□□ -0.51
CLIP1-202ENST00000358808 HDGFL1Q5TGJ6 251 aa11.89□□□□□ -0.51
CLIP1-202ENST00000358808 HMGB2P26583 209 aaKnown RBP11.89□□□□□ -0.51
CLIP1-202ENST00000358808 SMC1AQ14683 1233 aaKnown RBP11.89□□□□□ -0.51
CLIP1-202ENST00000358808 ZNF287Q9HBT7 754 aa11.89□□□□□ -0.51
CLIP1-202ENST00000358808 ABCC2Q92887 1545 aa11.88□□□□□ -0.51
CLIP1-202ENST00000358808 PRKCSHP14314 528 aaPredicted RBP11.88□□□□□ -0.51
CLIP1-202ENST00000358808 PRKAR2BP31323 418 aa11.88□□□□□ -0.51
CLIP1-202ENST00000358808 CCDC96Q2M329 555 aa11.88□□□□□ -0.51
CLIP1-202ENST00000358808 ZNF530Q6P9A1 599 aaPredicted RBP11.88□□□□□ -0.51
CLIP1-202ENST00000358808 PTPN23Q9H3S7 1636 aa11.88□□□□□ -0.51
CLIP1-202ENST00000358808 RTEL1-TNFRSF6BF6WH68 1400 aa11.88□□□□□ -0.51
CLIP1-202ENST00000358808 CEP170Q5SW79 1584 aa11.88□□□□□ -0.51
CLIP1-202ENST00000358808 CCDC85AQ96PX6 553 aaPredicted RBP11.88□□□□□ -0.51
CLIP1-202ENST00000358808 ZNF219Q9P2Y4 722 aaPredicted RBP11.88□□□□□ -0.51
CLIP1-202ENST00000358808 CEP131Q9UPN4 1083 aa11.88□□□□□ -0.51
CLIP1-202ENST00000358808 IDH1O75874 414 aaKnown RBP11.88□□□□□ -0.51
CLIP1-202ENST00000358808 SPA17Q15506 151 aa11.88□□□□□ -0.51
CLIP1-202ENST00000358808 ABCF2Q9UG63 623 aa11.88□□□□□ -0.51
CLIP1-202ENST00000358808 CNTLNQ9NXG0 1405 aa11.88□□□□□ -0.51
CLIP1-202ENST00000358808 AIDAQ96BJ3 306 aa11.88□□□□□ -0.51
CLIP1-202ENST00000358808 ITSN2Q9NZM3 1697 aa11.87□□□□□ -0.51
CLIP1-202ENST00000358808 USP8P40818 1118 aa11.87□□□□□ -0.51
CLIP1-202ENST00000358808 AACSQ86V21 672 aa11.87□□□□□ -0.51
CLIP1-202ENST00000358808 PNISRQ8TF01 805 aaKnown RBP11.87□□□□□ -0.51
CLIP1-202ENST00000358808 CTNNA3Q9UI47 895 aa11.87□□□□□ -0.51
CLIP1-202ENST00000358808 ZNF354CQ86Y25 554 aa11.87□□□□□ -0.51
CLIP1-202ENST00000358808 EHMT1Q9H9B1 1298 aa11.87□□□□□ -0.51
CLIP1-202ENST00000358808 CABP1Q9NZU7 370 aa11.87□□□□□ -0.51
CLIP1-202ENST00000358808 TNNT1P13805 278 aa11.87□□□□□ -0.51
CLIP1-202ENST00000358808 GRM1Q13255 1194 aa11.87□□□□□ -0.51
CLIP1-202ENST00000358808 LARP1BQ659C4 914 aaKnown RBP11.87□□□□□ -0.51
CLIP1-202ENST00000358808 TSNARE1Q96NA8 513 aa11.87□□□□□ -0.51
CLIP1-202ENST00000358808 MKNK2Q9HBH9 465 aa11.87□□□□□ -0.51
CLIP1-202ENST00000358808 ZPR1O75312 459 aa11.87□□□□□ -0.51
CLIP1-202ENST00000358808 KRT85P78386 507 aa11.87□□□□□ -0.51
CLIP1-202ENST00000358808 ARHGAP29Q52LW3 1261 aa11.87□□□□□ -0.51
CLIP1-202ENST00000358808 ATP10BO94823 1461 aa11.87□□□□□ -0.51
CLIP1-202ENST00000358808 GIGYF2Q6Y7W6 1299 aaKnown RBP11.86□□□□□ -0.51
CLIP1-202ENST00000358808 ANKIB1Q9P2G1 1089 aa11.86□□□□□ -0.51
CLIP1-202ENST00000358808 MAP3K9P80192 1104 aa11.86□□□□□ -0.51
CLIP1-202ENST00000358808 IFFO1Q0D2I5 559 aa11.86□□□□□ -0.51
CLIP1-202ENST00000358808 CACNA2D4Q7Z3S7 1137 aa11.86□□□□□ -0.51
CLIP1-202ENST00000358808 RPGRIP1LQ68CZ1 1315 aa11.86□□□□□ -0.51
CLIP1-202ENST00000358808 SLC4A2P04920 1241 aa11.86□□□□□ -0.51
CLIP1-202ENST00000358808 TWISTNBQ3B726 338 aaPredicted RBP11.86□□□□□ -0.51
CLIP1-202ENST00000358808 FKBP15Q5T1M5 1219 aa11.86□□□□□ -0.51
CLIP1-202ENST00000358808 VPS36Q86VN1 386 aa11.86□□□□□ -0.51
CLIP1-202ENST00000358808 SPATA24Q86W54 205 aa11.86□□□□□ -0.51
CLIP1-202ENST00000358808 SPATA32Q96LK8 384 aa11.86□□□□□ -0.51
CLIP1-202ENST00000358808 MAP3K1Q13233 1512 aa11.86□□□□□ -0.51
CLIP1-202ENST00000358808 PLCH2O75038 1416 aa11.86□□□□□ -0.51
CLIP1-202ENST00000358808 TARBP1Q13395 1621 aaKnown RBP11.86□□□□□ -0.51
CLIP1-202ENST00000358808 TRAK2O60296 914 aa11.86□□□□□ -0.51
CLIP1-202ENST00000358808 RBM10P98175 930 aaKnown RBP11.86□□□□□ -0.51
CLIP1-202ENST00000358808 CEP126Q9P2H0 1117 aa11.86□□□□□ -0.51
CLIP1-202ENST00000358808 SULT6B1Q6IMI4 303 aa11.86□□□□□ -0.51
CLIP1-202ENST00000358808 MPNDQ8N594 471 aa11.86□□□□□ -0.51
CLIP1-202ENST00000358808 VTI1AQ96AJ9 217 aa11.86□□□□□ -0.51
CLIP1-202ENST00000358808 GCOM1H8Y6P7 765 aaPredicted RBP11.85□□□□□ -0.51
CLIP1-202ENST00000358808 MYZAPP0CAP1 466 aa11.85□□□□□ -0.51
CLIP1-202ENST00000358808 UPF3BQ9BZI7 483 aaKnown RBP11.85□□□□□ -0.51
CLIP1-202ENST00000358808 SMTNL1A8MU46 457 aa11.85□□□□□ -0.51
CLIP1-202ENST00000358808 LMAN1P49257 510 aa11.85□□□□□ -0.51
CLIP1-202ENST00000358808 DNA2P51530 1060 aa11.85□□□□□ -0.51
CLIP1-202ENST00000358808 SRCIN1Q9C0H9 1055 aa11.85□□□□□ -0.51
CLIP1-202ENST00000358808 BCCIPQ9P287 314 aaKnown RBP eCLIP11.85□□□□□ -0.51
CLIP1-202ENST00000358808 ARL1P40616 181 aaPredicted RBP11.85□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 12.1 ms