RNA–Protein interactions for RNA: ENST00000356000.7

RTN3-205, Transcript of reticulon 3, humanhuman

TSL 2 BASIC

Gene RTN3, Length 2,645 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-205ENST00000356000 TNNT1P13805 278 aa18.89■□□□□ 0.61
RTN3-205ENST00000356000 TMX1Q9H3N1 280 aa18.89■□□□□ 0.61
RTN3-205ENST00000356000 POLKQ9UBT6 870 aa18.89■□□□□ 0.61
RTN3-205ENST00000356000 ZNF335Q9H4Z2 1342 aaPredicted RBP18.89■□□□□ 0.61
RTN3-205ENST00000356000 NUP155O75694 1391 aa18.88■□□□□ 0.61
RTN3-205ENST00000356000 FBXO38Q6PIJ6 1188 aa18.88■□□□□ 0.61
RTN3-205ENST00000356000 ZBTB40Q9NUA8 1239 aa18.88■□□□□ 0.61
RTN3-205ENST00000356000 BRD1O95696 1058 aa18.88■□□□□ 0.61
RTN3-205ENST00000356000 ANKRD50Q9ULJ7 1429 aa18.88■□□□□ 0.61
RTN3-205ENST00000356000 UBAP1LF5GYI3 381 aa18.87■□□□□ 0.61
RTN3-205ENST00000356000 MYO1CO00159 1063 aa18.87■□□□□ 0.61
RTN3-205ENST00000356000 SYT10Q6XYQ8 523 aa18.87■□□□□ 0.61
RTN3-205ENST00000356000 ITPRIPQ8IWB1 547 aa18.87■□□□□ 0.61
RTN3-205ENST00000356000 C16orf45Q96MC5 204 aaPredicted RBP18.87■□□□□ 0.61
RTN3-205ENST00000356000 ARHGAP23Q9P227 1491 aa18.87■□□□□ 0.61
RTN3-205ENST00000356000 AP5Z1O43299 807 aa18.87■□□□□ 0.61
RTN3-205ENST00000356000 ST18O60284 1047 aa18.87■□□□□ 0.61
RTN3-205ENST00000356000 CARD10Q9BWT7 1032 aa18.87■□□□□ 0.61
RTN3-205ENST00000356000 TRIM27P14373 513 aa18.87■□□□□ 0.61
RTN3-205ENST00000356000 BMS1Q14692 1282 aaKnown RBP18.87■□□□□ 0.61
RTN3-205ENST00000356000 TXLNBQ8N3L3 684 aa18.87■□□□□ 0.61
RTN3-205ENST00000356000 CT47A1Q5JQC4 288 aaPredicted RBP18.86■□□□□ 0.61
RTN3-205ENST00000356000 CCDC183Q5T5S1 534 aa18.86■□□□□ 0.61
RTN3-205ENST00000356000 BANK1Q8NDB2 785 aa18.86■□□□□ 0.61
RTN3-205ENST00000356000 UBR1Q8IWV7 1749 aa18.86■□□□□ 0.61
RTN3-205ENST00000356000 ATG3Q9NT62 314 aa18.86■□□□□ 0.61
RTN3-205ENST00000356000 GYS2P54840 703 aa18.85■□□□□ 0.61
RTN3-205ENST00000356000 FOXD4L5Q5VV16 416 aaPredicted RBP18.85■□□□□ 0.61
RTN3-205ENST00000356000 FOXD4L4Q8WXT5 416 aaPredicted RBP18.85■□□□□ 0.61
RTN3-205ENST00000356000 CEP83Q9Y592 693 aa18.85■□□□□ 0.61
RTN3-205ENST00000356000 USP26Q9BXU7 913 aa18.85■□□□□ 0.61
RTN3-205ENST00000356000 GADD45BO75293 160 aaPredicted RBP18.84■□□□□ 0.61
RTN3-205ENST00000356000 C10orf67Q8IYJ2 551 aa18.84■□□□□ 0.61
RTN3-205ENST00000356000 TRIM66O15016 1216 aa18.84■□□□□ 0.61
RTN3-205ENST00000356000 CT47B1P0C2W7 299 aaPredicted RBP18.84■□□□□ 0.61
RTN3-205ENST00000356000 SPC24Q8NBT2 197 aa18.84■□□□□ 0.61
RTN3-205ENST00000356000 CFAP44Q96MT7 982 aa18.83■□□□□ 0.61
RTN3-205ENST00000356000 CCDC172P0C7W6 258 aa18.83■□□□□ 0.6
RTN3-205ENST00000356000 CLTCL1P53675 1640 aa18.83■□□□□ 0.6
RTN3-205ENST00000356000 MX1P20591 662 aa18.82■□□□□ 0.6
RTN3-205ENST00000356000 PTGS1P23219 599 aa18.82■□□□□ 0.6
RTN3-205ENST00000356000 PLCB2Q00722 1185 aa18.82■□□□□ 0.6
RTN3-205ENST00000356000 NEUROD2Q15784 382 aa18.82■□□□□ 0.6
RTN3-205ENST00000356000 EP400NLQ6ZTU2 488 aa18.82■□□□□ 0.6
RTN3-205ENST00000356000 ZNF215Q9UL58 517 aaPredicted RBP18.82■□□□□ 0.6
RTN3-205ENST00000356000 CCDC27Q2M243 656 aa18.82■□□□□ 0.6
RTN3-205ENST00000356000 TEX35Q5T0J7 233 aa18.82■□□□□ 0.6
RTN3-205ENST00000356000 ATF7IPQ6VMQ6 1270 aa18.82■□□□□ 0.6
RTN3-205ENST00000356000 NEK11Q8NG66 645 aa18.82■□□□□ 0.6
RTN3-205ENST00000356000 RUNDC1Q96C34 613 aa18.82■□□□□ 0.6
RTN3-205ENST00000356000 POLR3AO14802 1390 aaPredicted RBP18.81■□□□□ 0.6
RTN3-205ENST00000356000 CEP152O94986 1710 aa18.81■□□□□ 0.6
RTN3-205ENST00000356000 KRBA2Q6ZNG9 492 aa18.81■□□□□ 0.6
RTN3-205ENST00000356000 ERO1AQ96HE7 468 aa18.81■□□□□ 0.6
RTN3-205ENST00000356000 FUCA2Q9BTY2 467 aa18.81■□□□□ 0.6
RTN3-205ENST00000356000 PTPRCP08575 1304 aa18.81■□□□□ 0.6
RTN3-205ENST00000356000 ANKRD45Q5TZF3 282 aa18.81■□□□□ 0.6
RTN3-205ENST00000356000 IFT57Q9NWB7 429 aa18.81■□□□□ 0.6
RTN3-205ENST00000356000 LCMT1Q9UIC8 334 aa18.81■□□□□ 0.6
RTN3-205ENST00000356000 RRP7AQ9Y3A4 280 aaKnown RBP18.81■□□□□ 0.6
RTN3-205ENST00000356000 ZSCAN21Q9Y5A6 473 aaPredicted RBP18.81■□□□□ 0.6
RTN3-205ENST00000356000 GCC1Q96CN9 775 aa18.8■□□□□ 0.6
RTN3-205ENST00000356000 CFAP65Q6ZU64 1925 aaKnown RBP18.8■□□□□ 0.6
RTN3-205ENST00000356000 RNF20Q5VTR2 975 aa18.8■□□□□ 0.6
RTN3-205ENST00000356000 USP48Q86UV5 1035 aa18.8■□□□□ 0.6
RTN3-205ENST00000356000 TCP11L2Q8N4U5 519 aa18.8■□□□□ 0.6
RTN3-205ENST00000356000 JRKLQ9Y4A0 524 aa18.8■□□□□ 0.6
RTN3-205ENST00000356000 FHOD1Q9Y613 1164 aa18.8■□□□□ 0.6
RTN3-205ENST00000356000 ELF2Q15723 593 aa18.79■□□□□ 0.6
RTN3-205ENST00000356000 TMEM57Q8N5G2 664 aa18.79■□□□□ 0.6
RTN3-205ENST00000356000 RTF1Q92541 710 aaKnown RBP18.79■□□□□ 0.6
RTN3-205ENST00000356000 SMARCA5O60264 1052 aaPredicted RBP18.79■□□□□ 0.6
RTN3-205ENST00000356000 SRPK2P78362 688 aaKnown RBP18.79■□□□□ 0.6
RTN3-205ENST00000356000 CEP135Q66GS9 1140 aa18.79■□□□□ 0.6
RTN3-205ENST00000356000 MED1Q15648 1581 aaPredicted RBP18.78■□□□□ 0.6
RTN3-205ENST00000356000 TMEM87AQ8NBN3 555 aa18.78■□□□□ 0.6
RTN3-205ENST00000356000 GTF3C6Q969F1 213 aa18.78■□□□□ 0.6
RTN3-205ENST00000356000 GOLGA6L1Q8N7Z2 621 aa18.78■□□□□ 0.6
RTN3-205ENST00000356000 H2AFXP16104 143 aaPredicted RBP18.77■□□□□ 0.6
RTN3-205ENST00000356000 PLA2G4AP47712 749 aa18.77■□□□□ 0.6
RTN3-205ENST00000356000 SRLQ86TD4 932 aa18.77■□□□□ 0.6
RTN3-205ENST00000356000 CWC15Q9P013 229 aaKnown RBP18.77■□□□□ 0.6
RTN3-205ENST00000356000 ERBB3P21860 1342 aa18.77■□□□□ 0.6
RTN3-205ENST00000356000 TSGA10IPQ3SY00 556 aa18.77■□□□□ 0.6
RTN3-205ENST00000356000 CCDC191Q8NCU4 936 aa18.77■□□□□ 0.6
RTN3-205ENST00000356000 ZSCAN26Q16670 478 aa18.76■□□□□ 0.59
RTN3-205ENST00000356000 NOL12Q9UGY1 213 aaKnown RBP eCLIP18.76■□□□□ 0.59
RTN3-205ENST00000356000 V9GYY5 206 aaPredicted RBP18.76■□□□□ 0.59
RTN3-205ENST00000356000 MYOM1P52179 1685 aa18.76■□□□□ 0.59
RTN3-205ENST00000356000 GDPD2Q9HCC8 539 aa18.76■□□□□ 0.59
RTN3-205ENST00000356000 LRRFIP2Q9Y608 721 aaKnown RBP18.76■□□□□ 0.59
RTN3-205ENST00000356000 LRRC7Q96NW7 1537 aa18.76■□□□□ 0.59
RTN3-205ENST00000356000 A0A1B0GUL7 405 aa18.75■□□□□ 0.59
RTN3-205ENST00000356000 PATL2C9JE40 543 aaKnown RBP18.75■□□□□ 0.59
RTN3-205ENST00000356000 HTATSF1O43719 755 aaKnown RBP18.75■□□□□ 0.59
RTN3-205ENST00000356000 TPM4P67936 248 aa18.75■□□□□ 0.59
RTN3-205ENST00000356000 TPD52L1Q16890 204 aaPredicted RBP18.75■□□□□ 0.59
RTN3-205ENST00000356000 FBXO31Q5XUX0 539 aaPredicted RBP18.75■□□□□ 0.59
RTN3-205ENST00000356000 CEP120Q8N960 986 aa18.75■□□□□ 0.59
RTN3-205ENST00000356000 TOMM22Q9NS69 142 aa18.75■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms