RNA–Protein interactions for RNA: ENST00000352886.10

SHMT1-202, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2 BASIC

Gene SHMT1, Length 2,437 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-202ENST00000352886 GNAI3P08754 354 aa26.91■■□□□ 1.9
SHMT1-202ENST00000352886 N4BP2Q86UW6 1770 aaPredicted RBP26.91■■□□□ 1.9
SHMT1-202ENST00000352886 CASC1Q6TDU7 716 aa26.9■■□□□ 1.9
SHMT1-202ENST00000352886 EXOC6BQ9Y2D4 811 aa26.9■■□□□ 1.9
SHMT1-202ENST00000352886 ZBTB7CA1YPR0 619 aa26.9■■□□□ 1.9
SHMT1-202ENST00000352886 RGPD2P0DJD1 1756 aa26.9■■□□□ 1.9
SHMT1-202ENST00000352886 USP26Q9BXU7 913 aa26.89■■□□□ 1.9
SHMT1-202ENST00000352886 CIZ1Q9ULV3 898 aaPredicted RBP26.89■■□□□ 1.9
SHMT1-202ENST00000352886 CEMIPQ8WUJ3 1361 aa26.89■■□□□ 1.89
SHMT1-202ENST00000352886 HDGFL1Q5TGJ6 251 aa26.88■■□□□ 1.89
SHMT1-202ENST00000352886 KCNH5Q8NCM2 988 aa26.88■■□□□ 1.89
SHMT1-202ENST00000352886 FOXD4L1Q9NU39 408 aa26.88■■□□□ 1.89
SHMT1-202ENST00000352886 PDE1AP54750 535 aa26.87■■□□□ 1.89
SHMT1-202ENST00000352886 OSBPL3Q9H4L5 887 aa26.87■■□□□ 1.89
SHMT1-202ENST00000352886 PNMA6EA0A0J9YXQ4 647 aa26.87■■□□□ 1.89
SHMT1-202ENST00000352886 PXDNLA1KZ92 1463 aa26.86■■□□□ 1.89
SHMT1-202ENST00000352886 RABEP1Q15276 862 aa26.86■■□□□ 1.89
SHMT1-202ENST00000352886 ATP8B2P98198 1209 aa26.85■■□□□ 1.89
SHMT1-202ENST00000352886 TNPO1Q92973 898 aaKnown RBP26.85■■□□□ 1.89
SHMT1-202ENST00000352886 DDX11L8A8MPP1 907 aa26.85■■□□□ 1.89
SHMT1-202ENST00000352886 TRAK2O60296 914 aa26.85■■□□□ 1.89
SHMT1-202ENST00000352886 PHAXQ9H814 394 aaKnown RBP26.85■■□□□ 1.89
SHMT1-202ENST00000352886 LGR6Q9HBX8 967 aa26.85■■□□□ 1.89
SHMT1-202ENST00000352886 PHRF1Q9P1Y6 1649 aaKnown RBP26.84■■□□□ 1.89
SHMT1-202ENST00000352886 LRRCC1Q9C099 1032 aa26.84■■□□□ 1.89
SHMT1-202ENST00000352886 LRRFIP2Q9Y608 721 aaKnown RBP26.84■■□□□ 1.89
SHMT1-202ENST00000352886 MED1Q15648 1581 aaPredicted RBP26.84■■□□□ 1.89
SHMT1-202ENST00000352886 RAB3GAP1Q15042 981 aa26.84■■□□□ 1.89
SHMT1-202ENST00000352886 LRRC59Q96AG4 307 aaKnown RBP26.83■■□□□ 1.89
SHMT1-202ENST00000352886 RTN4Q9NQC3 1192 aaKnown RBP26.83■■□□□ 1.89
SHMT1-202ENST00000352886 USP44Q9H0E7 712 aa26.82■■□□□ 1.88
SHMT1-202ENST00000352886 KDM3BQ7LBC6 1761 aa26.82■■□□□ 1.88
SHMT1-202ENST00000352886 GZF1Q9H116 711 aaPredicted RBP26.82■■□□□ 1.88
SHMT1-202ENST00000352886 EIF2S2P20042 333 aaKnown RBP26.81■■□□□ 1.88
SHMT1-202ENST00000352886 REC8O95072 547 aa26.81■■□□□ 1.88
SHMT1-202ENST00000352886 EIF4A1P60842 406 aaKnown RBP26.81■■□□□ 1.88
SHMT1-202ENST00000352886 ORAI2Q96SN7 254 aa26.81■■□□□ 1.88
SHMT1-202ENST00000352886 TUBGCP6Q96RT7 1819 aa26.81■■□□□ 1.88
SHMT1-202ENST00000352886 LMO7Q8WWI1 1683 aa26.81■■□□□ 1.88
SHMT1-202ENST00000352886 IBTKQ9P2D0 1353 aaPredicted RBP26.8■■□□□ 1.88
SHMT1-202ENST00000352886 SALL3Q9BXA9 1300 aa26.8■■□□□ 1.88
SHMT1-202ENST00000352886 PLEKHG5O94827 1062 aa26.8■■□□□ 1.88
SHMT1-202ENST00000352886 UBTFL1P0CB47 393 aaPredicted RBP26.8■■□□□ 1.88
SHMT1-202ENST00000352886 XPCQ01831 940 aaPredicted RBP26.8■■□□□ 1.88
SHMT1-202ENST00000352886 TSHZ3Q63HK5 1081 aa26.8■■□□□ 1.88
SHMT1-202ENST00000352886 NPHP4O75161 1426 aaPredicted RBP26.8■■□□□ 1.88
SHMT1-202ENST00000352886 ERC2O15083 957 aa26.79■■□□□ 1.88
SHMT1-202ENST00000352886 ADAMTSL3P82987 1691 aa26.79■■□□□ 1.88
SHMT1-202ENST00000352886 GCP02774 474 aa26.78■■□□□ 1.88
SHMT1-202ENST00000352886 L1TD1Q5T7N2 865 aaKnown RBP26.78■■□□□ 1.88
SHMT1-202ENST00000352886 ZNF530Q6P9A1 599 aaPredicted RBP26.78■■□□□ 1.88
SHMT1-202ENST00000352886 GBP4Q96PP9 640 aa26.78■■□□□ 1.88
SHMT1-202ENST00000352886 MX1P20591 662 aa26.78■■□□□ 1.88
SHMT1-202ENST00000352886 AKAP4Q5JQC9 854 aa26.78■■□□□ 1.88
SHMT1-202ENST00000352886 KCNQ3O43525 872 aa26.77■■□□□ 1.88
SHMT1-202ENST00000352886 TEFQ10587 303 aa26.77■■□□□ 1.88
SHMT1-202ENST00000352886 CHPF2Q9P2E5 772 aa26.76■■□□□ 1.87
SHMT1-202ENST00000352886 HOXB7P09629 217 aa26.76■■□□□ 1.87
SHMT1-202ENST00000352886 PLEKHO1Q53GL0 409 aaPredicted RBP26.76■■□□□ 1.87
SHMT1-202ENST00000352886 SRCIN1Q9C0H9 1055 aa26.76■■□□□ 1.87
SHMT1-202ENST00000352886 MPRIPQ6WCQ1 1025 aa26.75■■□□□ 1.87
SHMT1-202ENST00000352886 ARHGEF25Q86VW2 580 aa26.75■■□□□ 1.87
SHMT1-202ENST00000352886 LMOD2Q6P5Q4 547 aa26.75■■□□□ 1.87
SHMT1-202ENST00000352886 AK9Q5TCS8 1911 aa26.74■■□□□ 1.87
SHMT1-202ENST00000352886 BTBD11A6QL63 1104 aa26.74■■□□□ 1.87
SHMT1-202ENST00000352886 SLIT3O75094 1523 aa26.74■■□□□ 1.87
SHMT1-202ENST00000352886 ARXQ96QS3 562 aa26.73■■□□□ 1.87
SHMT1-202ENST00000352886 GOLGA6L3A6NEY3 463 aa26.73■■□□□ 1.87
SHMT1-202ENST00000352886 AMOTQ4VCS5 1084 aa26.73■■□□□ 1.87
SHMT1-202ENST00000352886 SSH3Q8TE77 659 aa26.73■■□□□ 1.87
SHMT1-202ENST00000352886 PXDNQ92626 1479 aa26.72■■□□□ 1.87
SHMT1-202ENST00000352886 ST18O60284 1047 aa26.71■■□□□ 1.87
SHMT1-202ENST00000352886 FSD2A1L4K1 749 aa26.71■■□□□ 1.87
SHMT1-202ENST00000352886 SSFA2P28290 1259 aa26.71■■□□□ 1.87
SHMT1-202ENST00000352886 C1orf141Q5JVX7 400 aa26.71■■□□□ 1.87
SHMT1-202ENST00000352886 CHMP4AQ9BY43 222 aa26.71■■□□□ 1.87
SHMT1-202ENST00000352886 PI4KAP2A4QPH2 592 aa26.7■■□□□ 1.87
SHMT1-202ENST00000352886 PI4KAP1Q8N8J0 262 aa26.7■■□□□ 1.87
SHMT1-202ENST00000352886 ANKRD24Q8TF21 1146 aa26.7■■□□□ 1.87
SHMT1-202ENST00000352886 STAP2Q9UGK3 403 aa26.7■■□□□ 1.87
SHMT1-202ENST00000352886 NCAPD2Q15021 1401 aa26.7■■□□□ 1.87
SHMT1-202ENST00000352886 PPP1R42Q7Z4L9 355 aa26.7■■□□□ 1.86
SHMT1-202ENST00000352886 TRIM6-TRIM34B2RNG4 842 aa26.69■■□□□ 1.86
SHMT1-202ENST00000352886 ANXA1P04083 346 aa26.69■■□□□ 1.86
SHMT1-202ENST00000352886 DNAAF4Q8WXU2 420 aa26.69■■□□□ 1.86
SHMT1-202ENST00000352886 RILPL2Q969X0 211 aa26.69■■□□□ 1.86
SHMT1-202ENST00000352886 IL1RAPL2Q9NP60 686 aa26.69■■□□□ 1.86
SHMT1-202ENST00000352886 TRPM3Q9HCF6 1732 aaPredicted RBP26.69■■□□□ 1.86
SHMT1-202ENST00000352886 RNMTO43148 476 aaKnown RBP26.69■■□□□ 1.86
SHMT1-202ENST00000352886 ESYT1Q9BSJ8 1104 aa26.69■■□□□ 1.86
SHMT1-202ENST00000352886 NBPF7P0C2Y1 421 aaPredicted RBP26.68■■□□□ 1.86
SHMT1-202ENST00000352886 BEND3Q5T5X7 828 aa26.68■■□□□ 1.86
SHMT1-202ENST00000352886 SURF6O75683 361 aaKnown RBP26.67■■□□□ 1.86
SHMT1-202ENST00000352886 POLA2Q14181 598 aa26.67■■□□□ 1.86
SHMT1-202ENST00000352886 AXIN2Q9Y2T1 843 aa26.67■■□□□ 1.86
SHMT1-202ENST00000352886 SRGAP3O43295 1099 aa26.66■■□□□ 1.86
SHMT1-202ENST00000352886 RGPD5Q99666 1765 aa26.65■■□□□ 1.86
SHMT1-202ENST00000352886 RAB11FIP3O75154 756 aa26.65■■□□□ 1.86
SHMT1-202ENST00000352886 XRCC6P12956 609 aaKnown RBP eCLIP26.65■■□□□ 1.86
SHMT1-202ENST00000352886 CHMLP26374 656 aa26.65■■□□□ 1.86
Retrieved 100 of 20,778 RNA–protein pairs in 9.3 ms