RNA–Protein interactions for RNA: ENST00000348544.4

VPS39-202, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS39, Length 2,661 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-202ENST00000348544 FAM83GA6ND36 823 aa8.21□□□□□ -1.1
VPS39-202ENST00000348544 TPRNQ4KMQ1 711 aa8.21□□□□□ -1.1
VPS39-202ENST00000348544 BBXQ8WY36 941 aaPredicted RBP8.21□□□□□ -1.1
VPS39-202ENST00000348544 MEIS3Q99687 375 aa8.21□□□□□ -1.1
VPS39-202ENST00000348544 ESYT1Q9BSJ8 1104 aa8.21□□□□□ -1.1
VPS39-202ENST00000348544 POLKQ9UBT6 870 aa8.21□□□□□ -1.1
VPS39-202ENST00000348544 ABCA9Q8IUA7 1624 aa8.21□□□□□ -1.1
VPS39-202ENST00000348544 CHD1O14646 1710 aa8.2□□□□□ -1.1
VPS39-202ENST00000348544 DLG5Q8TDM6 1919 aa8.2□□□□□ -1.1
VPS39-202ENST00000348544 MX1P20591 662 aa8.2□□□□□ -1.1
VPS39-202ENST00000348544 UPF3BQ9BZI7 483 aaKnown RBP8.2□□□□□ -1.1
VPS39-202ENST00000348544 OSBPL3Q9H4L5 887 aa8.2□□□□□ -1.1
VPS39-202ENST00000348544 KIF20BQ96Q89 1820 aa8.2□□□□□ -1.1
VPS39-202ENST00000348544 NCBP1Q09161 790 aaKnown RBP8.2□□□□□ -1.1
VPS39-202ENST00000348544 TERF2IPQ9NYB0 399 aa8.2□□□□□ -1.1
VPS39-202ENST00000348544 NEXMIFQ5QGS0 1516 aa8.2□□□□□ -1.1
VPS39-202ENST00000348544 RIMS2Q9UQ26 1411 aa8.2□□□□□ -1.1
VPS39-202ENST00000348544 RPGRIP1LQ68CZ1 1315 aa8.2□□□□□ -1.1
VPS39-202ENST00000348544 WDR33Q9C0J8 1336 aaKnown RBP8.2□□□□□ -1.1
VPS39-202ENST00000348544 DCTN1Q14203 1278 aa8.19□□□□□ -1.1
VPS39-202ENST00000348544 DIAPH3Q9NSV4 1193 aa8.19□□□□□ -1.1
VPS39-202ENST00000348544 TMEM51Q9NW97 253 aa8.19□□□□□ -1.1
VPS39-202ENST00000348544 STK26Q9P289 416 aa8.19□□□□□ -1.1
VPS39-202ENST00000348544 KIDINS220Q9ULH0 1771 aa8.19□□□□□ -1.1
VPS39-202ENST00000348544 MINK1Q8N4C8 1332 aaPredicted RBP8.19□□□□□ -1.1
VPS39-202ENST00000348544 SALL3Q9BXA9 1300 aa8.19□□□□□ -1.1
VPS39-202ENST00000348544 PLCB2Q00722 1185 aa8.19□□□□□ -1.1
VPS39-202ENST00000348544 GIMAP6Q6P9H5 292 aa8.19□□□□□ -1.1
VPS39-202ENST00000348544 SPC24Q8NBT2 197 aa8.19□□□□□ -1.1
VPS39-202ENST00000348544 IL17RAQ96F46 866 aa8.19□□□□□ -1.1
VPS39-202ENST00000348544 PTPRMP28827 1452 aa8.19□□□□□ -1.1
VPS39-202ENST00000348544 ANAPC15P60006 121 aa8.18□□□□□ -1.1
VPS39-202ENST00000348544 IL25Q9H293 177 aa8.18□□□□□ -1.1
VPS39-202ENST00000348544 CLTCQ00610 1675 aaKnown RBP8.18□□□□□ -1.1
VPS39-202ENST00000348544 ASXL2Q76L83 1435 aa8.18□□□□□ -1.1
VPS39-202ENST00000348544 FEZ1Q99689 392 aa8.18□□□□□ -1.1
VPS39-202ENST00000348544 ANO2Q9NQ90 1003 aa8.18□□□□□ -1.1
VPS39-202ENST00000348544 OGFRQ9NZT2 677 aa8.18□□□□□ -1.1
VPS39-202ENST00000348544 CTNNA3Q9UI47 895 aa8.18□□□□□ -1.1
VPS39-202ENST00000348544 UHRF1BP1LA0JNW5 1464 aa8.18□□□□□ -1.1
VPS39-202ENST00000348544 KIAA0232Q92628 1395 aa8.18□□□□□ -1.1
VPS39-202ENST00000348544 PIK3C2BO00750 1634 aa8.18□□□□□ -1.1
VPS39-202ENST00000348544 CHMLP26374 656 aa8.17□□□□□ -1.1
VPS39-202ENST00000348544 IL13P35225 146 aa8.17□□□□□ -1.1
VPS39-202ENST00000348544 UBE2HP62256 183 aa8.17□□□□□ -1.1
VPS39-202ENST00000348544 CHAF1AQ13111 956 aaPredicted RBP8.17□□□□□ -1.1
VPS39-202ENST00000348544 NAA30Q147X3 362 aaPredicted RBP8.17□□□□□ -1.1
VPS39-202ENST00000348544 CGNQ9P2M7 1197 aaKnown RBP8.17□□□□□ -1.1
VPS39-202ENST00000348544 EMILIN1Q9Y6C2 1016 aa8.17□□□□□ -1.1
VPS39-202ENST00000348544 FRMPD1Q5SYB0 1578 aa8.17□□□□□ -1.1
VPS39-202ENST00000348544 CPSF1Q10570 1443 aaKnown RBP8.17□□□□□ -1.1
VPS39-202ENST00000348544 YTHDC2Q9H6S0 1430 aaKnown RBP8.17□□□□□ -1.1
VPS39-202ENST00000348544 SIGLEC1Q9BZZ2 1709 aa8.17□□□□□ -1.1
VPS39-202ENST00000348544 MYCNP04198 464 aaPredicted RBP8.17□□□□□ -1.1
VPS39-202ENST00000348544 ZSCAN22P10073 491 aaPredicted RBP8.17□□□□□ -1.1
VPS39-202ENST00000348544 SUGP2Q8IX01 1082 aaKnown RBP eCLIP8.17□□□□□ -1.1
VPS39-202ENST00000348544 MAP2P11137 1827 aaKnown RBP8.17□□□□□ -1.1
VPS39-202ENST00000348544 FIBPO43427 364 aa8.16□□□□□ -1.1
VPS39-202ENST00000348544 PTGS1P23219 599 aa8.16□□□□□ -1.1
VPS39-202ENST00000348544 MCCP23508 829 aa8.16□□□□□ -1.1
VPS39-202ENST00000348544 ZNF771Q7L3S4 317 aaPredicted RBP8.16□□□□□ -1.1
VPS39-202ENST00000348544 UNC5CLQ8IV45 518 aa8.16□□□□□ -1.1
VPS39-202ENST00000348544 CABP1Q9NZU7 370 aa8.16□□□□□ -1.1
VPS39-202ENST00000348544 VGFO15240 615 aaPredicted RBP8.16□□□□□ -1.1
VPS39-202ENST00000348544 DTNBO60941 627 aa8.16□□□□□ -1.1
VPS39-202ENST00000348544 SLFN14P0C7P3 912 aa8.16□□□□□ -1.1
VPS39-202ENST00000348544 HDGFL2Q7Z4V5 671 aaPredicted RBP8.16□□□□□ -1.1
VPS39-202ENST00000348544 EXOC6BQ9Y2D4 811 aa8.16□□□□□ -1.1
VPS39-202ENST00000348544 SSH2Q76I76 1423 aa8.16□□□□□ -1.1
VPS39-202ENST00000348544 SYT1P21579 422 aa8.16□□□□□ -1.1
VPS39-202ENST00000348544 ABCF1Q8NE71 845 aaKnown RBP eCLIP8.16□□□□□ -1.1
VPS39-202ENST00000348544 PRAM1Q96QH2 718 aa8.16□□□□□ -1.1
VPS39-202ENST00000348544 DDX41Q9UJV9 622 aaKnown RBP8.16□□□□□ -1.1
VPS39-202ENST00000348544 HECW2Q9P2P5 1572 aa8.15□□□□□ -1.1
VPS39-202ENST00000348544 F13A1P00488 732 aa8.15□□□□□ -1.1
VPS39-202ENST00000348544 TPM3P06753 285 aa8.15□□□□□ -1.1
VPS39-202ENST00000348544 GABPB1Q06547 395 aaPredicted RBP8.15□□□□□ -1.1
VPS39-202ENST00000348544 LRMPQ12912 555 aa8.15□□□□□ -1.1
VPS39-202ENST00000348544 LARP6Q9BRS8 491 aaKnown RBP8.15□□□□□ -1.1
VPS39-202ENST00000348544 STX6O43752 255 aa8.15□□□□□ -1.11
VPS39-202ENST00000348544 SYCP1Q15431 976 aa8.15□□□□□ -1.11
VPS39-202ENST00000348544 TAF3Q5VWG9 929 aa8.15□□□□□ -1.11
VPS39-202ENST00000348544 RILPL2Q969X0 211 aa8.15□□□□□ -1.11
VPS39-202ENST00000348544 C16orf45Q96MC5 204 aaPredicted RBP8.15□□□□□ -1.11
VPS39-202ENST00000348544 HMMRO75330 724 aa8.14□□□□□ -1.11
VPS39-202ENST00000348544 HSPA4P34932 840 aa8.14□□□□□ -1.11
VPS39-202ENST00000348544 LMOD3Q0VAK6 560 aa8.14□□□□□ -1.11
VPS39-202ENST00000348544 TTC14Q96N46 770 aa8.14□□□□□ -1.11
VPS39-202ENST00000348544 U3KPZ7 1027 aaPredicted RBP8.14□□□□□ -1.11
VPS39-202ENST00000348544 CDK12Q9NYV4 1490 aaPredicted RBP8.14□□□□□ -1.11
VPS39-202ENST00000348544 PTPRCP08575 1304 aa8.14□□□□□ -1.11
VPS39-202ENST00000348544 SMTNL1A8MU46 457 aa8.14□□□□□ -1.11
VPS39-202ENST00000348544 TRIM6-TRIM34B2RNG4 842 aa8.14□□□□□ -1.11
VPS39-202ENST00000348544 F6X3S4 739 aa8.14□□□□□ -1.11
VPS39-202ENST00000348544 DNM1Q05193 864 aaKnown RBP8.14□□□□□ -1.11
VPS39-202ENST00000348544 GGT6Q6P531 493 aa8.14□□□□□ -1.11
VPS39-202ENST00000348544 RUFY3Q7L099 469 aa8.14□□□□□ -1.11
VPS39-202ENST00000348544 CDK19Q9BWU1 502 aa8.14□□□□□ -1.11
VPS39-202ENST00000348544 NRBP1Q9UHY1 535 aa8.14□□□□□ -1.11
VPS39-202ENST00000348544 MORC2Q9Y6X9 1032 aaPredicted RBP8.14□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms