RNA–Protein interactions for RNA: ENST00000345734.7

ATG4A-202, Transcript of autophagy related 4A cysteine peptidase, humanhuman

TSL 1 (best) BASIC

Gene ATG4A, Length 2,129 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4A-202ENST00000345734 GABBR2O75899 941 aa11.94□□□□□ -0.5
ATG4A-202ENST00000345734 NEFMP07197 916 aa11.94□□□□□ -0.5
ATG4A-202ENST00000345734 PRIM1P49642 420 aaKnown RBP11.94□□□□□ -0.5
ATG4A-202ENST00000345734 ABTB2Q8N961 1025 aa11.94□□□□□ -0.5
ATG4A-202ENST00000345734 STRCP1A6NGW2 1772 aa11.94□□□□□ -0.5
ATG4A-202ENST00000345734 RARSP54136 660 aaKnown RBP11.93□□□□□ -0.5
ATG4A-202ENST00000345734 CCDC102AQ96A19 550 aa11.93□□□□□ -0.5
ATG4A-202ENST00000345734 RGPD1P0DJD0 1748 aa11.93□□□□□ -0.5
ATG4A-202ENST00000345734 USP54Q70EL1 1684 aa11.93□□□□□ -0.5
ATG4A-202ENST00000345734 SULT6B1Q6IMI4 303 aa11.93□□□□□ -0.5
ATG4A-202ENST00000345734 IL16Q14005 1332 aa11.92□□□□□ -0.5
ATG4A-202ENST00000345734 OXER1Q8TDS5 423 aa11.92□□□□□ -0.5
ATG4A-202ENST00000345734 ORAI2Q96SN7 254 aa11.92□□□□□ -0.5
ATG4A-202ENST00000345734 THUMPD2Q9BTF0 503 aaKnown RBP11.92□□□□□ -0.5
ATG4A-202ENST00000345734 SBNO1A3KN83 1393 aa11.92□□□□□ -0.5
ATG4A-202ENST00000345734 KDM4FA0A1W2PPD8 638 aa11.92□□□□□ -0.5
ATG4A-202ENST00000345734 EXOSC9Q06265 439 aaKnown RBP11.92□□□□□ -0.5
ATG4A-202ENST00000345734 PSME1Q06323 249 aa11.92□□□□□ -0.5
ATG4A-202ENST00000345734 L3MBTL3Q96JM7 780 aaPredicted RBP11.92□□□□□ -0.5
ATG4A-202ENST00000345734 BCL2L13Q9BXK5 485 aa11.92□□□□□ -0.5
ATG4A-202ENST00000345734 FAM117AQ9C073 453 aa11.92□□□□□ -0.5
ATG4A-202ENST00000345734 FLT4P35916 1363 aa11.91□□□□□ -0.5
ATG4A-202ENST00000345734 AMPHP49418 695 aa11.91□□□□□ -0.5
ATG4A-202ENST00000345734 DCBLD2Q96PD2 775 aa11.91□□□□□ -0.5
ATG4A-202ENST00000345734 CLCN6P51797 869 aa11.9□□□□□ -0.5
ATG4A-202ENST00000345734 XPCQ01831 940 aaPredicted RBP11.9□□□□□ -0.5
ATG4A-202ENST00000345734 FRAT1Q92837 279 aaPredicted RBP11.9□□□□□ -0.5
ATG4A-202ENST00000345734 POTEFA5A3E0 1075 aa11.89□□□□□ -0.51
ATG4A-202ENST00000345734 FOXO3O43524 673 aa11.89□□□□□ -0.51
ATG4A-202ENST00000345734 EVI5O60447 810 aa11.89□□□□□ -0.51
ATG4A-202ENST00000345734 CANXP27824 592 aaKnown RBP11.89□□□□□ -0.51
ATG4A-202ENST00000345734 LAS1LQ9Y4W2 734 aaKnown RBP11.89□□□□□ -0.51
ATG4A-202ENST00000345734 LTN1O94822 1766 aa11.89□□□□□ -0.51
ATG4A-202ENST00000345734 FAM83GA6ND36 823 aa11.89□□□□□ -0.51
ATG4A-202ENST00000345734 PANK1Q8TE04 598 aa11.89□□□□□ -0.51
ATG4A-202ENST00000345734 TNNQ9UQP3 1299 aa11.89□□□□□ -0.51
ATG4A-202ENST00000345734 HOXC9P31274 260 aa11.88□□□□□ -0.51
ATG4A-202ENST00000345734 C19orf44Q9H6X5 657 aa11.88□□□□□ -0.51
ATG4A-202ENST00000345734 ARHGEF10O15013 1369 aa11.88□□□□□ -0.51
ATG4A-202ENST00000345734 TMEM94Q12767 1356 aa11.88□□□□□ -0.51
ATG4A-202ENST00000345734 MAP2K5Q13163 448 aa11.87□□□□□ -0.51
ATG4A-202ENST00000345734 DCTN1Q14203 1278 aa11.87□□□□□ -0.51
ATG4A-202ENST00000345734 C1orf167Q5SNV9 1468 aa11.87□□□□□ -0.51
ATG4A-202ENST00000345734 GNPATO15228 680 aa11.87□□□□□ -0.51
ATG4A-202ENST00000345734 CT47B1P0C2W7 299 aaPredicted RBP11.87□□□□□ -0.51
ATG4A-202ENST00000345734 PDE3AQ14432 1141 aa11.87□□□□□ -0.51
ATG4A-202ENST00000345734 EYA1Q99502 592 aa11.87□□□□□ -0.51
ATG4A-202ENST00000345734 IRF6O14896 467 aa11.86□□□□□ -0.51
ATG4A-202ENST00000345734 RBM19Q9Y4C8 960 aaKnown RBP11.86□□□□□ -0.51
ATG4A-202ENST00000345734 STRCQ7RTU9 1775 aa11.86□□□□□ -0.51
ATG4A-202ENST00000345734 NFAT5O94916 1531 aa11.86□□□□□ -0.51
ATG4A-202ENST00000345734 LMTK3Q96Q04 1460 aa11.86□□□□□ -0.51
ATG4A-202ENST00000345734 RLBP1P12271 317 aa11.86□□□□□ -0.51
ATG4A-202ENST00000345734 SSH1Q8WYL5 1049 aa11.86□□□□□ -0.51
ATG4A-202ENST00000345734 LTV1Q96GA3 475 aaPredicted RBP11.86□□□□□ -0.51
ATG4A-202ENST00000345734 COG6Q9Y2V7 657 aa11.86□□□□□ -0.51
ATG4A-202ENST00000345734 TRPM3Q9HCF6 1732 aaPredicted RBP11.85□□□□□ -0.51
ATG4A-202ENST00000345734 IGSF1Q8N6C5 1336 aa11.85□□□□□ -0.51
ATG4A-202ENST00000345734 TBC1D12O60347 775 aa11.85□□□□□ -0.51
ATG4A-202ENST00000345734 ZNF853P0CG23 659 aa11.85□□□□□ -0.51
ATG4A-202ENST00000345734 LMOD3Q0VAK6 560 aa11.85□□□□□ -0.51
ATG4A-202ENST00000345734 IFT57Q9NWB7 429 aa11.85□□□□□ -0.51
ATG4A-202ENST00000345734 KDRP35968 1356 aa11.85□□□□□ -0.51
ATG4A-202ENST00000345734 KIF24Q5T7B8 1368 aa11.85□□□□□ -0.51
ATG4A-202ENST00000345734 ATF3P18847 181 aa11.84□□□□□ -0.51
ATG4A-202ENST00000345734 CALD1Q05682 793 aaKnown RBP11.84□□□□□ -0.51
ATG4A-202ENST00000345734 PARP9Q8IXQ6 854 aa11.84□□□□□ -0.51
ATG4A-202ENST00000345734 MBIPQ9NS73 344 aa11.84□□□□□ -0.51
ATG4A-202ENST00000345734 SMC4Q9NTJ3 1288 aa11.84□□□□□ -0.51
ATG4A-202ENST00000345734 KIF1AQ12756 1690 aa11.84□□□□□ -0.51
ATG4A-202ENST00000345734 GNAI1P63096 354 aa11.84□□□□□ -0.51
ATG4A-202ENST00000345734 KRT28Q7Z3Y7 464 aa11.84□□□□□ -0.51
ATG4A-202ENST00000345734 XIRP1Q702N8 1843 aaKnown RBP11.84□□□□□ -0.51
ATG4A-202ENST00000345734 MST1RQ04912 1400 aa11.84□□□□□ -0.51
ATG4A-202ENST00000345734 KDM2BQ8NHM5 1336 aa11.84□□□□□ -0.51
ATG4A-202ENST00000345734 ZBTB7CA1YPR0 619 aa11.83□□□□□ -0.52
ATG4A-202ENST00000345734 MCM10Q7L590 875 aa11.83□□□□□ -0.52
ATG4A-202ENST00000345734 CLUAP1Q96AJ1 413 aa11.83□□□□□ -0.52
ATG4A-202ENST00000345734 MTHFSDQ2M296 383 aaKnown RBP11.83□□□□□ -0.52
ATG4A-202ENST00000345734 C3orf67Q6ZVT6 689 aa11.83□□□□□ -0.52
ATG4A-202ENST00000345734 SKAP1Q86WV1 359 aa11.83□□□□□ -0.52
ATG4A-202ENST00000345734 TSPYL6Q8N831 410 aa11.83□□□□□ -0.52
ATG4A-202ENST00000345734 DDX17Q92841 729 aaKnown RBP11.83□□□□□ -0.52
ATG4A-202ENST00000345734 CDHR5Q9HBB8 845 aa11.83□□□□□ -0.52
ATG4A-202ENST00000345734 RTL1A6NKG5 1358 aa11.82□□□□□ -0.52
ATG4A-202ENST00000345734 TTLL12Q14166 644 aaPredicted RBP11.82□□□□□ -0.52
ATG4A-202ENST00000345734 HIC1Q14526 733 aa11.82□□□□□ -0.52
ATG4A-202ENST00000345734 ZKSCAN2Q63HK3 967 aa11.82□□□□□ -0.52
ATG4A-202ENST00000345734 IP6K1Q92551 441 aa11.82□□□□□ -0.52
ATG4A-202ENST00000345734 METRNQ9UJH8 293 aa11.82□□□□□ -0.52
ATG4A-202ENST00000345734 RGPD2P0DJD1 1756 aa11.82□□□□□ -0.52
ATG4A-202ENST00000345734 PTGER2P43116 358 aa11.81□□□□□ -0.52
ATG4A-202ENST00000345734 USHBP1Q8N6Y0 703 aa11.81□□□□□ -0.52
ATG4A-202ENST00000345734 KCNH5Q8NCM2 988 aa11.81□□□□□ -0.52
ATG4A-202ENST00000345734 NOB1Q9ULX3 412 aaKnown RBP11.81□□□□□ -0.52
ATG4A-202ENST00000345734 ELL2O00472 640 aaPredicted RBP11.81□□□□□ -0.52
ATG4A-202ENST00000345734 VAMP4O75379 141 aa11.81□□□□□ -0.52
ATG4A-202ENST00000345734 PTGDRQ13258 359 aa11.81□□□□□ -0.52
ATG4A-202ENST00000345734 DCCP43146 1447 aa11.81□□□□□ -0.52
ATG4A-202ENST00000345734 NCOA3Q9Y6Q9 1424 aa11.81□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms