RNA–Protein interactions for RNA: ENST00000343524.9

ATG4A-201, Transcript of autophagy related 4A cysteine peptidase, humanhuman

TSL 2

Gene ATG4A, Length 1,941 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4A-201ENST00000343524 CDC42BPAQ5VT25 1732 aa9.9□□□□□ -0.82
ATG4A-201ENST00000343524 ST18O60284 1047 aa9.9□□□□□ -0.82
ATG4A-201ENST00000343524 CYP2E1P05181 493 aaPredicted RBP9.9□□□□□ -0.82
ATG4A-201ENST00000343524 IRX3P78415 501 aaPredicted RBP9.9□□□□□ -0.82
ATG4A-201ENST00000343524 IFNLR1Q8IU57 520 aaPredicted RBP9.9□□□□□ -0.82
ATG4A-201ENST00000343524 TEX2Q8IWB9 1127 aa9.9□□□□□ -0.82
ATG4A-201ENST00000343524 WWC1Q8IX03 1113 aa9.9□□□□□ -0.82
ATG4A-201ENST00000343524 PDCD7Q8N8D1 485 aaKnown RBP9.9□□□□□ -0.82
ATG4A-201ENST00000343524 POLR3AO14802 1390 aaPredicted RBP9.9□□□□□ -0.82
ATG4A-201ENST00000343524 AFF2P51816 1311 aa9.9□□□□□ -0.82
ATG4A-201ENST00000343524 CCDC146Q8IYE0 955 aa9.9□□□□□ -0.83
ATG4A-201ENST00000343524 DZIP1LQ8IYY4 767 aaKnown RBP9.9□□□□□ -0.83
ATG4A-201ENST00000343524 ZNF830Q96NB3 372 aaPredicted RBP9.9□□□□□ -0.83
ATG4A-201ENST00000343524 CLTCL1P53675 1640 aa9.89□□□□□ -0.83
ATG4A-201ENST00000343524 INO80Q9ULG1 1556 aaPredicted RBP9.89□□□□□ -0.83
ATG4A-201ENST00000343524 CCDC125Q86Z20 511 aa9.89□□□□□ -0.83
ATG4A-201ENST00000343524 SLAIN2Q9P270 581 aa9.89□□□□□ -0.83
ATG4A-201ENST00000343524 CFDP1Q9UEE9 299 aaPredicted RBP9.89□□□□□ -0.83
ATG4A-201ENST00000343524 GPATCH8Q9UKJ3 1502 aaKnown RBP9.88□□□□□ -0.83
ATG4A-201ENST00000343524 CCDC27Q2M243 656 aa9.88□□□□□ -0.83
ATG4A-201ENST00000343524 GAS2L2Q8NHY3 880 aa9.88□□□□□ -0.83
ATG4A-201ENST00000343524 ANKRD36BQ8N2N9 1353 aa9.88□□□□□ -0.83
ATG4A-201ENST00000343524 UNC13BO14795 1591 aa9.88□□□□□ -0.83
ATG4A-201ENST00000343524 ARHGEF5Q12774 1597 aa9.88□□□□□ -0.83
ATG4A-201ENST00000343524 CTIFO43310 598 aaKnown RBP9.88□□□□□ -0.83
ATG4A-201ENST00000343524 ZNF644Q9H582 1327 aaPredicted RBP9.87□□□□□ -0.83
ATG4A-201ENST00000343524 SYCE3A1L190 88 aa9.87□□□□□ -0.83
ATG4A-201ENST00000343524 RLBP1P12271 317 aa9.87□□□□□ -0.83
ATG4A-201ENST00000343524 PSEN1P49768 467 aa9.87□□□□□ -0.83
ATG4A-201ENST00000343524 NUCB1Q02818 461 aa9.87□□□□□ -0.83
ATG4A-201ENST00000343524 KIF2CQ99661 725 aa9.87□□□□□ -0.83
ATG4A-201ENST00000343524 QTRT2Q9H974 415 aaKnown RBP9.87□□□□□ -0.83
ATG4A-201ENST00000343524 GOLGA6L6A8MZA4 724 aa9.86□□□□□ -0.83
ATG4A-201ENST00000343524 YY1P25490 414 aa9.86□□□□□ -0.83
ATG4A-201ENST00000343524 VGLL3A8MV65 326 aa9.86□□□□□ -0.83
ATG4A-201ENST00000343524 U2AF2P26368 475 aaKnown RBP eCLIP9.86□□□□□ -0.832e-7■□□□□ 9.2
ATG4A-201ENST00000343524 KCNJ4P48050 445 aa9.86□□□□□ -0.83
ATG4A-201ENST00000343524 SPOCK2Q92563 424 aa9.86□□□□□ -0.83
ATG4A-201ENST00000343524 RUNDC1Q96C34 613 aa9.86□□□□□ -0.83
ATG4A-201ENST00000343524 YY1AP1Q9H869 796 aa9.86□□□□□ -0.83
ATG4A-201ENST00000343524 CEP152O94986 1710 aa9.85□□□□□ -0.83
ATG4A-201ENST00000343524 SYCP2Q9BX26 1530 aa9.85□□□□□ -0.83
ATG4A-201ENST00000343524 PRPF40AO75400 957 aaKnown RBP9.85□□□□□ -0.83
ATG4A-201ENST00000343524 CDC45O75419 566 aa9.85□□□□□ -0.83
ATG4A-201ENST00000343524 KCNA6P17658 529 aa9.85□□□□□ -0.83
ATG4A-201ENST00000343524 HAP1P54257 671 aaPredicted RBP9.85□□□□□ -0.83
ATG4A-201ENST00000343524 PROSER2Q86WR7 435 aaPredicted RBP9.85□□□□□ -0.83
ATG4A-201ENST00000343524 GPT2Q8TD30 523 aa9.85□□□□□ -0.83
ATG4A-201ENST00000343524 DUOX2Q9NRD8 1548 aa9.85□□□□□ -0.83
ATG4A-201ENST00000343524 MSH6P52701 1360 aa9.85□□□□□ -0.83
ATG4A-201ENST00000343524 AHDC1Q5TGY3 1603 aaPredicted RBP9.84□□□□□ -0.83
ATG4A-201ENST00000343524 TULP2O00295 520 aa9.84□□□□□ -0.83
ATG4A-201ENST00000343524 LTKP29376 864 aa9.84□□□□□ -0.83
ATG4A-201ENST00000343524 MKRN3Q13064 507 aaKnown RBP9.84□□□□□ -0.83
ATG4A-201ENST00000343524 PAXIP1Q6ZW49 1069 aaPredicted RBP9.84□□□□□ -0.83
ATG4A-201ENST00000343524 CDAN1Q8IWY9 1227 aa9.84□□□□□ -0.83
ATG4A-201ENST00000343524 KRT222Q8N1A0 295 aa9.84□□□□□ -0.83
ATG4A-201ENST00000343524 GCC1Q96CN9 775 aa9.84□□□□□ -0.83
ATG4A-201ENST00000343524 NGLY1Q96IV0 654 aa9.84□□□□□ -0.83
ATG4A-201ENST00000343524 TMEM63CQ9P1W3 806 aa9.84□□□□□ -0.83
ATG4A-201ENST00000343524 ARHGAP23Q9P227 1491 aa9.84□□□□□ -0.83
ATG4A-201ENST00000343524 ABCC3O15438 1527 aa9.84□□□□□ -0.83
ATG4A-201ENST00000343524 ABCC11Q96J66 1382 aa9.84□□□□□ -0.83
ATG4A-201ENST00000343524 NHSL1Q5SYE7 1610 aa9.84□□□□□ -0.83
ATG4A-201ENST00000343524 IQGAP3Q86VI3 1631 aa9.84□□□□□ -0.83
ATG4A-201ENST00000343524 CHD1LQ86WJ1 897 aa9.84□□□□□ -0.83
ATG4A-201ENST00000343524 DDX41Q9UJV9 622 aaKnown RBP9.84□□□□□ -0.83
ATG4A-201ENST00000343524 MORC2Q9Y6X9 1032 aaPredicted RBP9.84□□□□□ -0.83
ATG4A-201ENST00000343524 NWD1Q149M9 1564 aa9.83□□□□□ -0.84
ATG4A-201ENST00000343524 HNRNPMP52272 730 aaKnown RBP eCLIP9.83□□□□□ -0.84
ATG4A-201ENST00000343524 EFCC1Q9HA90 598 aa9.83□□□□□ -0.84
ATG4A-201ENST00000343524 ADGRB2O60241 1585 aa9.83□□□□□ -0.84
ATG4A-201ENST00000343524 KIAA1210Q9ULL0 1709 aa9.83□□□□□ -0.84
ATG4A-201ENST00000343524 SLIT1O75093 1534 aa9.82□□□□□ -0.84
ATG4A-201ENST00000343524 RIOK3O14730 519 aaKnown RBP9.82□□□□□ -0.84
ATG4A-201ENST00000343524 CD2BP2O95400 341 aaKnown RBP9.82□□□□□ -0.84
ATG4A-201ENST00000343524 SLFN14P0C7P3 912 aa9.82□□□□□ -0.84
ATG4A-201ENST00000343524 TERF2Q15554 542 aa9.82□□□□□ -0.84
ATG4A-201ENST00000343524 TXNDC2Q86VQ3 553 aa9.82□□□□□ -0.84
ATG4A-201ENST00000343524 DIP2AQ14689 1571 aa9.82□□□□□ -0.84
ATG4A-201ENST00000343524 SMTNL1A8MU46 457 aa9.82□□□□□ -0.84
ATG4A-201ENST00000343524 IPO8O15397 1037 aaKnown RBP9.82□□□□□ -0.84
ATG4A-201ENST00000343524 PDAP1Q13442 181 aaKnown RBP9.82□□□□□ -0.84
ATG4A-201ENST00000343524 CTR9Q6PD62 1173 aa9.82□□□□□ -0.84
ATG4A-201ENST00000343524 ITPRIPQ8IWB1 547 aa9.82□□□□□ -0.84
ATG4A-201ENST00000343524 RBM27Q9P2N5 1060 aaKnown RBP9.82□□□□□ -0.84
ATG4A-201ENST00000343524 USP25Q9UHP3 1055 aa9.82□□□□□ -0.84
ATG4A-201ENST00000343524 CTNNA3Q9UI47 895 aa9.82□□□□□ -0.84
ATG4A-201ENST00000343524 UBR1Q8IWV7 1749 aa9.82□□□□□ -0.84
ATG4A-201ENST00000343524 MCM2P49736 904 aa9.81□□□□□ -0.84
ATG4A-201ENST00000343524 TBC1D9Q6ZT07 1266 aa9.81□□□□□ -0.84
ATG4A-201ENST00000343524 RNF214Q8ND24 703 aa9.81□□□□□ -0.84
ATG4A-201ENST00000343524 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP9.81□□□□□ -0.84
ATG4A-201ENST00000343524 MYOM2P54296 1465 aa9.81□□□□□ -0.84
ATG4A-201ENST00000343524 USP32Q8NFA0 1604 aa9.81□□□□□ -0.84
ATG4A-201ENST00000343524 SPHKAPQ2M3C7 1700 aa9.81□□□□□ -0.84
ATG4A-201ENST00000343524 TSPY4P0CV99 314 aa9.8□□□□□ -0.84
ATG4A-201ENST00000343524 TSPY10P0CW01 314 aa9.8□□□□□ -0.84
ATG4A-201ENST00000343524 CASC1Q6TDU7 716 aa9.8□□□□□ -0.84
ATG4A-201ENST00000343524 ATF7IPQ6VMQ6 1270 aa9.8□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 67.4 ms