RNA–Protein interactions for RNA: ENST00000340993.10

TUBD1-202, Transcript of tubulin delta 1, humanhuman

TSL 1 (best) BASIC

Gene TUBD1, Length 1,769 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TUBD1-202ENST00000340993 PALLDQ8WX93 1383 aa17.43■□□□□ 0.38
TUBD1-202ENST00000340993 PLEKHG2Q9H7P9 1386 aa17.43■□□□□ 0.38
TUBD1-202ENST00000340993 ERVV-2B6SEH9 535 aa17.43■□□□□ 0.38
TUBD1-202ENST00000340993 TMPOP42166 694 aaKnown RBP17.43■□□□□ 0.38
TUBD1-202ENST00000340993 TEFQ10587 303 aa17.43■□□□□ 0.38
TUBD1-202ENST00000340993 TXNRD1Q16881 649 aa17.43■□□□□ 0.38
TUBD1-202ENST00000340993 PROM2Q8N271 834 aa17.43■□□□□ 0.38
TUBD1-202ENST00000340993 RBM42Q9BTD8 480 aaKnown RBP17.43■□□□□ 0.38
TUBD1-202ENST00000340993 SLC52A2Q9HAB3 445 aa17.43■□□□□ 0.38
TUBD1-202ENST00000340993 NUP188Q5SRE5 1749 aa17.42■□□□□ 0.38
TUBD1-202ENST00000340993 PTCD1O75127 700 aaKnown RBP17.42■□□□□ 0.38
TUBD1-202ENST00000340993 MIS18AQ9NYP9 233 aa17.42■□□□□ 0.38
TUBD1-202ENST00000340993 RREB1Q92766 1687 aa17.41■□□□□ 0.38
TUBD1-202ENST00000340993 ATG3Q9NT62 314 aa17.41■□□□□ 0.38
TUBD1-202ENST00000340993 LRRC4BQ9NT99 713 aa17.4■□□□□ 0.38
TUBD1-202ENST00000340993 CCNL1Q9UK58 526 aaPredicted RBP17.4■□□□□ 0.38
TUBD1-202ENST00000340993 LY75O60449 1722 aa17.4■□□□□ 0.38
TUBD1-202ENST00000340993 SIPA1L3O60292 1781 aaPredicted RBP17.4■□□□□ 0.38
TUBD1-202ENST00000340993 ADAMTS7Q9UKP4 1686 aa17.4■□□□□ 0.38
TUBD1-202ENST00000340993 PSDA5PKW4 1024 aaPredicted RBP17.4■□□□□ 0.38
TUBD1-202ENST00000340993 PLSCR1O15162 318 aa17.39■□□□□ 0.37
TUBD1-202ENST00000340993 LAS1LQ9Y4W2 734 aaKnown RBP17.39■□□□□ 0.37
TUBD1-202ENST00000340993 SRCAPQ6ZRS2 3230 aa17.39■□□□□ 0.37
TUBD1-202ENST00000340993 KCNQ3O43525 872 aa17.38■□□□□ 0.37
TUBD1-202ENST00000340993 RGPD3A6NKT7 1758 aaPredicted RBP17.38■□□□□ 0.37
TUBD1-202ENST00000340993 RGPD4Q7Z3J3 1758 aa17.38■□□□□ 0.37
TUBD1-202ENST00000340993 MRC1P22897 1456 aa17.38■□□□□ 0.37
TUBD1-202ENST00000340993 ANO8Q9HCE9 1232 aaPredicted RBP17.38■□□□□ 0.37
TUBD1-202ENST00000340993 BTBD11A6QL63 1104 aa17.37■□□□□ 0.37
TUBD1-202ENST00000340993 LOC102724428A0A0B4J2F2 783 aa17.36■□□□□ 0.37
TUBD1-202ENST00000340993 SIK1P57059 783 aa17.36■□□□□ 0.37
TUBD1-202ENST00000340993 CEMIPQ8WUJ3 1361 aa17.36■□□□□ 0.37
TUBD1-202ENST00000340993 C5P01031 1676 aa17.35■□□□□ 0.37
TUBD1-202ENST00000340993 CCER2I3L3R5 266 aa17.35■□□□□ 0.37
TUBD1-202ENST00000340993 ATP6V1AP38606 617 aa17.35■□□□□ 0.37
TUBD1-202ENST00000340993 R3HDM1Q15032 1099 aaKnown RBP17.35■□□□□ 0.37
TUBD1-202ENST00000340993 SMIM5Q71RC9 77 aa17.35■□□□□ 0.37
TUBD1-202ENST00000340993 SMARCC1Q92922 1105 aaPredicted RBP17.35■□□□□ 0.37
TUBD1-202ENST00000340993 TRIM35Q9UPQ4 493 aa17.35■□□□□ 0.37
TUBD1-202ENST00000340993 TAF1LQ8IZX4 1826 aa17.35■□□□□ 0.37
TUBD1-202ENST00000340993 PAPPAQ13219 1627 aa17.35■□□□□ 0.37
TUBD1-202ENST00000340993 TTC5Q8N0Z6 440 aa17.35■□□□□ 0.37
TUBD1-202ENST00000340993 SLC4A9Q96Q91 983 aa17.34■□□□□ 0.37
TUBD1-202ENST00000340993 ITPK1Q13572 414 aa17.33■□□□□ 0.37
TUBD1-202ENST00000340993 ZNF827Q17R98 1081 aa17.33■□□□□ 0.37
TUBD1-202ENST00000340993 HTATSF1O43719 755 aaKnown RBP17.32■□□□□ 0.36
TUBD1-202ENST00000340993 LMOD3Q0VAK6 560 aa17.32■□□□□ 0.36
TUBD1-202ENST00000340993 ZNF790Q6PG37 636 aa17.32■□□□□ 0.36
TUBD1-202ENST00000340993 LINC00116Q8NCU8 138 aa17.32■□□□□ 0.36
TUBD1-202ENST00000340993 TUBGCP6Q96RT7 1819 aa17.32■□□□□ 0.36
TUBD1-202ENST00000340993 KCPQ6ZWJ8 1503 aa17.31■□□□□ 0.36
TUBD1-202ENST00000340993 TAF7Q15545 349 aaPredicted RBP17.31■□□□□ 0.36
TUBD1-202ENST00000340993 SLC27A3Q5K4L6 730 aa17.31■□□□□ 0.36
TUBD1-202ENST00000340993 NBPF14Q5TI25 921 aa17.31■□□□□ 0.36
TUBD1-202ENST00000340993 ZNF496Q96IT1 587 aaPredicted RBP17.31■□□□□ 0.36
TUBD1-202ENST00000340993 UBR2Q8IWV8 1755 aa17.31■□□□□ 0.36
TUBD1-202ENST00000340993 PRAMEF22A3QJZ6 481 aa17.3■□□□□ 0.36
TUBD1-202ENST00000340993 PHF14O94880 888 aa17.3■□□□□ 0.36
TUBD1-202ENST00000340993 PDGFDQ9GZP0 370 aaPredicted RBP17.3■□□□□ 0.36
TUBD1-202ENST00000340993 STK32BQ9NY57 414 aa17.3■□□□□ 0.36
TUBD1-202ENST00000340993 TSPYL4Q9UJ04 414 aa17.3■□□□□ 0.36
TUBD1-202ENST00000340993 TJP1Q07157 1748 aa17.3■□□□□ 0.36
TUBD1-202ENST00000340993 DNAJC10Q8IXB1 793 aa17.3■□□□□ 0.36
TUBD1-202ENST00000340993 C4BP0C0L5 1744 aa17.29■□□□□ 0.36
TUBD1-202ENST00000340993 KDM3BQ7LBC6 1761 aa17.29■□□□□ 0.36
TUBD1-202ENST00000340993 TFCP2L1Q9NZI6 479 aa17.29■□□□□ 0.36
TUBD1-202ENST00000340993 MYH14Q7Z406 1995 aaKnown RBP17.28■□□□□ 0.36
TUBD1-202ENST00000340993 MSH5O43196 834 aa17.28■□□□□ 0.36
TUBD1-202ENST00000340993 PIP4K2AP48426 406 aaPredicted RBP17.28■□□□□ 0.36
TUBD1-202ENST00000340993 AMIGO3Q86WK7 504 aa17.28■□□□□ 0.36
TUBD1-202ENST00000340993 AK7Q96M32 723 aa17.28■□□□□ 0.36
TUBD1-202ENST00000340993 COL5A3P25940 1745 aaPredicted RBP17.27■□□□□ 0.36
TUBD1-202ENST00000340993 SLC15A2Q16348 729 aa17.27■□□□□ 0.35
TUBD1-202ENST00000340993 ZNF330Q9Y3S2 320 aaPredicted RBP17.27■□□□□ 0.35
TUBD1-202ENST00000340993 GNPATO15228 680 aa17.26■□□□□ 0.35
TUBD1-202ENST00000340993 KRT24Q2M2I5 525 aa17.26■□□□□ 0.35
TUBD1-202ENST00000340993 FMNL2Q96PY5 1086 aa17.26■□□□□ 0.35
TUBD1-202ENST00000340993 WWC1Q8IX03 1113 aa17.25■□□□□ 0.35
TUBD1-202ENST00000340993 NECTIN2Q92692 538 aa17.25■□□□□ 0.35
TUBD1-202ENST00000340993 TSR2Q969E8 191 aaKnown RBP17.25■□□□□ 0.35
TUBD1-202ENST00000340993 AKT1S1Q96B36 256 aa17.25■□□□□ 0.35
TUBD1-202ENST00000340993 HEG1Q9ULI3 1381 aa17.24■□□□□ 0.35
TUBD1-202ENST00000340993 UBR3Q6ZT12 1888 aa17.24■□□□□ 0.35
TUBD1-202ENST00000340993 CRKLP46109 303 aaKnown RBP17.23■□□□□ 0.35
TUBD1-202ENST00000340993 MBIPQ9NS73 344 aa17.23■□□□□ 0.35
TUBD1-202ENST00000340993 ZBTB7AO95365 584 aa17.23■□□□□ 0.35
TUBD1-202ENST00000340993 CANXP27824 592 aaKnown RBP17.23■□□□□ 0.35
TUBD1-202ENST00000340993 USP16Q9Y5T5 823 aa17.23■□□□□ 0.35
TUBD1-202ENST00000340993 ELL2O00472 640 aaPredicted RBP17.22■□□□□ 0.35
TUBD1-202ENST00000340993 EIF4A1P60842 406 aaKnown RBP17.22■□□□□ 0.35
TUBD1-202ENST00000340993 PNPLA7Q6ZV29 1317 aa17.21■□□□□ 0.35
TUBD1-202ENST00000340993 MSL1Q68DK7 614 aa17.21■□□□□ 0.35
TUBD1-202ENST00000340993 ARXQ96QS3 562 aa17.21■□□□□ 0.35
TUBD1-202ENST00000340993 ZBTB1Q9Y2K1 713 aa17.21■□□□□ 0.35
TUBD1-202ENST00000340993 A1BGP04217 495 aa17.2■□□□□ 0.34
TUBD1-202ENST00000340993 CYP19A1P11511 503 aaPredicted RBP17.2■□□□□ 0.34
TUBD1-202ENST00000340993 EIF2S2P20042 333 aaKnown RBP17.2■□□□□ 0.34
TUBD1-202ENST00000340993 HNRNPUQ00839 825 aaKnown RBP eCLIP17.2■□□□□ 0.34
TUBD1-202ENST00000340993 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP17.2■□□□□ 0.34
TUBD1-202ENST00000340993 CHL1O00533 1208 aa17.2■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms