RNA–Protein interactions for RNA: ENST00000337392.9

CLPTM1-201, Transcript of CLPTM1, transmembrane protein, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLPTM1, Length 2,604 nt, Biotype protein coding, Subcellular localisation Cytosol, Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLPTM1-201ENST00000337392 USP54Q70EL1 1684 aa28.85■■■□□ 2.21
CLPTM1-201ENST00000337392 BMP2KLQ5H9B9 411 aa28.84■■■□□ 2.21
CLPTM1-201ENST00000337392 TBC1D9Q6ZT07 1266 aa28.84■■■□□ 2.21
CLPTM1-201ENST00000337392 LRRC37A3O60309 1634 aa28.83■■■□□ 2.21
CLPTM1-201ENST00000337392 CHRNA2Q15822 529 aa28.82■■■□□ 2.2
CLPTM1-201ENST00000337392 DNAJC5Q9H3Z4 198 aa28.82■■■□□ 2.2
CLPTM1-201ENST00000337392 PNMA6EA0A0J9YXQ4 647 aa28.81■■■□□ 2.2
CLPTM1-201ENST00000337392 CHPF2Q9P2E5 772 aa28.81■■■□□ 2.2
CLPTM1-201ENST00000337392 ATF3P18847 181 aa28.8■■■□□ 2.2
CLPTM1-201ENST00000337392 TEFQ10587 303 aa28.79■■■□□ 2.2
CLPTM1-201ENST00000337392 BECN1Q14457 450 aa28.79■■■□□ 2.2
CLPTM1-201ENST00000337392 CEMIPQ8WUJ3 1361 aa28.79■■■□□ 2.2
CLPTM1-201ENST00000337392 BTBD11A6QL63 1104 aa28.79■■■□□ 2.2
CLPTM1-201ENST00000337392 EIF4A1P60842 406 aaKnown RBP28.79■■■□□ 2.2
CLPTM1-201ENST00000337392 RPAP2Q8IXW5 612 aaPredicted RBP28.79■■■□□ 2.2
CLPTM1-201ENST00000337392 RGPD5Q99666 1765 aa28.78■■■□□ 2.2
CLPTM1-201ENST00000337392 RBM42Q9BTD8 480 aaKnown RBP28.77■■■□□ 2.2
CLPTM1-201ENST00000337392 STRCP1A6NGW2 1772 aa28.77■■■□□ 2.2
CLPTM1-201ENST00000337392 CCT4P50991 539 aaKnown RBP28.76■■■□□ 2.2
CLPTM1-201ENST00000337392 LRRFIP2Q9Y608 721 aaKnown RBP28.76■■■□□ 2.2
CLPTM1-201ENST00000337392 FAM208AQ9UK61 1670 aaKnown RBP28.76■■■□□ 2.19
CLPTM1-201ENST00000337392 NLRP2Q9NX02 1062 aa28.75■■■□□ 2.19
CLPTM1-201ENST00000337392 PLEKHO1Q53GL0 409 aaPredicted RBP28.74■■■□□ 2.19
CLPTM1-201ENST00000337392 PROSER3Q2NL68 480 aa28.74■■■□□ 2.19
CLPTM1-201ENST00000337392 AKAP4Q5JQC9 854 aa28.74■■■□□ 2.19
CLPTM1-201ENST00000337392 C1orf141Q5JVX7 400 aa28.73■■■□□ 2.19
CLPTM1-201ENST00000337392 RNMTO43148 476 aaKnown RBP28.73■■■□□ 2.19
CLPTM1-201ENST00000337392 GNAI2P04899 355 aa28.73■■■□□ 2.19
CLPTM1-201ENST00000337392 CD2BP2O95400 341 aaKnown RBP28.73■■■□□ 2.19
CLPTM1-201ENST00000337392 SLC39A6Q13433 755 aa28.73■■■□□ 2.19
CLPTM1-201ENST00000337392 USP44Q9H0E7 712 aa28.73■■■□□ 2.19
CLPTM1-201ENST00000337392 ERBB3P21860 1342 aa28.72■■■□□ 2.19
CLPTM1-201ENST00000337392 TRPM3Q9HCF6 1732 aaPredicted RBP28.72■■■□□ 2.19
CLPTM1-201ENST00000337392 TTC22Q5TAA0 569 aa28.72■■■□□ 2.19
CLPTM1-201ENST00000337392 PI4KAP2A4QPH2 592 aa28.71■■■□□ 2.19
CLPTM1-201ENST00000337392 PI4KAP1Q8N8J0 262 aa28.71■■■□□ 2.19
CLPTM1-201ENST00000337392 ANTXR1Q9H6X2 564 aa28.71■■■□□ 2.19
CLPTM1-201ENST00000337392 MST1RQ04912 1400 aa28.7■■■□□ 2.19
CLPTM1-201ENST00000337392 KIF2CQ99661 725 aa28.7■■■□□ 2.19
CLPTM1-201ENST00000337392 MED1Q15648 1581 aaPredicted RBP28.7■■■□□ 2.18
CLPTM1-201ENST00000337392 SLIT3O75094 1523 aa28.7■■■□□ 2.18
CLPTM1-201ENST00000337392 FOXD4L1Q9NU39 408 aa28.69■■■□□ 2.18
CLPTM1-201ENST00000337392 NBPF7P0C2Y1 421 aaPredicted RBP28.69■■■□□ 2.18
CLPTM1-201ENST00000337392 SDSP20132 328 aa28.68■■■□□ 2.18
CLPTM1-201ENST00000337392 CSB-PGBD3P0DP91 1061 aa28.67■■■□□ 2.18
CLPTM1-201ENST00000337392 PIP4K2AP48426 406 aaPredicted RBP28.66■■■□□ 2.18
CLPTM1-201ENST00000337392 CDC45O75419 566 aa28.65■■■□□ 2.18
CLPTM1-201ENST00000337392 IL1RAPL2Q9NP60 686 aa28.65■■■□□ 2.18
CLPTM1-201ENST00000337392 RBM25P49756 843 aaKnown RBP28.65■■■□□ 2.18
CLPTM1-201ENST00000337392 USP35Q9P2H5 1018 aa28.65■■■□□ 2.18
CLPTM1-201ENST00000337392 HMMRO75330 724 aa28.63■■■□□ 2.17
CLPTM1-201ENST00000337392 UBTFL1P0CB47 393 aaPredicted RBP28.63■■■□□ 2.17
CLPTM1-201ENST00000337392 AMOTQ4VCS5 1084 aa28.63■■■□□ 2.17
CLPTM1-201ENST00000337392 AIMP1Q12904 312 aaKnown RBP28.62■■■□□ 2.17
CLPTM1-201ENST00000337392 GNAI3P08754 354 aa28.61■■■□□ 2.17
CLPTM1-201ENST00000337392 GIGYF1O75420 1035 aaPredicted RBP28.6■■■□□ 2.17
CLPTM1-201ENST00000337392 UBE2Q2Q8WVN8 375 aa28.6■■■□□ 2.17
CLPTM1-201ENST00000337392 RAPGEF4Q8WZA2 1011 aa28.6■■■□□ 2.17
CLPTM1-201ENST00000337392 SRCIN1Q9C0H9 1055 aa28.6■■■□□ 2.17
CLPTM1-201ENST00000337392 NFATC2IPQ8NCF5 419 aa28.6■■■□□ 2.17
CLPTM1-201ENST00000337392 BABAM1Q9NWV8 329 aa28.6■■■□□ 2.17
CLPTM1-201ENST00000337392 PDE1AP54750 535 aa28.59■■■□□ 2.17
CLPTM1-201ENST00000337392 ATP8B2P98198 1209 aa28.59■■■□□ 2.17
CLPTM1-201ENST00000337392 CWF19L2Q2TBE0 894 aaKnown RBP28.59■■■□□ 2.17
CLPTM1-201ENST00000337392 PPP1R42Q7Z4L9 355 aa28.59■■■□□ 2.17
CLPTM1-201ENST00000337392 PHRF1Q9P1Y6 1649 aaKnown RBP28.59■■■□□ 2.17
CLPTM1-201ENST00000337392 HSCBQ8IWL3 235 aa28.58■■■□□ 2.17
CLPTM1-201ENST00000337392 ADCY9O60503 1353 aa28.58■■■□□ 2.17
CLPTM1-201ENST00000337392 DNAAF4Q8WXU2 420 aa28.58■■■□□ 2.17
CLPTM1-201ENST00000337392 KDM3BQ7LBC6 1761 aa28.58■■■□□ 2.17
CLPTM1-201ENST00000337392 LMO7Q8WWI1 1683 aa28.58■■■□□ 2.17
CLPTM1-201ENST00000337392 BEND3Q5T5X7 828 aa28.57■■■□□ 2.16
CLPTM1-201ENST00000337392 MEGF6O75095 1541 aa28.57■■■□□ 2.16
CLPTM1-201ENST00000337392 ALS2Q96Q42 1657 aa28.57■■■□□ 2.16
CLPTM1-201ENST00000337392 NUTM1Q86Y26 1132 aa28.56■■■□□ 2.16
CLPTM1-201ENST00000337392 LRRCC1Q9C099 1032 aa28.56■■■□□ 2.16
CLPTM1-201ENST00000337392 MAP3K2Q9Y2U5 619 aa28.56■■■□□ 2.16
CLPTM1-201ENST00000337392 MAP4K4O95819 1239 aaPredicted RBP28.56■■■□□ 2.16
CLPTM1-201ENST00000337392 MYL6BP14649 208 aa28.56■■■□□ 2.16
CLPTM1-201ENST00000337392 CADPS2Q86UW7 1296 aa28.56■■■□□ 2.16
CLPTM1-201ENST00000337392 ZNF335Q9H4Z2 1342 aaPredicted RBP28.55■■■□□ 2.16
CLPTM1-201ENST00000337392 UNC5CLQ8IV45 518 aa28.55■■■□□ 2.16
CLPTM1-201ENST00000337392 SRGAP3O43295 1099 aa28.54■■■□□ 2.16
CLPTM1-201ENST00000337392 NCAPD2Q15021 1401 aa28.54■■■□□ 2.16
CLPTM1-201ENST00000337392 BRINP3Q76B58 766 aa28.54■■■□□ 2.16
CLPTM1-201ENST00000337392 NPHP3Q7Z494 1330 aa28.53■■■□□ 2.16
CLPTM1-201ENST00000337392 SURF6O75683 361 aaKnown RBP28.53■■■□□ 2.16
CLPTM1-201ENST00000337392 CACNA1FO60840 1977 aa28.52■■■□□ 2.16
CLPTM1-201ENST00000337392 KIF1AQ12756 1690 aa28.52■■■□□ 2.16
CLPTM1-201ENST00000337392 KDM6AO15550 1401 aaPredicted RBP28.52■■■□□ 2.16
CLPTM1-201ENST00000337392 SOS1Q07889 1333 aaPredicted RBP28.52■■■□□ 2.16
CLPTM1-201ENST00000337392 CYP27B1O15528 508 aa28.52■■■□□ 2.16
CLPTM1-201ENST00000337392 RILPL2Q969X0 211 aa28.52■■■□□ 2.16
CLPTM1-201ENST00000337392 DBF4Q9UBU7 674 aaPredicted RBP28.52■■■□□ 2.16
CLPTM1-201ENST00000337392 PHKG2P15735 406 aa28.51■■■□□ 2.15
CLPTM1-201ENST00000337392 IBTKQ9P2D0 1353 aaPredicted RBP28.51■■■□□ 2.15
CLPTM1-201ENST00000337392 TATP17735 454 aaPredicted RBP28.5■■■□□ 2.15
CLPTM1-201ENST00000337392 JARID2Q92833 1246 aaPredicted RBP28.5■■■□□ 2.15
CLPTM1-201ENST00000337392 MX1P20591 662 aa28.5■■■□□ 2.15
CLPTM1-201ENST00000337392 ZNF790Q6PG37 636 aa28.5■■■□□ 2.15
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms